Wall clock time and date at job start Mon Mar 30 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47044 * 2 1 4 4 H 1.09000 * 109.47198 * 54.20905 * 3 2 1 5 5 C 1.50700 * 109.47282 * 174.20745 * 3 2 1 6 6 H 1.07996 * 119.99699 * 114.54862 * 5 3 2 7 7 C 1.37874 * 120.00063 * 294.55199 * 5 3 2 8 8 N 1.31513 * 120.00243 * 350.46716 * 7 5 3 9 9 Si 1.86797 * 119.99958 * 170.46436 * 7 5 3 10 10 H 1.48497 * 109.47119 * 90.00105 * 9 7 5 11 11 H 1.48499 * 109.47531 * 209.99969 * 9 7 5 12 12 H 1.48497 * 109.47369 * 330.00161 * 9 7 5 13 13 C 1.50704 * 109.47014 * 294.21146 * 3 2 1 14 14 O 1.21253 * 119.99590 * 269.99574 * 13 3 2 15 15 C 1.47165 * 120.00052 * 89.99728 * 13 3 2 16 16 C 1.39871 * 120.17320 * 0.02562 * 15 13 3 17 17 C 1.37861 * 119.82692 * 179.72009 * 16 15 13 18 18 C 1.38425 * 120.16954 * 359.97438 * 17 16 15 19 19 C 1.38383 * 120.35146 * 0.03692 * 18 17 16 20 20 C 1.50705 * 119.91321 * 179.97438 * 19 18 17 21 21 F 1.39900 * 109.46857 * 30.00131 * 20 19 18 22 22 F 1.39902 * 109.46720 * 150.00113 * 20 19 18 23 23 C 1.37901 * 120.16885 * 359.96159 * 19 18 17 24 24 H 1.09002 * 109.47090 * 64.11381 * 1 2 3 25 25 H 1.09004 * 109.47052 * 184.10974 * 1 2 3 26 26 H 1.08993 * 109.47292 * 304.10954 * 1 2 3 27 27 H 1.09001 * 109.47542 * 240.00110 * 2 1 3 28 28 H 1.09001 * 109.47476 * 119.99831 * 2 1 3 29 29 H 0.96996 * 120.00727 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.08732 * 359.74267 * 16 15 13 31 31 H 1.08004 * 119.91681 * 179.97438 * 17 16 15 32 32 H 1.08007 * 119.82555 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.46896 * 270.00143 * 20 19 18 34 34 H 1.08002 * 120.08242 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5945 1.9854 0.8336 5 6 3.5402 1.4450 0.1434 6 1 4.1592 1.8057 -0.6647 7 6 4.1223 0.9868 1.3062 8 7 3.3755 0.7248 2.3565 9 14 5.9718 0.7382 1.3898 10 1 6.6193 1.9917 1.8530 11 1 6.2813 -0.3594 2.3408 12 1 6.4851 0.3848 0.0419 13 6 1.6581 2.1104 -1.2959 14 8 2.4074 2.0598 -2.2478 15 6 0.3756 2.8238 -1.4060 16 6 -0.4912 2.8848 -0.3100 17 6 -1.6882 3.5600 -0.4192 18 6 -2.0327 4.1771 -1.6095 19 6 -1.1806 4.1210 -2.6984 20 6 -1.5659 4.7959 -3.9897 21 9 -2.3701 5.9068 -3.7134 22 9 -0.4111 5.2115 -4.6612 23 6 0.0202 3.4496 -2.6049 24 1 -0.3633 0.4487 -0.9246 25 1 -0.3633 -1.0251 0.0737 26 1 -0.3633 0.5762 0.8508 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7849 0.4021 3.1745 30 1 -0.2234 2.4046 0.6196 31 1 -2.3589 3.6077 0.4260 32 1 -2.9717 4.7049 -1.6888 33 1 -2.1176 4.0945 -4.6156 34 1 0.6844 3.4071 -3.4555 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156130078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:29 Heat of formation + Delta-G solvation = -126.665064 kcal Electronic energy + Delta-G solvation = -20165.150869 eV Core-core repulsion = 16698.315307 eV Total energy + Delta-G solvation = -3466.835561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.08058 -47.09626 -39.72936 -37.76257 -34.54458 -32.35986 -31.48102 -30.89289 -27.87703 -26.18980 -24.59395 -22.93272 -21.86634 -20.98028 -18.78238 -17.56484 -17.36592 -17.21174 -16.46422 -15.72749 -15.36217 -14.80885 -14.47100 -14.20168 -13.98276 -13.74447 -13.56385 -13.37787 -13.07378 -12.76685 -12.43867 -12.27631 -11.97197 -11.77931 -11.48424 -11.36957 -10.95866 -10.84685 -10.72191 -10.29080 -10.05471 -9.88770 -9.09558 -8.96018 -8.79761 -8.50090 -8.37515 -6.12865 -4.12910 0.91634 1.27726 2.99127 3.29272 3.36056 3.43453 3.62748 3.98538 4.08636 4.37552 4.47014 4.78575 4.86330 5.01860 5.11803 5.21074 5.37843 5.48983 5.71349 5.96701 6.02343 6.03378 6.14354 6.26142 6.38667 6.48201 6.63251 6.72872 6.82751 6.88764 7.02212 7.44857 7.60158 7.87526 8.16385 8.55450 8.91844 9.50679 10.96747 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028906 B = 0.004944 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.425730 B = 5661.908948 C = 6152.335287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C 0.011 3.989 4 H 0.058 0.942 5 C -0.512 4.512 6 H 0.067 0.933 7 C 0.066 3.934 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 C 0.399 3.601 14 O -0.460 6.460 15 C -0.153 4.153 16 C -0.050 4.050 17 C -0.138 4.138 18 C -0.071 4.071 19 C -0.191 4.191 20 C 0.316 3.684 21 F -0.202 7.202 22 F -0.199 7.199 23 C -0.042 4.042 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.262 0.738 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.328 4.389 -6.432 15.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.008 4.008 4 H 0.076 0.924 5 C -0.549 4.549 6 H 0.085 0.915 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 C 0.277 3.723 14 O -0.335 6.335 15 C -0.154 4.154 16 C -0.068 4.068 17 C -0.155 4.155 18 C -0.089 4.089 19 C -0.192 4.192 20 C 0.263 3.737 21 F -0.184 7.184 22 F -0.180 7.180 23 C -0.060 4.060 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.166 0.834 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.904 4.335 -6.766 15.201 hybrid contribution 0.886 0.023 0.204 0.910 sum -12.018 4.358 -6.562 14.369 Atomic orbital electron populations 1.22119 0.98730 1.00255 1.00295 1.21435 0.92012 0.98180 1.02435 1.19185 0.98171 0.93126 0.90270 0.92370 1.21029 0.89824 1.42921 1.01166 0.91515 1.24910 0.98354 0.95217 0.95152 1.69939 1.35526 1.45153 1.02101 0.86564 0.85409 0.77909 0.78072 1.20624 1.21100 1.19643 1.23378 0.82176 0.75529 0.91242 1.90371 1.50771 1.51741 1.40591 1.21154 0.98636 1.01477 0.94106 1.22030 0.92214 0.93663 0.98887 1.21139 0.97576 0.99137 0.97692 1.21042 0.98738 0.96992 0.92111 1.20285 0.98085 1.04943 0.95905 1.20280 0.78564 0.83581 0.91286 1.92978 1.73669 1.56902 1.94808 1.93010 1.51713 1.91670 1.81590 1.21219 0.94049 0.92520 0.98198 0.94097 0.94077 0.92871 0.93949 0.89546 0.92810 0.83389 0.84987 0.85255 0.86232 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 8.34 37.16 0.31 -2.42 16 2 C -0.10 -2.25 5.28 -26.73 -0.14 -2.39 16 3 C 0.01 0.27 1.61 -92.92 -0.15 0.12 16 4 H 0.06 1.41 6.42 -51.93 -0.33 1.08 16 5 C -0.51 -14.04 8.27 -34.44 -0.28 -14.32 16 6 H 0.07 1.92 7.10 -52.49 -0.37 1.55 16 7 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 8 N -0.89 -24.26 12.17 55.43 0.67 -23.58 16 9 Si 0.89 21.23 29.55 -169.99 -5.02 16.21 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.40 8.82 5.70 -30.68 -0.18 8.65 16 14 O -0.46 -11.33 15.92 5.58 0.09 -11.24 16 15 C -0.15 -2.74 5.00 -105.07 -0.53 -3.27 16 16 C -0.05 -0.77 7.52 -39.11 -0.29 -1.06 16 17 C -0.14 -1.70 10.03 -39.65 -0.40 -2.10 16 18 C -0.07 -0.84 9.39 -39.46 -0.37 -1.21 16 19 C -0.19 -2.53 5.73 -104.69 -0.60 -3.13 16 20 C 0.32 3.53 5.65 36.01 0.20 3.74 16 21 F -0.20 -2.38 16.47 2.25 0.04 -2.34 16 22 F -0.20 -2.68 16.47 2.25 0.04 -2.64 16 23 C -0.04 -0.67 8.94 -39.11 -0.35 -1.02 16 24 H 0.04 0.67 6.14 -51.93 -0.32 0.36 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.87 6.51 -51.93 -0.34 0.53 16 27 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 2.09 6.79 -51.93 -0.35 1.73 16 29 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.15 2.31 4.53 -52.48 -0.24 2.07 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.13 1.21 7.59 -52.48 -0.40 0.81 16 33 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.14 2.28 7.19 -52.49 -0.38 1.90 16 LS Contribution 291.60 15.07 4.39 4.39 Total: -1.00 -29.72 291.60 -6.21 -35.93 By element: Atomic # 1 Polarization: 3.56 SS G_CDS: -3.55 Total: 0.00 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -2.87 Total: -16.73 kcal Atomic # 7 Polarization: -24.26 SS G_CDS: 0.67 Total: -23.58 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.72 -6.21 -35.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156130078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.737 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds