Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.08996 * 109.47784 * 305.91180 * 3 2 1 5 5 C 1.50709 * 109.47140 * 185.91349 * 3 2 1 6 6 H 1.08002 * 119.99593 * 275.19293 * 5 3 2 7 7 C 1.37868 * 119.99818 * 95.19268 * 5 3 2 8 8 N 1.31515 * 120.00082 * 184.64448 * 7 5 3 9 9 Si 1.86801 * 120.00418 * 4.64785 * 7 5 3 10 10 H 1.48499 * 109.47214 * 84.85609 * 9 7 5 11 11 H 1.48501 * 109.47350 * 204.86030 * 9 7 5 12 12 H 1.48503 * 109.46757 * 324.85600 * 9 7 5 13 13 C 1.50702 * 109.47071 * 65.91555 * 3 2 1 14 14 O 1.21255 * 120.00273 * 94.99953 * 13 3 2 15 15 C 1.47166 * 119.99916 * 274.99636 * 13 3 2 16 16 C 1.39876 * 120.17239 * 0.02562 * 15 13 3 17 17 C 1.37861 * 119.82566 * 180.02562 * 16 15 13 18 18 C 1.38424 * 120.17129 * 359.97438 * 17 16 15 19 19 C 1.38386 * 120.35199 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.91367 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47308 * 30.00571 * 20 19 18 22 22 F 1.39906 * 109.47041 * 150.00120 * 20 19 18 23 23 C 1.37911 * 120.16854 * 359.72194 * 19 18 17 24 24 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 25 25 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 26 26 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 28 28 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 29 29 H 0.97001 * 120.00795 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.08343 * 0.02562 * 16 15 13 31 31 H 1.07996 * 119.91420 * 179.97438 * 17 16 15 32 32 H 1.07997 * 119.82614 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47827 * 270.00059 * 20 19 18 34 34 H 1.08000 * 120.08811 * 180.27778 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9860 -0.8323 5 6 3.5400 1.4450 -0.1464 6 1 4.1677 1.3293 0.7248 7 6 4.1107 1.5950 -1.3924 8 7 5.4152 1.5059 -1.5332 9 14 3.0311 1.9248 -2.8808 10 1 2.7605 3.3814 -2.9830 11 1 3.7266 1.4631 -4.1089 12 1 1.7479 1.1920 -2.7335 13 6 1.6608 2.1093 1.2971 14 8 2.4491 2.1365 2.2181 15 6 0.3336 2.7277 1.4461 16 6 -0.5787 2.6980 0.3863 17 6 -1.8198 3.2799 0.5335 18 6 -2.1642 3.8920 1.7264 19 6 -1.2671 3.9255 2.7796 20 6 -1.6521 4.5949 4.0736 21 9 -3.0348 4.4906 4.2594 22 9 -0.9904 3.9706 5.1365 23 6 -0.0237 3.3433 2.6497 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8169 1.6118 -2.4098 30 1 -0.3116 2.2205 -0.5448 31 1 -2.5252 3.2583 -0.2840 32 1 -3.1381 4.3457 1.8357 33 1 -1.3688 5.6468 4.0370 34 1 0.6737 3.3663 3.4740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156130201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -120.451794 kcal Electronic energy + Delta-G solvation = -20291.096953 eV Core-core repulsion = 16824.530819 eV Total energy + Delta-G solvation = -3466.566134 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.13140 -47.14509 -39.90056 -37.85968 -34.74875 -32.48663 -31.71198 -31.02264 -28.35053 -26.28991 -24.65757 -22.86357 -21.95278 -21.14994 -18.75741 -17.66125 -17.59919 -17.28141 -16.84756 -15.89250 -15.46632 -14.98053 -14.58186 -14.14743 -14.11108 -13.79598 -13.78306 -13.43057 -13.08541 -12.93258 -12.65945 -12.34101 -12.10777 -12.06601 -11.91928 -11.53559 -11.07324 -10.95581 -10.85412 -10.41417 -10.05773 -9.87396 -9.20311 -9.04633 -8.87876 -8.74568 -8.54571 -6.14627 -4.15549 0.80891 1.17824 2.88591 3.19059 3.24424 3.28813 3.56407 3.87998 4.02750 4.31358 4.36260 4.68369 4.77589 4.91483 4.99167 5.15016 5.20627 5.38721 5.58101 5.77115 5.78651 5.87345 5.89470 6.06750 6.25292 6.31210 6.35612 6.44277 6.49602 6.67060 6.76565 6.95773 7.14259 7.53723 8.31833 8.50302 8.99953 9.44640 10.98300 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.005426 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.730895 B = 5158.716417 C = 5495.865290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.109 4.109 3 C -0.020 4.020 4 H 0.053 0.947 5 C -0.509 4.509 6 H 0.087 0.913 7 C 0.074 3.926 8 N -0.892 5.892 9 Si 0.867 3.133 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.261 1.261 13 C 0.401 3.599 14 O -0.445 6.445 15 C -0.154 4.154 16 C -0.057 4.057 17 C -0.138 4.138 18 C -0.069 4.069 19 C -0.189 4.189 20 C 0.316 3.684 21 F -0.202 7.202 22 F -0.198 7.198 23 C -0.039 4.039 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.266 0.734 30 H 0.145 0.855 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.334 5.213 4.308 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.147 4.147 3 C -0.040 4.040 4 H 0.071 0.929 5 C -0.546 4.546 6 H 0.105 0.895 7 C -0.128 4.128 8 N -0.529 5.529 9 Si 0.693 3.307 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.186 1.186 13 C 0.277 3.723 14 O -0.318 6.318 15 C -0.155 4.155 16 C -0.075 4.075 17 C -0.156 4.156 18 C -0.087 4.087 19 C -0.190 4.190 20 C 0.263 3.737 21 F -0.183 7.183 22 F -0.179 7.179 23 C -0.057 4.057 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.162 0.838 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.752 5.213 4.701 18.163 hybrid contribution -0.616 0.182 -0.897 1.103 sum -17.368 5.396 3.804 18.580 Atomic orbital electron populations 1.22339 0.98283 1.00925 1.00909 1.21710 0.92615 0.97936 1.02454 1.19602 0.99270 0.93258 0.91847 0.92942 1.20838 0.87807 1.50338 0.95651 0.89511 1.25032 0.94847 0.94495 0.98418 1.69885 1.09822 1.49192 1.24018 0.87010 0.81412 0.79251 0.82984 1.19936 1.21130 1.18604 1.23143 0.83179 0.75574 0.90432 1.90405 1.50719 1.48941 1.41743 1.21156 0.98160 1.01857 0.94365 1.22037 0.92534 0.93921 0.98983 1.21109 0.97153 0.99630 0.97692 1.21049 0.98451 0.96900 0.92302 1.20311 0.96994 1.05765 0.95942 1.20284 0.73395 0.97632 0.82431 1.92979 1.32039 1.97558 1.95768 1.93014 1.80503 1.85382 1.59022 1.21237 0.94628 0.92284 0.97575 0.92812 0.92993 0.93460 0.91390 0.92297 0.92430 0.83767 0.84975 0.85140 0.86098 0.84188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 8.24 37.16 0.31 -2.31 16 2 C -0.11 -2.16 5.37 -26.73 -0.14 -2.30 16 3 C -0.02 -0.46 1.42 -92.92 -0.13 -0.59 16 4 H 0.05 1.12 3.90 -51.93 -0.20 0.92 16 5 C -0.51 -14.13 8.55 -34.44 -0.29 -14.43 16 6 H 0.09 2.74 7.51 -52.49 -0.39 2.35 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -26.79 13.96 55.43 0.77 -26.02 16 9 Si 0.87 20.09 26.98 -169.99 -4.59 15.50 16 10 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.26 -5.51 6.83 56.52 0.39 -5.13 16 13 C 0.40 8.59 5.90 -30.68 -0.18 8.40 16 14 O -0.44 -10.88 15.93 5.58 0.09 -10.79 16 15 C -0.15 -2.65 4.95 -105.06 -0.52 -3.17 16 16 C -0.06 -0.82 7.06 -39.11 -0.28 -1.09 16 17 C -0.14 -1.59 10.03 -39.65 -0.40 -1.98 16 18 C -0.07 -0.77 9.40 -39.46 -0.37 -1.14 16 19 C -0.19 -2.39 5.73 -104.69 -0.60 -2.99 16 20 C 0.32 3.38 5.65 36.00 0.20 3.58 16 21 F -0.20 -2.26 16.47 2.25 0.04 -2.23 16 22 F -0.20 -2.56 16.47 2.25 0.04 -2.53 16 23 C -0.04 -0.60 8.95 -39.11 -0.35 -0.95 16 24 H 0.05 0.82 5.28 -51.93 -0.27 0.55 16 25 H 0.05 0.74 6.53 -51.93 -0.34 0.40 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 30 H 0.14 2.04 4.24 -52.49 -0.22 1.82 16 31 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.13 7.59 -52.49 -0.40 0.74 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.14 2.24 7.18 -52.49 -0.38 1.86 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -31.40 288.70 -5.62 -37.03 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.47 Total: 1.66 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -2.85 Total: -16.97 kcal Atomic # 7 Polarization: -26.79 SS G_CDS: 0.77 Total: -26.02 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.59 Total: 15.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.40 -5.62 -37.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156130201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.426 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds