Wall clock time and date at job start Mon Mar 30 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47054 * 2 1 4 4 H 1.08996 * 109.47784 * 305.91180 * 3 2 1 5 5 C 1.50709 * 109.47140 * 185.91349 * 3 2 1 6 6 H 1.08002 * 119.99593 * 275.19293 * 5 3 2 7 7 C 1.37868 * 119.99818 * 95.19268 * 5 3 2 8 8 N 1.31515 * 120.00082 * 184.64448 * 7 5 3 9 9 Si 1.86801 * 120.00418 * 4.64785 * 7 5 3 10 10 H 1.48499 * 109.47214 * 84.85609 * 9 7 5 11 11 H 1.48501 * 109.47350 * 204.86030 * 9 7 5 12 12 H 1.48503 * 109.46757 * 324.85600 * 9 7 5 13 13 C 1.50702 * 109.47071 * 65.91555 * 3 2 1 14 14 O 1.21255 * 120.00273 * 94.99953 * 13 3 2 15 15 C 1.47166 * 119.99916 * 274.99636 * 13 3 2 16 16 C 1.39876 * 120.17239 * 0.02562 * 15 13 3 17 17 C 1.37861 * 119.82566 * 180.02562 * 16 15 13 18 18 C 1.38424 * 120.17129 * 359.97438 * 17 16 15 19 19 C 1.38386 * 120.35199 * 0.02562 * 18 17 16 20 20 C 1.50694 * 119.91367 * 179.97438 * 19 18 17 21 21 F 1.39902 * 109.47308 * 30.00571 * 20 19 18 22 22 F 1.39906 * 109.47041 * 150.00120 * 20 19 18 23 23 C 1.37911 * 120.16854 * 359.72194 * 19 18 17 24 24 H 1.08995 * 109.47281 * 300.00120 * 1 2 3 25 25 H 1.09001 * 109.46818 * 59.99751 * 1 2 3 26 26 H 1.09000 * 109.47219 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46887 * 239.99972 * 2 1 3 28 28 H 1.09001 * 109.46818 * 120.00249 * 2 1 3 29 29 H 0.97001 * 120.00795 * 180.02562 * 8 7 5 30 30 H 1.07999 * 120.08343 * 0.02562 * 16 15 13 31 31 H 1.07996 * 119.91420 * 179.97438 * 17 16 15 32 32 H 1.07997 * 119.82614 * 180.02562 * 18 17 16 33 33 H 1.08994 * 109.47827 * 270.00059 * 20 19 18 34 34 H 1.08000 * 120.08811 * 180.27778 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5929 1.9860 -0.8323 5 6 3.5400 1.4450 -0.1464 6 1 4.1677 1.3293 0.7248 7 6 4.1107 1.5950 -1.3924 8 7 5.4152 1.5059 -1.5332 9 14 3.0311 1.9248 -2.8808 10 1 2.7605 3.3814 -2.9830 11 1 3.7266 1.4631 -4.1089 12 1 1.7479 1.1920 -2.7335 13 6 1.6608 2.1093 1.2971 14 8 2.4491 2.1365 2.2181 15 6 0.3336 2.7277 1.4461 16 6 -0.5787 2.6980 0.3863 17 6 -1.8198 3.2799 0.5335 18 6 -2.1642 3.8920 1.7264 19 6 -1.2671 3.9255 2.7796 20 6 -1.6521 4.5949 4.0736 21 9 -3.0348 4.4906 4.2594 22 9 -0.9904 3.9706 5.1365 23 6 -0.0237 3.3433 2.6497 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.8169 1.6118 -2.4098 30 1 -0.3116 2.2205 -0.5448 31 1 -2.5252 3.2583 -0.2840 32 1 -3.1381 4.3457 1.8357 33 1 -1.3688 5.6468 4.0370 34 1 0.6737 3.3663 3.4740 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156130201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:32 Heat of formation + Delta-G solvation = -139.735164 kcal Electronic energy + Delta-G solvation = -20291.933142 eV Core-core repulsion = 16824.530819 eV Total energy + Delta-G solvation = -3467.402323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.00557 -48.03036 -41.25745 -39.25079 -36.45041 -34.33702 -32.94041 -32.14761 -30.06397 -27.24287 -26.26321 -24.41451 -23.01983 -22.50464 -20.18659 -19.35177 -18.43448 -18.42845 -18.13151 -17.08003 -16.95556 -16.43075 -15.93384 -15.81592 -15.34715 -14.98827 -14.76103 -14.70576 -14.33869 -14.12148 -14.06078 -13.78923 -13.69270 -13.47562 -13.08149 -12.79052 -12.61456 -12.40279 -12.00502 -11.92845 -11.74239 -11.61909 -11.19699 -10.75542 -10.31402 -10.05434 -9.97083 -8.30425 -6.39058 -0.35103 0.14739 1.34866 1.37906 1.48820 1.53337 2.34680 2.62076 2.75417 3.00463 3.19099 3.24939 3.64010 3.91233 3.97810 4.02652 4.12208 4.29535 4.33354 4.38860 4.45954 4.61288 4.69483 4.81106 4.86220 5.12910 5.17174 5.23521 5.28400 5.32166 5.36798 5.50537 5.62056 5.78862 6.24524 6.70630 6.79045 7.25616 8.87254 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.028001 B = 0.005426 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.730895 B = 5158.716417 C = 5495.865290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.023 4.023 4 H 0.075 0.925 5 C -0.523 4.523 6 H 0.021 0.979 7 C 0.009 3.991 8 N -0.950 5.950 9 Si 0.940 3.060 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.217 1.217 13 C 0.399 3.601 14 O -0.500 6.500 15 C -0.182 4.182 16 C -0.058 4.058 17 C -0.122 4.122 18 C -0.051 4.051 19 C -0.189 4.189 20 C 0.315 3.685 21 F -0.202 7.202 22 F -0.216 7.216 23 C -0.053 4.053 24 H 0.055 0.945 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.268 0.732 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.167 0.833 33 H 0.162 0.838 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 6.414 2.279 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.043 4.043 4 H 0.093 0.907 5 C -0.561 4.561 6 H 0.039 0.961 7 C -0.188 4.188 8 N -0.590 5.590 9 Si 0.761 3.239 10 H -0.185 1.185 11 H -0.212 1.212 12 H -0.140 1.140 13 C 0.279 3.721 14 O -0.378 6.378 15 C -0.183 4.183 16 C -0.076 4.076 17 C -0.140 4.140 18 C -0.069 4.069 19 C -0.190 4.190 20 C 0.261 3.739 21 F -0.183 7.183 22 F -0.197 7.197 23 C -0.072 4.072 24 H 0.074 0.926 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.194 0.806 32 H 0.185 0.815 33 H 0.178 0.822 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.061 6.406 2.689 23.129 hybrid contribution 1.037 -0.177 -0.147 1.062 sum -21.024 6.228 2.542 22.074 Atomic orbital electron populations 1.22261 0.94004 1.02932 1.02290 1.21583 0.96348 0.95433 1.01192 1.19625 0.95602 0.95530 0.93515 0.90674 1.20996 0.90725 1.50534 0.93842 0.96100 1.26129 0.96461 0.93803 1.02445 1.70084 1.12626 1.51102 1.25150 0.85846 0.80751 0.80213 0.77115 1.18485 1.21172 1.13952 1.23388 0.84918 0.74602 0.89207 1.90383 1.52959 1.51329 1.43121 1.20680 0.96467 1.04510 0.96641 1.22143 0.93154 0.94291 0.98027 1.21560 0.96214 0.97363 0.98839 1.21543 0.99137 0.94993 0.91246 1.20514 0.95882 1.05043 0.97559 1.20638 0.73136 0.99157 0.80920 1.92980 1.31986 1.97646 1.95671 1.92985 1.80955 1.85920 1.59850 1.21123 0.95925 0.93463 0.96641 0.92617 0.90360 0.91234 0.91854 0.94608 0.92306 0.83148 0.80622 0.81510 0.82154 0.86361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.40 8.24 71.98 0.59 -3.80 16 2 C -0.11 -4.22 5.37 30.59 0.16 -4.06 16 3 C -0.02 -1.07 1.42 -12.28 -0.02 -1.09 16 4 H 0.08 3.05 3.90 -2.39 -0.01 3.04 16 5 C -0.52 -30.97 8.55 25.60 0.22 -30.75 16 6 H 0.02 1.45 7.51 -2.91 -0.02 1.43 16 7 C 0.01 0.50 5.47 84.65 0.46 0.96 16 8 N -0.95 -60.29 13.96 21.44 0.30 -59.99 16 9 Si 0.94 40.72 26.98 68.60 1.85 42.58 16 10 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.22 -7.83 6.83 99.48 0.68 -7.15 16 13 C 0.40 17.82 5.90 28.03 0.17 17.99 16 14 O -0.50 -26.75 15.93 -2.95 -0.05 -26.80 16 15 C -0.18 -6.10 4.95 -20.15 -0.10 -6.20 16 16 C -0.06 -1.45 7.06 22.58 0.16 -1.29 16 17 C -0.12 -2.06 10.03 22.22 0.22 -1.84 16 18 C -0.05 -0.86 9.40 22.35 0.21 -0.65 16 19 C -0.19 -4.19 5.73 -19.91 -0.11 -4.31 16 20 C 0.31 5.79 5.65 71.23 0.40 6.20 16 21 F -0.20 -3.74 16.47 44.97 0.74 -2.99 16 22 F -0.22 -5.39 16.47 44.97 0.74 -4.65 16 23 C -0.05 -1.62 8.95 22.58 0.20 -1.42 16 24 H 0.05 1.55 5.28 -2.39 -0.01 1.54 16 25 H 0.08 1.79 6.53 -2.39 -0.02 1.77 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.15 3.49 4.24 -2.91 -0.01 3.47 16 31 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.17 1.68 7.59 -2.91 -0.02 1.66 16 33 H 0.16 1.73 8.14 -2.39 -0.02 1.72 16 34 H 0.12 4.04 7.18 -2.91 -0.02 4.02 16 Total: -1.00 -77.45 288.70 7.26 -70.19 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 1.11 Total: 11.92 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 2.57 Total: -30.26 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: 0.30 Total: -59.99 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.48 Total: -7.64 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.85 Total: 42.58 kcal Total: -77.45 7.26 -70.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156130201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.542 kcal (2) G-P(sol) polarization free energy of solvation -77.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds