Wall clock time and date at job start Mon Mar 30 2020 07:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38247 * 120.00548 * 2 1 4 4 C 1.38264 * 120.21027 * 180.27007 * 3 2 1 5 5 C 1.38282 * 120.21236 * 359.48949 * 4 3 2 6 6 C 1.38644 * 120.00700 * 0.25529 * 5 4 3 7 7 N 1.39890 * 120.10742 * 180.02562 * 6 5 4 8 8 C 1.38731 * 120.00071 * 179.75845 * 2 1 3 9 9 N 1.39804 * 120.10746 * 359.96204 * 8 2 1 10 10 C 1.38728 * 119.99926 * 84.09696 * 9 8 2 11 11 C 1.39638 * 119.84526 * 5.06111 * 10 9 8 12 12 C 1.36301 * 120.15242 * 179.75980 * 11 10 9 13 13 C 1.40907 * 119.84119 * 0.52225 * 12 11 10 14 14 C 1.41088 * 120.15029 * 179.71269 * 13 12 11 15 15 H 1.07995 * 120.00509 * 334.48903 * 14 13 12 16 16 C 1.39837 * 120.00322 * 154.48395 * 14 13 12 17 17 N 1.30923 * 119.99657 * 343.36349 * 16 14 13 18 18 Si 1.86790 * 120.00280 * 163.36281 * 16 14 13 19 19 H 1.48500 * 109.47205 * 60.00115 * 18 16 14 20 20 H 1.48504 * 109.47429 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47359 * 300.00264 * 18 16 14 22 22 C 1.40913 * 119.70153 * 359.73932 * 13 12 11 23 23 C 1.36296 * 119.83773 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.47201 * 270.23862 * 1 2 3 25 25 H 1.08996 * 109.47038 * 30.24071 * 1 2 3 26 26 H 1.09000 * 109.47025 * 150.23494 * 1 2 3 27 27 H 1.08006 * 119.89097 * 0.02562 * 3 2 1 28 28 H 1.07995 * 119.89199 * 179.76125 * 4 3 2 29 29 H 1.08004 * 119.99646 * 180.27156 * 5 4 3 30 30 H 0.97000 * 119.99554 * 357.33554 * 7 6 5 31 31 H 0.96996 * 120.00031 * 177.34841 * 7 6 5 32 32 H 0.96996 * 120.00096 * 264.08609 * 9 8 2 33 33 H 1.07991 * 119.92187 * 0.03486 * 11 10 9 34 34 H 1.07993 * 120.07696 * 180.28149 * 12 11 10 35 35 H 0.96998 * 120.00490 * 179.97438 * 17 16 14 36 36 H 1.07998 * 120.08264 * 179.97438 * 22 13 12 37 37 H 1.08006 * 119.91995 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1972 0.0000 4 6 3.5810 1.2021 -0.0056 5 6 4.2811 0.0097 -0.0007 6 6 3.5968 -1.1961 0.0047 7 7 4.3030 -2.4037 0.0103 8 6 2.2007 -1.2014 0.0051 9 7 1.5040 -2.4135 0.0110 10 6 1.0505 -2.9587 -1.1814 11 6 1.3820 -2.3508 -2.3940 12 6 0.9439 -2.8839 -3.5694 13 6 0.1456 -4.0449 -3.5583 14 6 -0.3165 -4.5988 -4.7709 15 1 -0.4322 -3.9710 -5.6419 16 6 -0.6247 -5.9608 -4.8449 17 7 -0.1903 -6.7813 -3.9218 18 14 -1.6560 -6.6094 -6.2608 19 1 -0.9664 -6.3273 -7.5454 20 1 -1.8398 -8.0752 -6.1085 21 1 -2.9822 -5.9414 -6.2539 22 6 -0.1898 -4.6500 -2.3307 23 6 0.2600 -4.1095 -1.1631 24 1 -0.3633 0.0043 1.0276 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6567 2.1316 0.0004 28 1 4.1158 2.1403 -0.0095 29 1 5.3611 0.0176 -0.0006 30 1 5.2722 -2.3989 -0.0286 31 1 3.8235 -3.2457 0.0528 32 1 1.3378 -2.8733 0.8487 33 1 1.9906 -1.4587 -2.4007 34 1 1.2049 -2.4153 -4.5067 35 1 -0.4043 -7.7260 -3.9728 36 1 -0.8016 -5.5397 -2.3150 37 1 0.0035 -4.5720 -0.2213 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158536670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:17 Heat of formation + Delta-G solvation = 30.529736 kcal Electronic energy + Delta-G solvation = -19577.431193 eV Core-core repulsion = 16703.934391 eV Total energy + Delta-G solvation = -2873.496802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94088 -39.26461 -36.46480 -35.60964 -34.72016 -32.37039 -31.35266 -30.55492 -28.81486 -27.61211 -26.13436 -23.40603 -22.55116 -22.16918 -21.63032 -19.13585 -18.11666 -17.81005 -17.55834 -17.15477 -16.81501 -15.69098 -15.36171 -15.30987 -14.72929 -14.55872 -14.24476 -14.05960 -13.84868 -13.73651 -13.30639 -13.25275 -13.01795 -12.74409 -12.70897 -12.38021 -12.36254 -11.94235 -11.57859 -11.26452 -11.23235 -11.11592 -10.40960 -9.40002 -9.38658 -8.54944 -8.32977 -8.18588 -6.02892 0.53658 0.80502 1.10501 1.20345 1.40186 1.50767 1.59610 2.27440 2.84620 2.87065 3.00885 3.16568 3.84719 4.07325 4.22563 4.44675 4.50278 4.58194 4.65766 4.68050 4.83957 4.88183 5.03308 5.06489 5.19528 5.30476 5.36681 5.40135 5.47028 5.70644 5.74849 5.78895 5.86071 5.95577 6.11424 6.18193 6.42252 6.60350 6.72465 6.94634 7.02943 7.08352 7.22627 7.29319 8.48115 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.032927 B = 0.004468 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.152645 B = 6264.850940 C = 6433.775988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.055 4.055 3 C -0.187 4.187 4 C -0.071 4.071 5 C -0.213 4.213 6 C 0.204 3.796 7 N -0.867 5.867 8 C 0.059 3.941 9 N -0.693 5.693 10 C 0.121 3.879 11 C -0.146 4.146 12 C -0.201 4.201 13 C 0.042 3.958 14 C -0.507 4.507 15 H 0.065 0.935 16 C 0.034 3.966 17 N -0.841 5.841 18 Si 0.975 3.025 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.263 1.263 22 C -0.141 4.141 23 C -0.167 4.167 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.404 0.596 31 H 0.397 0.603 32 H 0.398 0.602 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.282 0.718 36 H 0.101 0.899 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.736 10.180 9.278 14.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.058 4.058 3 C -0.207 4.207 4 C -0.090 4.090 5 C -0.236 4.236 6 C 0.096 3.904 7 N -0.406 5.406 8 C -0.039 4.039 9 N -0.324 5.324 10 C 0.024 3.976 11 C -0.169 4.169 12 C -0.221 4.221 13 C 0.039 3.961 14 C -0.538 4.538 15 H 0.083 0.917 16 C -0.178 4.178 17 N -0.469 5.469 18 Si 0.797 3.203 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.188 1.188 22 C -0.161 4.161 23 C -0.189 4.189 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.152 0.848 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.234 0.766 31 H 0.226 0.774 32 H 0.234 0.766 33 H 0.113 0.887 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.119 0.881 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.801 10.070 9.268 14.864 hybrid contribution -0.271 -1.140 -0.533 1.288 sum 5.530 8.929 8.735 13.660 Atomic orbital electron populations 1.20673 0.91213 1.02308 1.02288 1.20298 0.96429 0.92693 0.96335 1.20941 0.94677 0.97015 1.08083 1.21176 0.93854 0.98076 0.95877 1.20739 1.00262 0.90687 1.11915 1.18437 0.90982 0.87718 0.93306 1.42419 1.09008 1.05178 1.83975 1.16953 0.88493 0.86176 1.12271 1.40872 1.63737 1.22553 1.05252 1.17282 0.99824 0.94662 0.85839 1.19907 1.04617 1.00741 0.91600 1.20707 1.04005 1.00979 0.96420 1.17775 0.92079 0.92483 0.93758 1.19551 1.42266 0.94530 0.97481 0.91679 1.26563 0.94850 0.96656 0.99697 1.69902 1.36936 1.04987 1.35044 0.85363 0.79171 0.77439 0.78332 1.18808 1.19333 1.18769 1.20832 1.02501 1.00940 0.91800 1.20221 1.03287 0.97817 0.97571 0.90403 0.90969 0.93290 0.84752 0.83485 0.84500 0.76636 0.77447 0.76562 0.88747 0.89421 0.90726 0.88076 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.03 9.76 71.24 0.70 -2.34 16 2 C -0.06 -1.61 5.89 -19.74 -0.12 -1.73 16 3 C -0.19 -4.57 9.69 22.28 0.22 -4.35 16 4 C -0.07 -1.56 10.04 22.29 0.22 -1.34 16 5 C -0.21 -5.05 9.89 22.38 0.22 -4.83 16 6 C 0.20 5.71 6.78 38.28 0.26 5.97 16 7 N -0.87 -21.66 9.08 -50.96 -0.46 -22.13 16 8 C 0.06 1.82 4.28 38.32 0.16 1.99 16 9 N -0.69 -22.97 3.79 -179.74 -0.68 -23.65 16 10 C 0.12 5.08 5.59 38.73 0.22 5.29 16 11 C -0.15 -6.72 9.24 22.16 0.20 -6.51 16 12 C -0.20 -10.39 9.74 22.47 0.22 -10.17 16 13 C 0.04 2.34 5.57 -21.27 -0.12 2.22 16 14 C -0.51 -28.75 9.03 23.36 0.21 -28.54 16 15 H 0.06 3.60 7.90 -2.91 -0.02 3.58 16 16 C 0.03 1.81 5.15 85.22 0.44 2.25 16 17 N -0.84 -45.65 10.94 21.81 0.24 -45.41 16 18 Si 0.98 40.22 29.59 68.60 2.03 42.25 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 22 C -0.14 -7.49 8.62 22.47 0.19 -7.30 16 23 C -0.17 -7.59 9.82 22.15 0.22 -7.37 16 24 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.07 1.80 8.09 -2.39 -0.02 1.78 16 26 H 0.05 1.67 6.58 -2.39 -0.02 1.66 16 27 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 30 H 0.40 7.89 8.85 -92.71 -0.82 7.07 16 31 H 0.40 10.79 8.12 -92.71 -0.75 10.04 16 32 H 0.40 11.80 8.82 -92.71 -0.82 10.98 16 33 H 0.09 4.17 6.96 -2.92 -0.02 4.15 16 34 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.28 13.99 8.30 -92.71 -0.77 13.22 16 36 H 0.10 5.67 6.18 -2.91 -0.02 5.65 16 37 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.12 312.05 3.10 -59.02 By element: Atomic # 1 Polarization: 47.94 SS G_CDS: -1.27 Total: 46.67 kcal Atomic # 6 Polarization: -60.00 SS G_CDS: 3.25 Total: -56.75 kcal Atomic # 7 Polarization: -90.29 SS G_CDS: -0.91 Total: -91.19 kcal Atomic # 14 Polarization: 40.22 SS G_CDS: 2.03 Total: 42.25 kcal Total: -62.12 3.10 -59.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158536670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.549 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds