Wall clock time and date at job start Mon Mar 30 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47323 * 299.99938 * 3 2 1 6 6 H 1.48508 * 109.47345 * 59.99790 * 3 2 1 7 7 C 1.37875 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00228 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46849 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00269 * 89.99938 * 10 9 7 12 12 S 1.71199 * 120.00192 * 185.53977 * 11 10 9 13 13 N 1.34773 * 119.99772 * 5.54114 * 11 10 9 14 14 C 1.46507 * 119.99775 * 174.94320 * 13 11 10 15 15 C 1.54259 * 110.03718 * 272.63402 * 14 13 11 16 16 C 1.54967 * 104.16208 * 217.14092 * 15 14 13 17 17 C 1.54884 * 102.77783 * 37.88443 * 16 15 14 18 18 C 1.53881 * 110.02872 * 155.41299 * 14 13 11 19 19 C 1.46504 * 119.99824 * 269.99125 * 10 9 7 20 20 C 1.52999 * 117.49852 * 206.50949 * 19 10 9 21 21 C 1.52998 * 117.49745 * 137.88637 * 19 10 9 22 22 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47085 * 59.99461 * 9 7 2 24 24 H 1.08999 * 109.46565 * 299.99371 * 9 7 2 25 25 H 0.96998 * 120.00722 * 354.67082 * 13 11 10 26 26 H 1.09003 * 110.01269 * 34.03094 * 14 13 11 27 27 H 1.09012 * 110.48314 * 335.78368 * 15 14 13 28 28 H 1.08997 * 110.49146 * 98.42496 * 15 14 13 29 29 H 1.09006 * 110.71161 * 279.57181 * 16 15 14 30 30 H 1.08998 * 110.92435 * 156.29647 * 16 15 14 31 31 H 1.09003 * 110.48403 * 203.40888 * 17 16 15 32 32 H 1.08996 * 110.60140 * 80.82400 * 17 16 15 33 33 H 1.09001 * 110.03320 * 238.56915 * 18 14 13 34 34 H 1.08997 * 110.03521 * 0.02562 * 18 14 13 35 35 H 1.08997 * 115.55068 * 352.22348 * 19 10 9 36 36 H 1.08996 * 117.50345 * 0.02562 * 20 19 10 37 37 H 1.08995 * 117.49546 * 145.02685 * 20 19 10 38 38 H 1.08996 * 117.50190 * 214.98205 * 21 19 10 39 39 H 1.09006 * 117.49639 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6409 -4.1249 1.1677 12 16 3.8583 -5.3285 1.1711 13 7 2.1204 -3.6896 2.3321 14 6 2.5150 -4.3227 3.5930 15 6 1.6085 -5.5372 3.8810 16 6 1.4094 -5.5059 5.4175 17 6 1.2989 -3.9904 5.7177 18 6 2.3187 -3.3396 4.7605 19 6 2.6788 -4.1695 -1.2682 20 6 3.1314 -5.6310 -1.2728 21 6 4.1666 -4.5092 -1.3768 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 1.4876 -2.9545 2.3359 26 1 3.5571 -4.6383 3.5419 27 1 0.6516 -5.4286 3.3702 28 1 2.1010 -6.4612 3.5781 29 1 2.2705 -5.9388 5.9267 30 1 0.4936 -6.0239 5.7020 31 1 1.5653 -3.7866 6.7549 32 1 0.2925 -3.6298 5.5055 33 1 3.2653 -3.1789 5.2765 34 1 1.9295 -2.3917 4.3890 35 1 2.1819 -3.7934 -2.1625 36 1 3.0748 -6.1784 -0.3319 37 1 2.9322 -6.2167 -2.1701 38 1 4.6485 -4.3570 -2.3426 39 1 4.7915 -4.3180 -0.5043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000164242611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:41 Heat of formation + Delta-G solvation = 48.384728 kcal Electronic energy + Delta-G solvation = -19035.312089 eV Core-core repulsion = 16298.033488 eV Total energy + Delta-G solvation = -2737.278600 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.44240 -38.09340 -35.37312 -33.56880 -32.11473 -28.70461 -28.19934 -27.06220 -24.15072 -22.59406 -21.64298 -20.82712 -20.57478 -19.77780 -17.59949 -16.80348 -16.60939 -15.59084 -15.15804 -14.79446 -14.35624 -14.26552 -13.66187 -13.29734 -13.23877 -12.57870 -12.29336 -11.86993 -11.77752 -11.44833 -11.19464 -11.11501 -11.04085 -10.97395 -10.86764 -10.70393 -10.62914 -10.56324 -10.23297 -10.01333 -9.74323 -9.61867 -8.81542 -7.96228 -6.76139 -6.40433 -6.16936 -4.52353 2.13319 2.62859 3.09020 3.18476 3.22431 3.27686 3.97137 4.17662 4.62162 4.67443 4.71380 4.91285 4.96024 5.43932 5.47248 5.54353 5.62575 5.63012 5.66618 5.70702 5.87005 5.87249 5.92575 6.09382 6.13837 6.30968 6.35366 6.38810 6.40941 6.44811 6.73368 6.90085 7.07955 7.21619 7.31552 7.52314 7.69361 7.72547 7.99951 8.57010 9.17361 10.64058 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.007988 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.460987 B = 3504.401116 C = 4995.009546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.227 3.773 10 N -0.514 5.514 11 C 0.576 3.424 12 S -0.706 6.706 13 N -0.679 5.679 14 C 0.140 3.860 15 C -0.130 4.130 16 C -0.122 4.122 17 C -0.123 4.123 18 C -0.134 4.134 19 C 0.066 3.934 20 C -0.195 4.195 21 C -0.174 4.174 22 H 0.268 0.732 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.407 0.593 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.154 0.846 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.376 -6.479 6.748 9.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.730 3.270 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.106 3.894 10 N -0.216 5.216 11 C 0.212 3.788 12 S -0.576 6.576 13 N -0.312 5.312 14 C 0.034 3.966 15 C -0.169 4.169 16 C -0.160 4.160 17 C -0.161 4.161 18 C -0.172 4.172 19 C -0.039 4.039 20 C -0.235 4.235 21 C -0.214 4.214 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.248 0.752 26 H 0.134 0.866 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.909 -7.051 6.758 9.809 hybrid contribution -0.671 2.210 -0.255 2.323 sum 0.238 -4.841 6.502 8.110 Atomic orbital electron populations 1.69922 1.06065 1.27749 1.48835 1.24954 0.94932 0.99581 0.94154 0.86344 0.80230 0.82524 0.77946 1.19427 1.20544 1.20656 1.21431 0.93891 0.89673 1.53281 0.91499 1.19753 0.87621 0.82801 0.99257 1.46830 1.40794 1.31362 1.02572 1.21819 0.87048 0.87793 0.82181 1.92692 1.34087 1.36668 1.94148 1.45346 1.44882 1.36558 1.04398 1.22004 1.02041 0.92067 0.80450 1.22751 0.99696 0.98883 0.95529 1.22474 1.01578 0.96080 0.95892 1.22352 0.99259 0.95577 0.98932 1.22462 1.00205 0.98799 0.95766 1.21769 0.98498 0.98211 0.85374 1.24435 1.02066 0.91527 1.05434 1.23673 0.92277 1.02417 1.03022 0.92207 0.93149 0.94619 0.75236 0.86623 0.91628 0.90208 0.91268 0.91603 0.91591 0.91566 0.90578 0.90876 0.85433 0.82885 0.90830 0.90527 0.85428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.29 13.29 55.43 0.74 -22.56 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 20.03 29.54 -169.99 -5.02 15.00 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.66 9.39 -34.44 -0.32 -13.98 16 8 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.23 5.15 5.05 -5.19 -0.03 5.12 16 10 N -0.51 -10.63 2.84 -169.48 -0.48 -11.11 16 11 C 0.58 11.53 7.51 -86.92 -0.65 10.88 16 12 S -0.71 -14.61 20.49 -107.50 -2.20 -16.81 16 13 N -0.68 -12.00 4.91 -54.43 -0.27 -12.27 16 14 C 0.14 2.07 3.04 -66.81 -0.20 1.87 16 15 C -0.13 -1.72 6.54 -25.03 -0.16 -1.89 16 16 C -0.12 -1.29 6.91 -24.70 -0.17 -1.46 16 17 C -0.12 -1.30 6.83 -25.07 -0.17 -1.48 16 18 C -0.13 -1.67 6.57 -25.61 -0.17 -1.84 16 19 C 0.07 1.26 6.63 -67.93 -0.45 0.81 16 20 C -0.19 -3.49 9.39 -26.73 -0.25 -3.74 16 21 C -0.17 -3.25 9.52 -26.73 -0.25 -3.50 16 22 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 23 H 0.05 1.20 8.04 -51.93 -0.42 0.78 16 24 H 0.04 0.82 6.23 -51.93 -0.32 0.49 16 25 H 0.41 7.39 6.00 -40.82 -0.24 7.15 16 26 H 0.12 1.92 6.68 -51.93 -0.35 1.58 16 27 H 0.06 0.92 8.05 -51.92 -0.42 0.51 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.98 7.61 -51.93 -0.40 0.58 16 35 H 0.13 2.30 8.10 -51.93 -0.42 1.88 16 36 H 0.15 3.05 4.53 -20.81 -0.09 2.96 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.13 2.69 5.71 -33.97 -0.19 2.49 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -26.78 317.43 -11.17 -37.95 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.78 Total: 12.59 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -2.93 Total: -7.58 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.01 Total: -45.93 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: -14.61 SS G_CDS: -2.20 Total: -16.81 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.78 -11.17 -37.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164242611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.333 kcal (2) G-P(sol) polarization free energy of solvation -26.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds