Wall clock time and date at job start Mon Mar 30 2020 07:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86791 * 120.00137 * 2 1 4 4 H 1.48499 * 109.47080 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47323 * 299.99938 * 3 2 1 6 6 H 1.48508 * 109.47345 * 59.99790 * 3 2 1 7 7 C 1.37875 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00228 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46849 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00269 * 89.99938 * 10 9 7 12 12 S 1.71199 * 120.00192 * 185.53977 * 11 10 9 13 13 N 1.34773 * 119.99772 * 5.54114 * 11 10 9 14 14 C 1.46507 * 119.99775 * 174.94320 * 13 11 10 15 15 C 1.54259 * 110.03718 * 272.63402 * 14 13 11 16 16 C 1.54967 * 104.16208 * 217.14092 * 15 14 13 17 17 C 1.54884 * 102.77783 * 37.88443 * 16 15 14 18 18 C 1.53881 * 110.02872 * 155.41299 * 14 13 11 19 19 C 1.46504 * 119.99824 * 269.99125 * 10 9 7 20 20 C 1.52999 * 117.49852 * 206.50949 * 19 10 9 21 21 C 1.52998 * 117.49745 * 137.88637 * 19 10 9 22 22 H 0.97001 * 120.00077 * 359.97438 * 1 2 3 23 23 H 1.08993 * 109.47085 * 59.99461 * 9 7 2 24 24 H 1.08999 * 109.46565 * 299.99371 * 9 7 2 25 25 H 0.96998 * 120.00722 * 354.67082 * 13 11 10 26 26 H 1.09003 * 110.01269 * 34.03094 * 14 13 11 27 27 H 1.09012 * 110.48314 * 335.78368 * 15 14 13 28 28 H 1.08997 * 110.49146 * 98.42496 * 15 14 13 29 29 H 1.09006 * 110.71161 * 279.57181 * 16 15 14 30 30 H 1.08998 * 110.92435 * 156.29647 * 16 15 14 31 31 H 1.09003 * 110.48403 * 203.40888 * 17 16 15 32 32 H 1.08996 * 110.60140 * 80.82400 * 17 16 15 33 33 H 1.09001 * 110.03320 * 238.56915 * 18 14 13 34 34 H 1.08997 * 110.03521 * 0.02562 * 18 14 13 35 35 H 1.08997 * 115.55068 * 352.22348 * 19 10 9 36 36 H 1.08996 * 117.50345 * 0.02562 * 20 19 10 37 37 H 1.08995 * 117.49546 * 145.02685 * 20 19 10 38 38 H 1.08996 * 117.50190 * 214.98205 * 21 19 10 39 39 H 1.09006 * 117.49639 * 359.97438 * 21 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.6409 -4.1249 1.1677 12 16 3.8583 -5.3285 1.1711 13 7 2.1204 -3.6896 2.3321 14 6 2.5150 -4.3227 3.5930 15 6 1.6085 -5.5372 3.8810 16 6 1.4094 -5.5059 5.4175 17 6 1.2989 -3.9904 5.7177 18 6 2.3187 -3.3396 4.7605 19 6 2.6788 -4.1695 -1.2682 20 6 3.1314 -5.6310 -1.2728 21 6 4.1666 -4.5092 -1.3768 22 1 -0.4850 0.8400 0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 1.4876 -2.9545 2.3359 26 1 3.5571 -4.6383 3.5419 27 1 0.6516 -5.4286 3.3702 28 1 2.1010 -6.4612 3.5781 29 1 2.2705 -5.9388 5.9267 30 1 0.4936 -6.0239 5.7020 31 1 1.5653 -3.7866 6.7549 32 1 0.2925 -3.6298 5.5055 33 1 3.2653 -3.1789 5.2765 34 1 1.9295 -2.3917 4.3890 35 1 2.1819 -3.7934 -2.1625 36 1 3.0748 -6.1784 -0.3319 37 1 2.9322 -6.2167 -2.1701 38 1 4.6485 -4.3570 -2.3426 39 1 4.7915 -4.3180 -0.5043 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000164242611.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:41 Heat of formation + Delta-G solvation = 36.129512 kcal Electronic energy + Delta-G solvation = -19035.843515 eV Core-core repulsion = 16298.033488 eV Total energy + Delta-G solvation = -2737.810026 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.90734 -39.36257 -36.76079 -35.34430 -33.73640 -29.96726 -29.61629 -28.38440 -25.89373 -24.18284 -23.11056 -22.25060 -21.57751 -21.06018 -19.16612 -18.70209 -18.13264 -16.82561 -16.62322 -16.21428 -15.88846 -15.68220 -15.01120 -14.88498 -14.29196 -14.19684 -13.83192 -13.58948 -13.27221 -12.88128 -12.77208 -12.58078 -12.46983 -12.37142 -12.05805 -12.02091 -11.92797 -11.80627 -11.57389 -11.49465 -11.32910 -11.10922 -10.75782 -9.47785 -8.48342 -8.25179 -7.79068 -6.53318 0.54534 1.02227 1.33120 1.38025 1.48211 1.76566 2.28715 2.47545 2.94355 3.20524 3.58366 3.70136 3.93946 3.99849 4.15754 4.40732 4.44365 4.51347 4.52305 4.57605 4.60061 4.73148 4.79164 4.90818 4.91502 5.03572 5.07054 5.11733 5.22008 5.28191 5.40555 5.45740 5.52935 5.60182 5.69272 5.78589 5.82283 6.13938 6.41225 6.60572 7.19523 8.68781 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.007988 C = 0.005604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.460987 B = 3504.401116 C = 4995.009546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.275 1.275 6 H -0.273 1.273 7 C -0.552 4.552 8 H 0.049 0.951 9 C 0.243 3.757 10 N -0.521 5.521 11 C 0.570 3.430 12 S -0.722 6.722 13 N -0.672 5.672 14 C 0.134 3.866 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.131 4.131 19 C 0.049 3.951 20 C -0.179 4.179 21 C -0.174 4.174 22 H 0.272 0.728 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.404 0.596 26 H 0.098 0.902 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -6.354 7.502 9.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.067 0.933 9 C 0.120 3.880 10 N -0.224 5.224 11 C 0.205 3.795 12 S -0.592 6.592 13 N -0.303 5.303 14 C 0.030 3.970 15 C -0.164 4.164 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.169 4.169 19 C -0.055 4.055 20 C -0.219 4.219 21 C -0.213 4.213 22 H 0.082 0.918 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.245 0.755 26 H 0.116 0.884 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.155 0.845 36 H 0.153 0.847 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.839 -6.945 7.537 10.283 hybrid contribution -0.627 2.134 -0.479 2.275 sum 0.213 -4.811 7.059 8.545 Atomic orbital electron populations 1.69982 1.07018 1.28645 1.49319 1.25579 0.95598 1.02172 0.93759 0.85479 0.78588 0.79260 0.78236 1.20101 1.20020 1.19865 1.21489 0.93088 0.91023 1.53450 0.93273 1.19404 0.87514 0.82693 0.98367 1.46776 1.40946 1.31253 1.03402 1.21871 0.87147 0.87833 0.82645 1.92666 1.34829 1.37287 1.94449 1.45567 1.43986 1.36019 1.04723 1.22220 1.01326 0.93403 0.80049 1.22676 0.98476 0.97378 0.97884 1.22457 1.02886 0.96426 0.93321 1.22344 0.98513 0.95096 0.99529 1.22471 1.01537 0.97707 0.95199 1.22023 0.99029 0.99279 0.85145 1.24307 1.00983 0.90840 1.05775 1.23595 0.91721 1.02857 1.03132 0.91848 0.94428 0.94937 0.75545 0.88419 0.92601 0.91443 0.90147 0.90018 0.89349 0.91622 0.89431 0.91939 0.84459 0.84732 0.88004 0.88200 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.51 13.29 21.45 0.28 -47.23 16 2 C 0.03 1.56 5.46 84.65 0.46 2.02 16 3 Si 0.96 40.70 29.54 68.60 2.03 42.73 16 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.55 -27.88 9.39 25.60 0.24 -27.64 16 8 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 9 C 0.24 11.14 5.05 85.64 0.43 11.58 16 10 N -0.52 -21.78 2.84 -690.12 -1.96 -23.74 16 11 C 0.57 23.15 7.51 179.06 1.34 24.49 16 12 S -0.72 -30.20 20.49 -56.49 -1.16 -31.36 16 13 N -0.67 -24.05 4.91 -326.11 -1.60 -25.65 16 14 C 0.13 3.97 3.04 45.71 0.14 4.11 16 15 C -0.13 -3.26 6.54 31.69 0.21 -3.05 16 16 C -0.11 -2.14 6.91 31.91 0.22 -1.92 16 17 C -0.12 -2.20 6.83 31.67 0.22 -1.98 16 18 C -0.13 -3.12 6.57 31.32 0.21 -2.91 16 19 C 0.05 1.86 6.63 44.99 0.30 2.16 16 20 C -0.18 -6.25 9.39 30.59 0.29 -5.96 16 21 C -0.17 -6.35 9.52 30.59 0.29 -6.06 16 22 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 23 H 0.04 1.82 8.04 -2.39 -0.02 1.80 16 24 H 0.03 1.51 6.23 -2.39 -0.01 1.50 16 25 H 0.40 14.92 6.00 -92.71 -0.56 14.37 16 26 H 0.10 3.28 6.68 -2.39 -0.02 3.26 16 27 H 0.06 1.56 8.05 -2.38 -0.02 1.54 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.63 7.61 -2.39 -0.02 1.61 16 35 H 0.14 4.86 8.10 -2.39 -0.02 4.84 16 36 H 0.14 5.32 4.53 -22.18 -0.10 5.22 16 37 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.10 4.32 5.71 -13.80 -0.08 4.24 16 Total: -1.00 -56.48 317.43 2.26 -54.22 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.33 Total: 36.20 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: 4.35 Total: -5.17 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.28 Total: -96.62 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 16 Polarization: -30.20 SS G_CDS: -1.16 Total: -31.36 kcal Total: -56.48 2.26 -54.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000164242611.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.350 kcal (2) G-P(sol) polarization free energy of solvation -56.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds