Wall clock time and date at job start Mon Mar 30 2020 07:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38188 * 119.92637 * 2 1 4 4 C 1.38963 * 120.08542 * 180.02562 * 3 2 1 5 5 N 1.39669 * 120.03548 * 179.97438 * 4 3 2 6 6 C 1.38773 * 119.93051 * 359.97438 * 4 3 2 7 7 C 1.38817 * 119.84570 * 359.97438 * 6 4 3 8 8 N 1.39597 * 120.04163 * 179.97438 * 7 6 4 9 9 C 1.38820 * 119.99797 * 328.85033 * 8 7 6 10 10 C 1.39602 * 119.84285 * 334.53725 * 9 8 7 11 11 C 1.36312 * 120.15843 * 180.25598 * 10 9 8 12 12 C 1.40905 * 119.83359 * 359.50416 * 11 10 9 13 13 C 1.41109 * 120.15097 * 180.22388 * 12 11 10 14 14 H 1.08000 * 119.99955 * 161.66106 * 13 12 11 15 15 C 1.39847 * 120.00158 * 341.67468 * 13 12 11 16 16 N 1.30918 * 119.99377 * 325.21196 * 15 13 12 17 17 Si 1.86797 * 120.00366 * 145.22026 * 15 13 12 18 18 H 1.48496 * 109.47467 * 84.98655 * 17 15 13 19 19 H 1.48498 * 109.46970 * 204.98725 * 17 15 13 20 20 H 1.48501 * 109.46975 * 324.98476 * 17 15 13 21 21 C 1.40899 * 119.69728 * 0.47599 * 12 11 10 22 22 C 1.36313 * 119.83951 * 359.77484 * 21 12 11 23 23 C 1.38113 * 119.91970 * 180.25856 * 2 1 3 24 24 H 1.08999 * 109.47258 * 89.99255 * 1 2 3 25 25 H 1.09000 * 109.47442 * 209.99958 * 1 2 3 26 26 H 1.09000 * 109.46842 * 329.99828 * 1 2 3 27 27 H 1.08001 * 119.95703 * 0.02733 * 3 2 1 28 28 H 0.96999 * 120.00206 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00143 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.07528 * 180.02562 * 6 4 3 31 31 H 0.96996 * 120.00187 * 148.84165 * 8 7 6 32 32 H 1.08003 * 119.92488 * 359.97438 * 10 9 8 33 33 H 1.07997 * 120.08434 * 179.74107 * 11 10 9 34 34 H 0.97006 * 119.99724 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.08205 * 179.75213 * 21 12 11 36 36 H 1.07995 * 119.92356 * 179.97438 * 22 21 12 37 37 H 1.08000 * 119.96702 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1976 0.0000 4 6 3.5861 1.2015 -0.0005 5 7 4.2818 2.4126 -0.0011 6 6 4.2818 0.0008 -0.0005 7 6 3.5864 -1.2006 0.0005 8 7 4.2821 -2.4109 0.0000 9 6 5.5193 -2.4999 -0.6233 10 6 5.8378 -1.6249 -1.6634 11 6 7.0487 -1.7100 -2.2834 12 6 7.9839 -2.6774 -1.8651 13 6 9.2413 -2.7684 -2.4991 14 1 10.0559 -3.2834 -2.0116 15 6 9.4327 -2.1915 -3.7586 16 7 8.4560 -2.1839 -4.6303 17 14 11.0820 -1.4320 -4.1971 18 1 11.9959 -2.4890 -4.6997 19 1 10.8887 -0.4030 -5.2503 20 1 11.6725 -0.7999 -2.9901 21 6 7.6558 -3.5571 -0.8145 22 6 6.4392 -3.4640 -0.2069 23 6 2.1959 -1.1970 -0.0054 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6545 2.1318 0.0004 28 1 5.2518 2.4147 -0.0011 29 1 3.7950 3.2516 -0.0015 30 1 5.3618 0.0010 -0.0005 31 1 3.9012 -3.1895 0.4352 32 1 5.1213 -0.8816 -1.9806 33 1 7.2923 -1.0352 -3.0906 34 1 8.5889 -1.7840 -5.5040 35 1 8.3664 -4.3036 -0.4916 36 1 6.1861 -4.1377 0.5983 37 1 1.6541 -2.1313 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165837118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:21 Heat of formation + Delta-G solvation = 38.780817 kcal Electronic energy + Delta-G solvation = -19188.399218 eV Core-core repulsion = 16315.260209 eV Total energy + Delta-G solvation = -2873.139009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.48044 -37.74454 -35.42237 -34.37091 -33.26077 -30.69662 -29.58194 -29.01582 -27.64037 -26.52877 -24.58457 -21.92575 -21.30738 -20.67492 -19.83891 -17.38650 -16.83606 -16.67180 -15.80151 -15.60274 -15.11422 -14.63834 -14.01473 -13.86675 -13.55682 -13.10182 -12.80327 -12.72889 -12.36955 -12.08575 -12.06993 -11.90018 -11.49599 -11.28158 -11.13320 -11.05455 -10.87956 -10.64114 -10.32641 -9.89961 -9.49813 -9.28545 -8.88906 -7.93266 -7.57282 -7.21212 -6.99606 -6.46721 -4.16430 1.89951 2.07672 2.80886 3.03682 3.05679 3.07899 3.27425 3.89829 4.04024 4.28469 4.35271 4.54110 5.15690 5.41600 5.61861 5.68221 5.72780 5.77216 5.92202 6.03094 6.15601 6.18918 6.24843 6.32976 6.71569 6.85511 6.90014 6.96833 7.02097 7.04266 7.19723 7.21339 7.51465 7.57997 7.75745 7.83310 8.02482 8.03645 8.18883 8.39963 8.56113 8.63583 8.86351 9.00888 10.03147 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.004534 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.139338 B = 6173.511404 C = 6769.896693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.014 4.014 3 C -0.252 4.252 4 C 0.245 3.755 5 N -0.881 5.881 6 C -0.249 4.249 7 C 0.253 3.747 8 N -0.676 5.676 9 C 0.021 3.979 10 C -0.115 4.115 11 C -0.162 4.162 12 C 0.099 3.901 13 C -0.469 4.469 14 H 0.080 0.920 15 C 0.090 3.910 16 N -0.767 5.767 17 Si 0.893 3.107 18 H -0.268 1.268 19 H -0.276 1.276 20 H -0.258 1.258 21 C -0.214 4.214 22 C -0.115 4.115 23 C -0.241 4.241 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.109 0.891 28 H 0.397 0.603 29 H 0.393 0.607 30 H 0.126 0.874 31 H 0.394 0.606 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.283 0.717 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.079 6.110 5.907 12.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.015 4.015 3 C -0.276 4.276 4 C 0.141 3.859 5 N -0.420 5.420 6 C -0.276 4.276 7 C 0.149 3.851 8 N -0.296 5.296 9 C -0.073 4.073 10 C -0.136 4.136 11 C -0.182 4.182 12 C 0.096 3.904 13 C -0.497 4.497 14 H 0.098 0.902 15 C -0.132 4.132 16 N -0.390 5.390 17 Si 0.716 3.284 18 H -0.193 1.193 19 H -0.201 1.201 20 H -0.182 1.182 21 C -0.234 4.234 22 C -0.136 4.136 23 C -0.265 4.265 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.225 0.775 29 H 0.220 0.780 30 H 0.144 0.856 31 H 0.228 0.772 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.106 0.894 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.056 6.135 5.576 12.278 hybrid contribution 0.820 0.335 -0.243 0.919 sum -8.236 6.470 5.333 11.753 Atomic orbital electron populations 1.20751 0.91973 1.02074 1.01922 1.19227 0.94819 0.92231 0.95266 1.20086 0.91762 0.97337 1.18375 1.17464 0.90926 0.85906 0.91651 1.42440 1.08913 1.04945 1.85662 1.20362 1.00025 0.89953 1.17248 1.17429 0.90196 0.85992 0.91436 1.41610 1.19278 1.08977 1.59709 1.17123 0.86743 1.04274 0.99180 1.20303 0.97638 0.99984 0.95672 1.20690 0.94360 1.00992 1.02174 1.17521 0.92431 0.89501 0.90912 1.19410 0.97367 1.31963 1.00971 0.90198 1.25913 0.98253 0.93476 0.95579 1.69998 1.34354 1.29970 1.04638 0.86587 0.82896 0.79845 0.79074 1.19299 1.20072 1.18229 1.20423 0.96529 1.02771 1.03666 1.19974 0.94097 0.99624 0.99920 1.20356 0.92216 0.97431 1.16461 0.91457 0.91890 0.92027 0.87342 0.77503 0.77995 0.85615 0.77158 0.88637 0.87481 0.90621 0.88852 0.89362 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.01 -0.20 5.87 -104.68 -0.61 -0.82 16 3 C -0.25 -3.66 9.54 -39.33 -0.38 -4.04 16 4 C 0.25 3.84 6.75 -83.82 -0.57 3.27 16 5 N -0.88 -10.86 9.09 32.39 0.29 -10.57 16 6 C -0.25 -4.51 7.54 -39.17 -0.30 -4.81 16 7 C 0.25 4.58 5.92 -83.81 -0.50 4.09 16 8 N -0.68 -12.68 5.42 -8.32 -0.05 -12.73 16 9 C 0.02 0.46 6.07 -83.68 -0.51 -0.05 16 10 C -0.12 -2.74 7.75 -39.77 -0.31 -3.05 16 11 C -0.16 -4.20 8.77 -39.27 -0.34 -4.54 16 12 C 0.10 2.62 5.61 -106.79 -0.60 2.02 16 13 C -0.47 -12.34 8.93 -37.89 -0.34 -12.67 16 14 H 0.08 2.03 8.03 -52.49 -0.42 1.61 16 15 C 0.09 2.22 4.74 -17.34 -0.08 2.14 16 16 N -0.77 -19.59 11.70 55.54 0.65 -18.94 16 17 Si 0.89 18.20 29.67 -169.99 -5.04 13.15 16 18 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 19 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.21 -5.21 9.74 -39.27 -0.38 -5.59 16 22 C -0.12 -2.57 9.87 -39.77 -0.39 -2.96 16 23 C -0.24 -3.85 9.61 -39.33 -0.38 -4.23 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 26 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.40 4.65 8.84 -40.82 -0.36 4.29 16 29 H 0.39 3.80 8.84 -40.82 -0.36 3.44 16 30 H 0.13 2.49 6.52 -52.49 -0.34 2.15 16 31 H 0.39 6.43 8.88 -40.82 -0.36 6.07 16 32 H 0.10 2.21 6.26 -52.48 -0.33 1.88 16 33 H 0.11 2.85 6.36 -52.49 -0.33 2.51 16 34 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -28.15 312.48 -9.35 -37.50 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: -4.60 Total: 18.95 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -5.32 Total: -32.08 kcal Atomic # 7 Polarization: -43.14 SS G_CDS: 0.90 Total: -42.24 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.15 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.15 -9.35 -37.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165837118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.285 kcal (2) G-P(sol) polarization free energy of solvation -28.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds