Wall clock time and date at job start Mon Mar 30 2020 07:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38188 * 119.92637 * 2 1 4 4 C 1.38963 * 120.08542 * 180.02562 * 3 2 1 5 5 N 1.39669 * 120.03548 * 179.97438 * 4 3 2 6 6 C 1.38773 * 119.93051 * 359.97438 * 4 3 2 7 7 C 1.38817 * 119.84570 * 359.97438 * 6 4 3 8 8 N 1.39597 * 120.04163 * 179.97438 * 7 6 4 9 9 C 1.38820 * 119.99797 * 328.85033 * 8 7 6 10 10 C 1.39602 * 119.84285 * 334.53725 * 9 8 7 11 11 C 1.36312 * 120.15843 * 180.25598 * 10 9 8 12 12 C 1.40905 * 119.83359 * 359.50416 * 11 10 9 13 13 C 1.41109 * 120.15097 * 180.22388 * 12 11 10 14 14 H 1.08000 * 119.99955 * 161.66106 * 13 12 11 15 15 C 1.39847 * 120.00158 * 341.67468 * 13 12 11 16 16 N 1.30918 * 119.99377 * 325.21196 * 15 13 12 17 17 Si 1.86797 * 120.00366 * 145.22026 * 15 13 12 18 18 H 1.48496 * 109.47467 * 84.98655 * 17 15 13 19 19 H 1.48498 * 109.46970 * 204.98725 * 17 15 13 20 20 H 1.48501 * 109.46975 * 324.98476 * 17 15 13 21 21 C 1.40899 * 119.69728 * 0.47599 * 12 11 10 22 22 C 1.36313 * 119.83951 * 359.77484 * 21 12 11 23 23 C 1.38113 * 119.91970 * 180.25856 * 2 1 3 24 24 H 1.08999 * 109.47258 * 89.99255 * 1 2 3 25 25 H 1.09000 * 109.47442 * 209.99958 * 1 2 3 26 26 H 1.09000 * 109.46842 * 329.99828 * 1 2 3 27 27 H 1.08001 * 119.95703 * 0.02733 * 3 2 1 28 28 H 0.96999 * 120.00206 * 179.97438 * 5 4 3 29 29 H 0.96999 * 120.00143 * 359.97438 * 5 4 3 30 30 H 1.07999 * 120.07528 * 180.02562 * 6 4 3 31 31 H 0.96996 * 120.00187 * 148.84165 * 8 7 6 32 32 H 1.08003 * 119.92488 * 359.97438 * 10 9 8 33 33 H 1.07997 * 120.08434 * 179.74107 * 11 10 9 34 34 H 0.97006 * 119.99724 * 180.02562 * 16 15 13 35 35 H 1.08001 * 120.08205 * 179.75213 * 21 12 11 36 36 H 1.07995 * 119.92356 * 179.97438 * 22 21 12 37 37 H 1.08000 * 119.96702 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.1976 0.0000 4 6 3.5861 1.2015 -0.0005 5 7 4.2818 2.4126 -0.0011 6 6 4.2818 0.0008 -0.0005 7 6 3.5864 -1.2006 0.0005 8 7 4.2821 -2.4109 0.0000 9 6 5.5193 -2.4999 -0.6233 10 6 5.8378 -1.6249 -1.6634 11 6 7.0487 -1.7100 -2.2834 12 6 7.9839 -2.6774 -1.8651 13 6 9.2413 -2.7684 -2.4991 14 1 10.0559 -3.2834 -2.0116 15 6 9.4327 -2.1915 -3.7586 16 7 8.4560 -2.1839 -4.6303 17 14 11.0820 -1.4320 -4.1971 18 1 11.9959 -2.4890 -4.6997 19 1 10.8887 -0.4030 -5.2503 20 1 11.6725 -0.7999 -2.9901 21 6 7.6558 -3.5571 -0.8145 22 6 6.4392 -3.4640 -0.2069 23 6 2.1959 -1.1970 -0.0054 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6545 2.1318 0.0004 28 1 5.2518 2.4147 -0.0011 29 1 3.7950 3.2516 -0.0015 30 1 5.3618 0.0010 -0.0005 31 1 3.9012 -3.1895 0.4352 32 1 5.1213 -0.8816 -1.9806 33 1 7.2923 -1.0352 -3.0906 34 1 8.5889 -1.7840 -5.5040 35 1 8.3664 -4.3036 -0.4916 36 1 6.1861 -4.1377 0.5983 37 1 1.6541 -2.1313 -0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165837118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:20 Heat of formation + Delta-G solvation = 23.186848 kcal Electronic energy + Delta-G solvation = -19189.075423 eV Core-core repulsion = 16315.260209 eV Total energy + Delta-G solvation = -2873.815214 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.86207 -39.39374 -36.97922 -35.60586 -34.93688 -32.11283 -31.44011 -30.55057 -29.03652 -27.63820 -26.35155 -23.46336 -22.96265 -22.11160 -21.38275 -19.27661 -18.26220 -17.98069 -17.21428 -16.98424 -16.74436 -15.94832 -15.70812 -15.27773 -14.74644 -14.66570 -14.38488 -14.05117 -13.92372 -13.81354 -13.40618 -13.19762 -12.96443 -12.83199 -12.75347 -12.39836 -12.29695 -12.10587 -11.84550 -11.62881 -11.30432 -10.87569 -10.54179 -9.51167 -9.43634 -8.83064 -8.43637 -8.06507 -6.08440 0.58319 0.80277 1.10511 1.14948 1.37483 1.47952 1.60379 2.19513 2.62624 2.72290 3.08727 3.15708 3.75355 4.07723 4.39142 4.41167 4.45208 4.52536 4.60349 4.76943 4.81710 4.94281 4.99490 5.03215 5.15107 5.20316 5.25948 5.34272 5.49394 5.60229 5.61795 5.74979 5.87520 5.92058 6.05788 6.10970 6.30567 6.55925 6.67101 6.82262 6.94122 7.04819 7.08860 7.19065 8.22416 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025013 B = 0.004534 C = 0.004135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.139338 B = 6173.511404 C = 6769.896693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.013 4.013 3 C -0.250 4.250 4 C 0.242 3.758 5 N -0.870 5.870 6 C -0.274 4.274 7 C 0.230 3.770 8 N -0.675 5.675 9 C 0.041 3.959 10 C -0.120 4.120 11 C -0.182 4.182 12 C 0.068 3.932 13 C -0.510 4.510 14 H 0.077 0.923 15 C 0.052 3.948 16 N -0.803 5.803 17 Si 0.968 3.032 18 H -0.258 1.258 19 H -0.266 1.266 20 H -0.260 1.260 21 C -0.225 4.225 22 C -0.120 4.120 23 C -0.247 4.247 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.136 0.864 28 H 0.399 0.601 29 H 0.408 0.592 30 H 0.099 0.901 31 H 0.407 0.593 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.291 0.709 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.826 7.162 6.617 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.015 4.015 3 C -0.274 4.274 4 C 0.135 3.865 5 N -0.409 5.409 6 C -0.301 4.301 7 C 0.128 3.872 8 N -0.298 5.298 9 C -0.055 4.055 10 C -0.141 4.141 11 C -0.202 4.202 12 C 0.065 3.935 13 C -0.537 4.537 14 H 0.095 0.905 15 C -0.167 4.167 16 N -0.427 5.427 17 Si 0.788 3.212 18 H -0.182 1.182 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.245 4.245 22 C -0.141 4.141 23 C -0.271 4.271 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.154 0.846 28 H 0.228 0.772 29 H 0.238 0.762 30 H 0.117 0.883 31 H 0.243 0.757 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.842 7.221 6.308 14.473 hybrid contribution 1.126 0.089 -0.350 1.182 sum -9.717 7.309 5.957 13.540 Atomic orbital electron populations 1.20819 0.89020 1.03655 1.03007 1.19714 0.96976 0.91502 0.93269 1.20476 0.91267 0.98755 1.16933 1.17617 0.91732 0.86051 0.91082 1.42423 1.09195 1.04748 1.84576 1.20310 0.98915 0.91423 1.19473 1.17679 0.91206 0.85480 0.92785 1.41483 1.18229 1.10113 1.59976 1.17200 0.87786 1.02644 0.97846 1.20315 0.97005 1.00604 0.96163 1.20607 0.95503 1.01407 1.02660 1.17829 0.93044 0.90427 0.92213 1.19628 0.97583 1.34327 1.02199 0.90507 1.26721 1.02053 0.93083 0.94856 1.70016 1.36576 1.30812 1.05279 0.85456 0.77974 0.79084 0.78722 1.18193 1.19001 1.18404 1.20646 0.97663 1.02674 1.03528 1.20264 0.93265 1.00120 1.00412 1.20591 0.91295 0.98938 1.16270 0.90436 0.90729 0.90164 0.84576 0.77240 0.76221 0.88261 0.75680 0.88558 0.89253 0.89812 0.88068 0.86134 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 10.01 71.24 0.71 -1.19 16 2 C -0.01 -0.34 5.87 -19.91 -0.12 -0.46 16 3 C -0.25 -6.56 9.54 22.43 0.21 -6.34 16 4 C 0.24 7.23 6.75 38.19 0.26 7.49 16 5 N -0.87 -20.22 9.09 -51.42 -0.47 -20.69 16 6 C -0.27 -9.94 7.54 22.54 0.17 -9.77 16 7 C 0.23 8.17 5.92 38.24 0.23 8.39 16 8 N -0.68 -24.91 5.42 -180.25 -0.98 -25.89 16 9 C 0.04 1.81 6.07 38.69 0.23 2.04 16 10 C -0.12 -5.89 7.75 22.15 0.17 -5.71 16 11 C -0.18 -9.86 8.77 22.47 0.20 -9.66 16 12 C 0.07 3.73 5.61 -21.27 -0.12 3.61 16 13 C -0.51 -27.91 8.93 23.36 0.21 -27.70 16 14 H 0.08 4.07 8.03 -2.91 -0.02 4.05 16 15 C 0.05 2.64 4.74 85.22 0.40 3.04 16 16 N -0.80 -42.46 11.70 21.81 0.26 -42.20 16 17 Si 0.97 38.10 29.67 68.60 2.04 40.14 16 18 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 21 C -0.23 -11.23 9.74 22.47 0.22 -11.01 16 22 C -0.12 -5.32 9.87 22.15 0.22 -5.10 16 23 C -0.25 -7.41 9.61 22.43 0.22 -7.20 16 24 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.07 1.16 8.09 -2.39 -0.02 1.14 16 26 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 27 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 28 H 0.40 9.14 8.84 -92.71 -0.82 8.32 16 29 H 0.41 6.95 8.84 -92.71 -0.82 6.13 16 30 H 0.10 4.08 6.52 -2.91 -0.02 4.06 16 31 H 0.41 12.72 8.88 -92.71 -0.82 11.90 16 32 H 0.10 4.61 6.26 -2.91 -0.02 4.60 16 33 H 0.09 5.04 6.36 -2.91 -0.02 5.03 16 34 H 0.29 13.80 8.30 -92.70 -0.77 13.03 16 35 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 36 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.13 3.32 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -62.71 312.48 2.72 -59.99 By element: Atomic # 1 Polarization: 49.57 SS G_CDS: -1.34 Total: 48.23 kcal Atomic # 6 Polarization: -62.79 SS G_CDS: 3.21 Total: -59.58 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -1.19 Total: -88.78 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 2.04 Total: 40.14 kcal Total: -62.71 2.72 -59.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165837118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.180 kcal (2) G-P(sol) polarization free energy of solvation -62.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds