Wall clock time and date at job start Mon Mar 30 2020 07:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48498 * 109.46763 * 239.99823 * 3 2 1 5 5 H 1.48497 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47029 * 120.00073 * 3 2 1 7 7 C 1.37877 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47138 * 174.87745 * 9 7 2 11 11 C 1.38423 * 111.00014 * 63.82398 * 10 9 7 12 12 N 1.31954 * 120.15019 * 256.06058 * 11 10 9 13 13 C 1.32653 * 122.64643 * 179.97438 * 12 11 10 14 14 C 1.36062 * 121.99101 * 359.97438 * 13 12 11 15 15 C 1.40850 * 118.85859 * 0.02562 * 14 13 12 16 16 C 1.40184 * 122.17659 * 179.97438 * 15 14 13 17 17 C 1.36283 * 119.47568 * 180.02562 * 16 15 14 18 18 C 1.39284 * 120.97865 * 0.02562 * 17 16 15 19 19 C 1.36299 * 121.03878 * 359.97438 * 18 17 16 20 20 C 1.40093 * 119.53875 * 359.75128 * 19 18 17 21 21 C 1.46900 * 110.99675 * 299.87526 * 10 9 7 22 22 C 1.52998 * 117.49696 * 295.51773 * 21 10 9 23 23 C 1.52999 * 60.00219 * 252.51732 * 22 21 10 24 24 H 0.96995 * 119.99842 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47547 * 54.87340 * 9 7 2 26 26 H 1.09005 * 109.46623 * 294.87242 * 9 7 2 27 27 H 1.08004 * 119.00298 * 179.97438 * 13 12 11 28 28 H 1.08001 * 120.57063 * 180.02562 * 14 13 12 29 29 H 1.07997 * 120.25753 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.50793 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.48300 * 179.97438 * 18 17 16 32 32 H 1.08005 * 120.23077 * 180.02562 * 19 18 17 33 33 H 1.08995 * 115.56403 * 81.21490 * 21 10 9 34 34 H 1.09005 * 117.49575 * 145.01981 * 22 21 10 35 35 H 1.09006 * 117.49934 * 0.02562 * 22 21 10 36 36 H 1.09001 * 117.50137 * 107.49313 * 23 22 21 37 37 H 1.09010 * 117.49510 * 252.51012 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2009 -3.6130 -0.1225 11 6 3.0436 -3.6698 0.9742 12 7 4.2898 -3.2478 0.8751 13 6 5.1391 -3.2790 1.8936 14 6 4.7794 -3.7512 3.1179 15 6 3.4649 -4.2209 3.3060 16 6 3.0204 -4.7224 4.5373 17 6 1.7364 -5.1632 4.6577 18 6 0.8602 -5.1230 3.5757 19 6 1.2602 -4.6415 2.3650 20 6 2.5714 -4.1746 2.2063 21 6 2.9682 -3.5149 -1.3713 22 6 2.1966 -3.6416 -2.6864 23 6 3.1034 -4.7817 -2.2187 24 1 -0.4850 0.8400 0.0004 25 1 0.5577 -2.5184 -0.8402 26 1 0.6947 -2.5974 0.9328 27 1 6.1466 -2.9186 1.7466 28 1 5.4895 -3.7656 3.9315 29 1 3.6902 -4.7593 5.3836 30 1 1.3935 -5.5501 5.6059 31 1 -0.1521 -5.4790 3.6980 32 1 0.5697 -4.6160 1.5349 33 1 3.8167 -2.8311 -1.3495 34 1 2.5374 -3.0410 -3.5298 35 1 1.1194 -3.7974 -2.6249 36 1 2.6230 -5.6878 -1.8495 37 1 4.0409 -4.9312 -2.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168629245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:31 Heat of formation + Delta-G solvation = 94.098689 kcal Electronic energy + Delta-G solvation = -20272.277744 eV Core-core repulsion = 17401.537498 eV Total energy + Delta-G solvation = -2870.740246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.50071 -37.94088 -36.49455 -34.23134 -32.63859 -31.16296 -30.55581 -28.79732 -26.49753 -23.61293 -23.43229 -22.47111 -21.68058 -21.35342 -19.60862 -17.40988 -17.10536 -16.38415 -16.04809 -15.37556 -14.93552 -14.50391 -14.19334 -13.89399 -13.32431 -13.30120 -13.18195 -12.55222 -12.38543 -12.27990 -11.47687 -11.39640 -11.32444 -11.06227 -10.95291 -10.79900 -10.49129 -10.25599 -10.06943 -9.70689 -9.54429 -9.30746 -8.83485 -8.64095 -8.47077 -8.09910 -7.12845 -6.09682 -4.15522 0.92126 1.39973 2.42683 3.29001 3.32685 3.37062 3.54074 4.30305 4.39076 4.52264 4.64207 4.97673 5.04707 5.23827 5.24974 5.30879 5.43586 5.55913 5.64129 5.65573 5.70517 5.77137 6.06009 6.16511 6.19456 6.25535 6.35391 6.43153 6.49893 6.69757 6.73375 6.78488 6.85611 6.99744 7.18409 7.26765 7.34415 7.60229 7.86541 8.09251 8.17440 8.71137 8.93107 9.50463 10.97206 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.007881 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.775758 B = 3552.216865 C = 4070.109674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.892 3.108 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.069 0.931 9 C 0.196 3.804 10 N -0.466 5.466 11 C 0.405 3.595 12 N -0.532 5.532 13 C 0.115 3.885 14 C -0.214 4.214 15 C -0.004 4.004 16 C -0.132 4.132 17 C -0.094 4.094 18 C -0.151 4.151 19 C -0.049 4.049 20 C -0.108 4.108 21 C 0.047 3.953 22 C -0.165 4.165 23 C -0.184 4.184 24 H 0.264 0.736 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.142 0.858 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -9.827 4.658 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.585 4.585 8 H 0.087 0.913 9 C 0.075 3.925 10 N -0.184 5.184 11 C 0.161 3.839 12 N -0.246 5.246 13 C -0.031 4.031 14 C -0.235 4.235 15 C -0.009 4.009 16 C -0.150 4.150 17 C -0.113 4.113 18 C -0.169 4.169 19 C -0.069 4.069 20 C -0.112 4.112 21 C -0.061 4.061 22 C -0.202 4.202 23 C -0.222 4.222 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.159 0.841 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.670 -9.772 3.845 11.492 hybrid contribution 0.568 1.465 0.909 1.815 sum 5.238 -8.307 4.754 10.910 Atomic orbital electron populations 1.69920 1.05966 1.27119 1.49964 1.24908 0.94766 0.99149 0.94733 0.86641 0.79642 0.82947 0.78775 1.20089 1.21214 1.20311 1.21768 0.94051 0.91138 1.51592 0.91274 1.19999 0.89607 0.84114 0.98823 1.59609 1.15457 1.44305 0.99042 1.19960 0.88535 0.86117 0.89270 1.67630 1.05137 1.18026 1.33792 1.21891 0.98124 0.94529 0.88566 1.21510 0.95957 1.06934 0.99143 1.18025 0.93462 0.96199 0.93221 1.20787 0.96548 1.01495 0.96214 1.20866 0.93705 0.98296 0.98461 1.20811 0.99869 1.02936 0.93285 1.21106 0.94436 0.93542 0.97786 1.18489 0.95478 1.03607 0.93641 1.22027 0.99092 0.98860 0.86155 1.22881 0.98515 1.01285 0.97544 1.23058 1.01011 0.93702 1.04430 0.92684 0.93224 0.94542 0.84081 0.85604 0.85890 0.86366 0.86151 0.84511 0.87226 0.89222 0.88728 0.89282 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 2 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.55 -14.98 7.93 -34.44 -0.27 -15.25 16 8 H 0.07 1.95 6.33 -52.49 -0.33 1.61 16 9 C 0.20 4.89 4.56 -4.98 -0.02 4.87 16 10 N -0.47 -10.08 4.22 -166.60 -0.70 -10.78 16 11 C 0.40 8.69 5.18 -155.14 -0.80 7.89 16 12 N -0.53 -11.17 7.91 -12.46 -0.10 -11.27 16 13 C 0.11 2.04 11.06 -17.98 -0.20 1.84 16 14 C -0.21 -3.50 9.87 -39.38 -0.39 -3.89 16 15 C 0.00 -0.07 5.74 -106.83 -0.61 -0.68 16 16 C -0.13 -1.93 9.81 -39.55 -0.39 -2.32 16 17 C -0.09 -1.29 9.95 -39.90 -0.40 -1.68 16 18 C -0.15 -2.25 9.95 -39.89 -0.40 -2.65 16 19 C -0.05 -0.88 8.59 -39.58 -0.34 -1.22 16 20 C -0.11 -2.14 5.63 -106.70 -0.60 -2.74 16 21 C 0.05 0.95 3.80 -67.71 -0.26 0.70 16 22 C -0.16 -2.95 9.86 -26.73 -0.26 -3.21 16 23 C -0.18 -3.07 10.46 -26.73 -0.28 -3.35 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.05 1.30 7.40 -51.93 -0.38 0.92 16 26 H 0.04 0.96 6.49 -51.93 -0.34 0.62 16 27 H 0.14 2.05 8.06 -52.48 -0.42 1.63 16 28 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.14 2.48 6.80 -52.48 -0.36 2.12 16 33 H 0.11 2.43 6.86 -51.93 -0.36 2.07 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.72 7.79 -51.93 -0.40 1.32 16 36 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -29.98 308.82 -10.44 -40.43 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -4.69 Total: 5.01 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -5.32 Total: -19.92 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.06 Total: -47.00 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.98 -10.44 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168629245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.524 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds