Wall clock time and date at job start Mon Mar 30 2020 07:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99814 * 2 1 4 4 H 1.48498 * 109.46763 * 239.99823 * 3 2 1 5 5 H 1.48497 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47029 * 120.00073 * 3 2 1 7 7 C 1.37877 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99766 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99930 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47138 * 174.87745 * 9 7 2 11 11 C 1.38423 * 111.00014 * 63.82398 * 10 9 7 12 12 N 1.31954 * 120.15019 * 256.06058 * 11 10 9 13 13 C 1.32653 * 122.64643 * 179.97438 * 12 11 10 14 14 C 1.36062 * 121.99101 * 359.97438 * 13 12 11 15 15 C 1.40850 * 118.85859 * 0.02562 * 14 13 12 16 16 C 1.40184 * 122.17659 * 179.97438 * 15 14 13 17 17 C 1.36283 * 119.47568 * 180.02562 * 16 15 14 18 18 C 1.39284 * 120.97865 * 0.02562 * 17 16 15 19 19 C 1.36299 * 121.03878 * 359.97438 * 18 17 16 20 20 C 1.40093 * 119.53875 * 359.75128 * 19 18 17 21 21 C 1.46900 * 110.99675 * 299.87526 * 10 9 7 22 22 C 1.52998 * 117.49696 * 295.51773 * 21 10 9 23 23 C 1.52999 * 60.00219 * 252.51732 * 22 21 10 24 24 H 0.96995 * 119.99842 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47547 * 54.87340 * 9 7 2 26 26 H 1.09005 * 109.46623 * 294.87242 * 9 7 2 27 27 H 1.08004 * 119.00298 * 179.97438 * 13 12 11 28 28 H 1.08001 * 120.57063 * 180.02562 * 14 13 12 29 29 H 1.07997 * 120.25753 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.50793 * 179.97438 * 17 16 15 31 31 H 1.07997 * 119.48300 * 179.97438 * 18 17 16 32 32 H 1.08005 * 120.23077 * 180.02562 * 19 18 17 33 33 H 1.08995 * 115.56403 * 81.21490 * 21 10 9 34 34 H 1.09005 * 117.49575 * 145.01981 * 22 21 10 35 35 H 1.09006 * 117.49934 * 0.02562 * 22 21 10 36 36 H 1.09001 * 117.50137 * 107.49313 * 23 22 21 37 37 H 1.09010 * 117.49510 * 252.51012 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2009 -3.6130 -0.1225 11 6 3.0436 -3.6698 0.9742 12 7 4.2898 -3.2478 0.8751 13 6 5.1391 -3.2790 1.8936 14 6 4.7794 -3.7512 3.1179 15 6 3.4649 -4.2209 3.3060 16 6 3.0204 -4.7224 4.5373 17 6 1.7364 -5.1632 4.6577 18 6 0.8602 -5.1230 3.5757 19 6 1.2602 -4.6415 2.3650 20 6 2.5714 -4.1746 2.2063 21 6 2.9682 -3.5149 -1.3713 22 6 2.1966 -3.6416 -2.6864 23 6 3.1034 -4.7817 -2.2187 24 1 -0.4850 0.8400 0.0004 25 1 0.5577 -2.5184 -0.8402 26 1 0.6947 -2.5974 0.9328 27 1 6.1466 -2.9186 1.7466 28 1 5.4895 -3.7656 3.9315 29 1 3.6902 -4.7593 5.3836 30 1 1.3935 -5.5501 5.6059 31 1 -0.1521 -5.4790 3.6980 32 1 0.5697 -4.6160 1.5349 33 1 3.8167 -2.8311 -1.3495 34 1 2.5374 -3.0410 -3.5298 35 1 1.1194 -3.7974 -2.6249 36 1 2.6230 -5.6878 -1.8495 37 1 4.0409 -4.9312 -2.7544 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168629245.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:30 Heat of formation + Delta-G solvation = 78.074782 kcal Electronic energy + Delta-G solvation = -20272.972592 eV Core-core repulsion = 17401.537498 eV Total energy + Delta-G solvation = -2871.435094 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.87427 -39.39811 -37.83596 -35.82863 -34.57278 -32.60298 -31.84376 -30.26335 -28.36746 -25.26889 -24.77554 -24.01806 -23.11541 -22.73148 -21.14744 -19.00750 -18.49974 -17.96122 -17.66577 -16.99460 -16.52313 -15.86099 -15.77935 -15.33841 -14.89408 -14.62588 -14.45361 -14.27345 -13.94842 -13.72150 -13.20842 -12.99030 -12.82966 -12.65134 -12.55156 -12.27912 -12.15777 -12.08663 -11.83868 -11.26771 -11.00109 -10.86250 -10.63018 -10.28698 -9.94893 -9.63005 -8.57658 -8.19730 -6.35263 -0.39638 0.10693 1.10232 1.31812 1.32724 1.41263 2.25086 2.34251 2.81436 3.02262 3.10451 3.28337 3.68865 3.82320 4.02945 4.07402 4.15700 4.16362 4.24133 4.39519 4.45094 4.58815 4.62991 4.79710 4.85682 4.98012 5.00335 5.07583 5.18282 5.24247 5.24662 5.30903 5.33853 5.56547 5.59685 5.66880 5.73798 5.89576 6.05951 6.09958 6.53910 6.78507 7.27927 7.34256 8.83215 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014666 B = 0.007881 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.775758 B = 3552.216865 C = 4070.109674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.019 3.981 3 Si 0.950 3.050 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.279 1.279 7 C -0.551 4.551 8 H 0.057 0.943 9 C 0.217 3.783 10 N -0.461 5.461 11 C 0.366 3.634 12 N -0.553 5.553 13 C 0.081 3.919 14 C -0.191 4.191 15 C -0.031 4.031 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.086 4.086 20 C -0.131 4.131 21 C 0.016 3.984 22 C -0.164 4.164 23 C -0.151 4.151 24 H 0.266 0.734 25 H 0.027 0.973 26 H 0.015 0.985 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.162 0.838 30 H 0.163 0.837 31 H 0.148 0.852 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.978 -10.704 6.839 14.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.205 1.205 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.093 3.907 10 N -0.179 5.179 11 C 0.123 3.877 12 N -0.267 5.267 13 C -0.064 4.064 14 C -0.211 4.211 15 C -0.037 4.037 16 C -0.142 4.142 17 C -0.110 4.110 18 C -0.154 4.154 19 C -0.106 4.106 20 C -0.135 4.135 21 C -0.093 4.093 22 C -0.201 4.201 23 C -0.188 4.188 24 H 0.075 0.925 25 H 0.046 0.954 26 H 0.033 0.967 27 H 0.185 0.815 28 H 0.185 0.815 29 H 0.179 0.821 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.103 0.897 34 H 0.120 0.880 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.911 -10.664 6.031 13.603 hybrid contribution 0.229 1.635 0.385 1.696 sum 6.140 -9.029 6.416 12.664 Atomic orbital electron populations 1.70019 1.07098 1.27875 1.50994 1.25650 0.95586 1.02228 0.94641 0.85728 0.78561 0.79486 0.78633 1.19570 1.20178 1.20457 1.21937 0.93582 0.92448 1.50975 0.92484 1.19517 0.89814 0.84843 0.96510 1.59523 1.15644 1.42726 0.99984 1.20096 0.89009 0.88584 0.89979 1.67529 1.05487 1.18098 1.35600 1.22405 0.98999 0.96131 0.88887 1.21982 0.96029 1.03652 0.99478 1.18480 0.93873 0.97324 0.93993 1.21258 0.97575 0.99580 0.95801 1.21362 0.93055 0.97086 0.99546 1.21232 1.01410 1.00367 0.92352 1.21089 0.94091 0.96433 0.99002 1.18780 0.96723 1.04107 0.93897 1.22008 0.99194 1.01385 0.86685 1.22928 0.98245 1.02256 0.96689 1.23081 1.01453 0.92445 1.01861 0.92542 0.95450 0.96709 0.81491 0.81454 0.82055 0.81964 0.83468 0.86353 0.89722 0.87973 0.89530 0.88795 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 13.29 21.45 0.28 -54.33 16 2 C 0.02 1.08 5.46 84.65 0.46 1.54 16 3 Si 0.95 45.65 29.54 68.60 2.03 47.67 16 4 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.55 -31.49 7.93 25.60 0.20 -31.28 16 8 H 0.06 3.35 6.33 -2.91 -0.02 3.34 16 9 C 0.22 11.49 4.56 85.56 0.39 11.88 16 10 N -0.46 -21.08 4.22 -681.01 -2.87 -23.95 16 11 C 0.37 16.39 5.18 133.92 0.69 17.09 16 12 N -0.55 -23.91 7.91 -193.32 -1.53 -25.44 16 13 C 0.08 2.82 11.06 84.06 0.93 3.75 16 14 C -0.19 -5.81 9.87 22.40 0.22 -5.59 16 15 C -0.03 -1.06 5.74 -21.30 -0.12 -1.18 16 16 C -0.12 -3.15 9.81 22.29 0.22 -2.93 16 17 C -0.09 -2.14 9.95 22.07 0.22 -1.92 16 18 C -0.14 -3.81 9.95 22.07 0.22 -3.59 16 19 C -0.09 -3.18 8.59 22.27 0.19 -2.99 16 20 C -0.13 -5.29 5.63 -21.21 -0.12 -5.41 16 21 C 0.02 0.66 3.80 44.92 0.17 0.83 16 22 C -0.16 -6.01 9.86 30.59 0.30 -5.71 16 23 C -0.15 -5.02 10.46 30.59 0.32 -4.70 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H 0.03 1.54 7.40 -2.39 -0.02 1.52 16 26 H 0.01 0.84 6.49 -2.38 -0.02 0.82 16 27 H 0.17 4.68 8.06 -2.91 -0.02 4.65 16 28 H 0.17 3.56 8.06 -2.91 -0.02 3.53 16 29 H 0.16 2.81 8.06 -2.91 -0.02 2.78 16 30 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.15 3.24 8.06 -2.91 -0.02 3.21 16 32 H 0.12 4.64 6.80 -2.91 -0.02 4.62 16 33 H 0.08 3.97 6.86 -2.39 -0.02 3.95 16 34 H 0.10 3.43 8.14 -2.38 -0.02 3.41 16 35 H 0.09 3.29 7.79 -2.38 -0.02 3.28 16 36 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 37 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 Total: -1.00 -68.44 308.82 3.28 -65.17 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 1.07 Total: 21.07 kcal Atomic # 6 Polarization: -34.49 SS G_CDS: 4.30 Total: -30.20 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -4.12 Total: -103.72 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -68.44 3.28 -65.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168629245.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.242 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds