Wall clock time and date at job start Mon Mar 30 2020 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00557 * 2 1 4 4 C 1.52993 * 109.47277 * 66.04427 * 3 2 1 5 5 C 1.53002 * 109.47333 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47296 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99763 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00351 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00444 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99837 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47173 * 90.00120 * 10 8 6 12 12 H 1.48504 * 109.47462 * 210.00109 * 10 8 6 13 13 H 1.48498 * 109.47208 * 330.00186 * 10 8 6 14 14 C 1.46908 * 110.99588 * 236.04597 * 2 1 3 15 15 C 1.50705 * 109.46795 * 293.95479 * 14 2 1 16 16 C 1.38705 * 120.40098 * 90.00428 * 15 14 2 17 17 C 1.38565 * 118.43594 * 180.02562 * 16 15 14 18 18 C 1.38398 * 119.14885 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.63252 * 180.02562 * 18 17 16 20 20 N 1.31943 * 120.73083 * 359.97438 * 18 17 16 21 21 C 1.31905 * 121.70686 * 0.04743 * 20 18 17 22 22 H 1.08996 * 109.47667 * 183.95378 * 1 2 3 23 23 H 1.09006 * 109.47198 * 303.95653 * 1 2 3 24 24 H 1.09003 * 109.46925 * 63.94858 * 1 2 3 25 25 H 1.08998 * 109.47203 * 186.04984 * 3 2 1 26 26 H 1.09002 * 109.47182 * 306.04475 * 3 2 1 27 27 H 1.08998 * 109.47459 * 300.00400 * 4 3 2 28 28 H 1.09002 * 109.46975 * 59.99921 * 4 3 2 29 29 H 1.09006 * 109.46942 * 300.00135 * 5 4 3 30 30 H 1.08993 * 109.46994 * 60.00392 * 5 4 3 31 31 H 0.97002 * 120.00127 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46546 * 173.96015 * 14 2 1 33 33 H 1.08993 * 109.47316 * 53.95253 * 14 2 1 34 34 H 1.08001 * 120.78816 * 359.97438 * 16 15 14 35 35 H 1.08000 * 120.42478 * 179.72686 * 17 16 15 36 36 H 1.08007 * 119.60917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1795 3.4859 1.3179 6 6 1.8215 4.1615 2.6166 7 1 1.2591 3.6256 3.3669 8 6 2.2111 5.4639 2.8465 9 7 1.8983 6.0536 3.9796 10 14 3.1832 6.3909 1.5484 11 1 2.2459 7.0943 0.6364 12 1 4.0697 7.3829 2.2083 13 1 4.0070 5.4326 0.7686 14 6 1.9953 -0.7660 -1.1377 15 6 1.6367 -2.2205 -0.9729 16 6 0.4490 -2.7138 -1.4924 17 6 0.1597 -4.0575 -1.3168 18 6 1.0596 -4.8572 -0.6340 19 17 0.7101 -6.5425 -0.4073 20 7 2.1806 -4.3530 -0.1543 21 6 2.4871 -3.0787 -0.3030 22 1 -0.3634 -1.0251 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0798 1.3442 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 0.5473 2.0845 1.4265 28 1 2.0659 1.5014 2.1491 29 1 3.2638 3.4592 1.2095 30 1 1.7448 4.0416 0.4871 31 1 2.1727 6.9698 4.1415 32 1 3.0796 -0.6612 -1.1756 33 1 1.5610 -0.3874 -2.0628 34 1 -0.2347 -2.0658 -2.0206 35 1 -0.7581 -4.4746 -1.7042 36 1 3.4139 -2.7018 0.1038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177626641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:59 Heat of formation + Delta-G solvation = 21.965106 kcal Electronic energy + Delta-G solvation = -17325.633416 eV Core-core repulsion = 14449.332374 eV Total energy + Delta-G solvation = -2876.301042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.64306 -37.82401 -36.84477 -34.11864 -32.89881 -32.09183 -31.06870 -27.52096 -27.35619 -24.54595 -23.99350 -22.30749 -21.04229 -19.97033 -17.69480 -17.05588 -16.73554 -15.75279 -15.69862 -15.14502 -14.57346 -14.41157 -14.09933 -13.74990 -13.68010 -13.33629 -12.67122 -12.42503 -12.01999 -11.94773 -11.73170 -11.65753 -11.55696 -11.44895 -10.98080 -10.72288 -10.22310 -9.96748 -9.90835 -9.70445 -9.62497 -9.19234 -9.12912 -8.54106 -8.28231 -6.04224 -4.02207 0.60192 0.85628 1.53526 3.28580 3.29407 3.37119 3.40206 4.06104 4.19447 4.42575 4.44571 4.54802 4.59887 4.73528 5.10445 5.26339 5.29567 5.35477 5.39588 5.49839 5.53617 5.66687 5.75495 5.88865 5.99270 6.11232 6.19377 6.49372 6.51276 6.86191 7.09478 7.13583 7.33276 7.43540 7.43834 7.79794 8.54725 9.01356 9.58199 11.09361 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.047880 B = 0.002874 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.655572 B = 9739.028985 C = 9846.715307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.537 5.537 3 C 0.054 3.946 4 C -0.098 4.098 5 C -0.013 4.013 6 C -0.519 4.519 7 H 0.072 0.928 8 C 0.065 3.935 9 N -0.904 5.904 10 Si 0.881 3.119 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.266 1.266 14 C 0.093 3.907 15 C -0.118 4.118 16 C -0.058 4.058 17 C -0.155 4.155 18 C 0.170 3.830 19 Cl -0.038 7.038 20 N -0.479 5.479 21 C 0.139 3.861 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.024 0.976 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.016 0.984 30 H 0.008 0.992 31 H 0.263 0.737 32 H 0.089 0.911 33 H 0.046 0.954 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -20.518 -14.545 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.051 4.051 6 C -0.557 4.557 7 H 0.090 0.910 8 C -0.136 4.136 9 N -0.543 5.543 10 Si 0.708 3.292 11 H -0.204 1.204 12 H -0.214 1.214 13 H -0.190 1.190 14 C -0.035 4.035 15 C -0.120 4.120 16 C -0.085 4.085 17 C -0.176 4.176 18 C 0.006 3.994 19 Cl -0.009 7.009 20 N -0.189 5.189 21 C -0.018 4.018 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.027 0.973 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.923 -21.274 -13.546 25.293 hybrid contribution -0.452 1.379 -1.682 2.221 sum -2.375 -19.895 -15.228 25.166 Atomic orbital electron populations 1.22513 0.87573 1.01663 1.01262 1.62069 1.08092 1.15071 1.40811 1.22365 0.99679 0.85992 0.99284 1.21488 1.00587 0.96899 0.94601 1.19549 0.96060 0.92045 0.97420 1.21141 1.35535 0.97831 1.01192 0.91035 1.25047 0.95672 0.97551 0.95335 1.69921 1.47038 1.13240 1.24150 0.86766 0.80542 0.79790 0.82088 1.20407 1.21405 1.19017 1.21013 1.01222 0.88316 0.92945 1.20935 0.95323 0.97419 0.98351 1.21545 0.95902 0.94384 0.96643 1.21794 1.00743 0.93991 1.01079 1.21643 0.92571 0.87777 0.97428 1.98404 1.93492 1.13150 1.95879 1.67046 1.17600 1.15287 1.18962 1.22625 0.99350 0.86435 0.93386 0.91998 0.90195 0.95770 0.90990 0.95123 0.92801 0.91878 0.96616 0.97331 0.92760 0.89239 0.93593 0.84016 0.83825 0.81499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.97 60.06 0.54 0.75 16 2 N -0.54 -6.93 4.75 -244.37 -1.16 -8.09 16 3 C 0.05 0.81 4.96 -3.83 -0.02 0.79 16 4 C -0.10 -1.88 5.08 -26.73 -0.14 -2.01 16 5 C -0.01 -0.30 4.04 -27.88 -0.11 -0.41 16 6 C -0.52 -14.78 9.66 -34.44 -0.33 -15.11 16 7 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 8 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 9 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 10 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.09 0.93 5.14 -4.97 -0.03 0.91 16 15 C -0.12 -1.15 4.89 -104.48 -0.51 -1.66 16 16 C -0.06 -0.49 8.15 -39.29 -0.32 -0.81 16 17 C -0.16 -1.34 9.88 -39.40 -0.39 -1.73 16 18 C 0.17 1.83 7.27 -17.44 -0.13 1.71 16 19 Cl -0.04 -0.37 29.11 -51.86 -1.51 -1.88 16 20 N -0.48 -5.79 10.34 -10.36 -0.11 -5.90 16 21 C 0.14 1.49 10.86 -17.55 -0.19 1.30 16 22 H 0.06 0.67 6.17 -51.93 -0.32 0.35 16 23 H 0.08 1.08 6.30 -51.93 -0.33 0.75 16 24 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 1.04 7.93 -51.93 -0.41 0.62 16 26 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.05 1.04 6.47 -51.93 -0.34 0.70 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 33 H 0.05 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.17 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 313.24 15.07 4.72 4.72 Total: -1.00 -31.44 313.24 -8.79 -40.23 By element: Atomic # 1 Polarization: 0.82 SS G_CDS: -5.11 Total: -4.30 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -1.72 Total: -14.50 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: -0.50 Total: -41.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.51 Total: -1.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.44 -8.79 -40.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177626641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.195 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds