Wall clock time and date at job start Mon Mar 30 2020 06:52:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46894 * 111.00557 * 2 1 4 4 C 1.52993 * 109.47277 * 66.04427 * 3 2 1 5 5 C 1.53002 * 109.47333 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47296 * 180.02562 * 5 4 3 7 7 H 1.08002 * 119.99763 * 359.97438 * 6 5 4 8 8 C 1.37870 * 120.00351 * 180.02562 * 6 5 4 9 9 N 1.31520 * 120.00444 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 119.99837 * 359.97438 * 8 6 5 11 11 H 1.48502 * 109.47173 * 90.00120 * 10 8 6 12 12 H 1.48504 * 109.47462 * 210.00109 * 10 8 6 13 13 H 1.48498 * 109.47208 * 330.00186 * 10 8 6 14 14 C 1.46908 * 110.99588 * 236.04597 * 2 1 3 15 15 C 1.50705 * 109.46795 * 293.95479 * 14 2 1 16 16 C 1.38705 * 120.40098 * 90.00428 * 15 14 2 17 17 C 1.38565 * 118.43594 * 180.02562 * 16 15 14 18 18 C 1.38398 * 119.14885 * 359.97438 * 17 16 15 19 19 Cl 1.73605 * 119.63252 * 180.02562 * 18 17 16 20 20 N 1.31943 * 120.73083 * 359.97438 * 18 17 16 21 21 C 1.31905 * 121.70686 * 0.04743 * 20 18 17 22 22 H 1.08996 * 109.47667 * 183.95378 * 1 2 3 23 23 H 1.09006 * 109.47198 * 303.95653 * 1 2 3 24 24 H 1.09003 * 109.46925 * 63.94858 * 1 2 3 25 25 H 1.08998 * 109.47203 * 186.04984 * 3 2 1 26 26 H 1.09002 * 109.47182 * 306.04475 * 3 2 1 27 27 H 1.08998 * 109.47459 * 300.00400 * 4 3 2 28 28 H 1.09002 * 109.46975 * 59.99921 * 4 3 2 29 29 H 1.09006 * 109.46942 * 300.00135 * 5 4 3 30 30 H 1.08993 * 109.46994 * 60.00392 * 5 4 3 31 31 H 0.97002 * 120.00127 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46546 * 173.96015 * 14 2 1 33 33 H 1.08993 * 109.47316 * 53.95253 * 14 2 1 34 34 H 1.08001 * 120.78816 * 359.97438 * 16 15 14 35 35 H 1.08000 * 120.42478 * 179.72686 * 17 16 15 36 36 H 1.08007 * 119.60917 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6316 2.0574 1.3182 5 6 2.1795 3.4859 1.3179 6 6 1.8215 4.1615 2.6166 7 1 1.2591 3.6256 3.3669 8 6 2.2111 5.4639 2.8465 9 7 1.8983 6.0536 3.9796 10 14 3.1832 6.3909 1.5484 11 1 2.2459 7.0943 0.6364 12 1 4.0697 7.3829 2.2083 13 1 4.0070 5.4326 0.7686 14 6 1.9953 -0.7660 -1.1377 15 6 1.6367 -2.2205 -0.9729 16 6 0.4490 -2.7138 -1.4924 17 6 0.1597 -4.0575 -1.3168 18 6 1.0596 -4.8572 -0.6340 19 17 0.7101 -6.5425 -0.4073 20 7 2.1806 -4.3530 -0.1543 21 6 2.4871 -3.0787 -0.3030 22 1 -0.3634 -1.0251 0.0709 23 1 -0.3634 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0798 1.3442 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 0.5473 2.0845 1.4265 28 1 2.0659 1.5014 2.1491 29 1 3.2638 3.4592 1.2095 30 1 1.7448 4.0416 0.4871 31 1 2.1727 6.9698 4.1415 32 1 3.0796 -0.6612 -1.1756 33 1 1.5610 -0.3874 -2.0628 34 1 -0.2347 -2.0658 -2.0206 35 1 -0.7581 -4.4746 -1.7042 36 1 3.4139 -2.7018 0.1038 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177626641.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:59 Heat of formation + Delta-G solvation = 1.603740 kcal Electronic energy + Delta-G solvation = -17326.516351 eV Core-core repulsion = 14449.332374 eV Total energy + Delta-G solvation = -2877.183977 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38223 -38.82717 -37.61686 -35.76673 -34.17665 -33.25617 -32.31727 -28.99534 -28.31498 -25.83025 -24.74074 -23.55951 -22.13715 -21.49689 -18.87126 -18.40176 -17.80956 -16.83234 -16.54872 -16.36123 -15.98139 -15.38589 -15.22046 -15.01737 -14.69721 -14.43122 -14.14391 -13.67178 -13.40303 -13.13883 -12.74842 -12.69671 -12.54512 -12.49653 -12.32710 -12.21753 -11.78268 -11.50069 -11.38806 -11.19784 -10.92605 -10.74346 -10.63356 -9.90515 -9.22889 -8.27638 -6.32155 -0.13532 0.16535 0.79843 1.37536 1.40249 1.52310 2.38311 2.51686 3.07851 3.15329 3.48525 3.70754 3.86095 3.94210 4.01276 4.16200 4.30408 4.47150 4.49942 4.62728 4.73230 4.73686 4.79949 4.86846 4.93051 5.01408 5.04119 5.14773 5.19838 5.50152 5.56612 5.63794 5.69301 6.09504 6.15833 6.32357 6.69083 6.76904 7.32563 8.89571 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.047880 B = 0.002874 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.655572 B = 9739.028985 C = 9846.715307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.551 5.551 3 C 0.066 3.934 4 C -0.090 4.090 5 C -0.010 4.010 6 C -0.533 4.533 7 H 0.026 0.974 8 C -0.001 4.001 9 N -0.956 5.956 10 Si 0.956 3.044 11 H -0.266 1.266 12 H -0.286 1.286 13 H -0.241 1.241 14 C 0.097 3.903 15 C -0.120 4.120 16 C -0.053 4.053 17 C -0.150 4.150 18 C 0.152 3.848 19 Cl -0.038 7.038 20 N -0.509 5.509 21 C 0.126 3.874 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.266 0.734 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.368 -20.698 -17.567 27.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.275 5.275 3 C -0.061 4.061 4 C -0.128 4.128 5 C -0.048 4.048 6 C -0.572 4.572 7 H 0.044 0.956 8 C -0.197 4.197 9 N -0.596 5.596 10 Si 0.779 3.221 11 H -0.191 1.191 12 H -0.212 1.212 13 H -0.164 1.164 14 C -0.030 4.030 15 C -0.123 4.123 16 C -0.080 4.080 17 C -0.170 4.170 18 C -0.012 4.012 19 Cl -0.010 7.010 20 N -0.220 5.220 21 C -0.031 4.031 22 H 0.092 0.908 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.186 0.814 35 H 0.187 0.813 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.649 -21.488 -16.581 27.191 hybrid contribution -0.616 1.357 -0.648 1.625 sum -2.265 -20.131 -17.229 26.594 Atomic orbital electron populations 1.22488 0.87172 1.02168 1.01033 1.61943 1.08625 1.13979 1.42948 1.22086 1.00424 0.87035 0.96537 1.21304 0.99707 0.94920 0.96867 1.19494 0.96546 0.94040 0.94673 1.21543 1.34834 0.98198 1.02577 0.95554 1.26114 0.96985 0.98727 0.97914 1.70092 1.48872 1.13890 1.26794 0.85577 0.79125 0.78447 0.78989 1.19095 1.21237 1.16434 1.21038 1.01853 0.87771 0.92368 1.20945 0.95722 0.97140 0.98446 1.21866 0.95633 0.94564 0.95908 1.22081 1.01039 0.93929 1.00000 1.21932 0.92952 0.88153 0.98178 1.98398 1.93428 1.13242 1.95939 1.66992 1.18708 1.16144 1.20150 1.22812 1.00070 0.86339 0.93887 0.90811 0.92501 0.94193 0.89977 0.94093 0.93640 0.93701 0.95918 0.96175 0.92562 0.88334 0.91776 0.81419 0.81338 0.80952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 8.97 127.69 1.15 1.57 16 2 N -0.55 -12.89 4.75 -927.06 -4.41 -17.30 16 3 C 0.07 1.83 4.96 86.30 0.43 2.25 16 4 C -0.09 -3.40 5.08 30.59 0.16 -3.25 16 5 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 6 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 7 H 0.03 1.70 7.99 -2.91 -0.02 1.68 16 8 C 0.00 -0.08 5.47 84.65 0.46 0.39 16 9 N -0.96 -60.70 13.96 21.45 0.30 -60.40 16 10 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 14 C 0.10 1.63 5.14 85.56 0.44 2.07 16 15 C -0.12 -2.04 4.89 -19.77 -0.10 -2.13 16 16 C -0.05 -0.74 8.15 22.46 0.18 -0.55 16 17 C -0.15 -2.22 9.88 22.39 0.22 -2.00 16 18 C 0.15 3.08 7.27 84.71 0.62 3.70 16 19 Cl -0.04 -0.72 29.11 -2.72 -0.08 -0.80 16 20 N -0.51 -11.96 10.34 -186.69 -1.93 -13.89 16 21 C 0.13 2.54 10.86 84.66 0.92 3.46 16 22 H 0.07 1.41 6.17 -2.39 -0.01 1.39 16 23 H 0.06 1.49 6.30 -2.38 -0.02 1.48 16 24 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.08 2.10 7.93 -2.39 -0.02 2.08 16 26 H 0.04 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.04 1.77 6.47 -2.39 -0.02 1.75 16 28 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.02 1.00 7.20 -2.38 -0.02 0.98 16 30 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 31 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 32 H 0.10 1.48 7.88 -2.39 -0.02 1.46 16 33 H 0.06 0.88 8.07 -2.39 -0.02 0.86 16 34 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 35 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -69.56 313.24 1.61 -67.94 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: 1.00 Total: 4.39 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 4.84 Total: -25.64 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -6.04 Total: -91.59 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.80 kcal Total: -69.56 1.61 -67.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177626641.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.548 kcal (2) G-P(sol) polarization free energy of solvation -69.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds