Wall clock time and date at job start Mon Mar 30 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47108 * 2 1 4 4 H 1.08996 * 109.47105 * 305.16926 * 3 2 1 5 5 C 1.50699 * 109.46613 * 185.17145 * 3 2 1 6 6 H 1.08006 * 119.99768 * 244.94261 * 5 3 2 7 7 C 1.37873 * 120.00437 * 64.94592 * 5 3 2 8 8 N 1.31517 * 119.99924 * 7.03134 * 7 5 3 9 9 Si 1.86802 * 120.00337 * 187.02845 * 7 5 3 10 10 H 1.48496 * 109.47179 * 84.99112 * 9 7 5 11 11 H 1.48500 * 109.46886 * 204.99485 * 9 7 5 12 12 H 1.48499 * 109.47109 * 324.99032 * 9 7 5 13 13 O 1.45192 * 109.47070 * 65.17330 * 3 2 1 14 14 C 1.34902 * 116.99842 * 269.99439 * 13 3 2 15 15 O 1.21622 * 120.00261 * 0.02562 * 14 13 3 16 16 C 1.46475 * 120.00006 * 179.97438 * 14 13 3 17 17 C 1.36639 * 125.99373 * 180.02562 * 16 14 13 18 18 C 1.40312 * 106.70010 * 179.97438 * 17 16 14 19 19 C 1.35172 * 107.12931 * 0.02562 * 18 17 16 20 20 C 1.50695 * 125.61258 * 180.02562 * 19 18 17 21 21 O 1.42895 * 109.47274 * 89.99520 * 20 19 18 22 22 C 1.42906 * 114.00099 * 180.02562 * 21 20 19 23 23 O 1.33914 * 108.77731 * 359.77018 * 19 18 17 24 24 H 1.08991 * 109.47215 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46656 * 59.99764 * 1 2 3 26 26 H 1.08999 * 109.46901 * 300.00318 * 1 2 3 27 27 H 1.08995 * 109.46794 * 119.99913 * 2 1 3 28 28 H 1.08999 * 109.46901 * 239.99682 * 2 1 3 29 29 H 0.96998 * 120.00398 * 179.97438 * 8 7 5 30 30 H 1.07995 * 126.65362 * 0.02562 * 17 16 14 31 31 H 1.08000 * 126.43512 * 180.02562 * 18 17 16 32 32 H 1.09001 * 109.46943 * 210.00287 * 20 19 18 33 33 H 1.09004 * 109.46869 * 329.99854 * 20 19 18 34 34 H 1.08998 * 109.46867 * 180.02562 * 22 21 20 35 35 H 1.09002 * 109.46667 * 300.00052 * 22 21 20 36 36 H 1.08996 * 109.46608 * 59.99727 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6031 1.9823 -0.8400 5 6 3.5416 1.4443 -0.1281 6 1 4.1522 1.8155 0.6818 7 6 4.1360 0.9722 -1.2791 8 7 3.3954 0.6501 -2.3170 9 14 5.9932 0.7903 -1.3644 10 1 6.3888 -0.5214 -0.7917 11 1 6.4333 0.8653 -2.7807 12 1 6.6337 1.8826 -0.5885 13 8 1.6595 2.0904 1.2424 14 6 0.4705 2.7274 1.2617 15 8 -0.2288 2.7401 0.2667 16 6 0.0212 3.4028 2.4813 17 6 -1.1546 4.0811 2.6369 18 6 -1.1713 4.5621 3.9549 19 6 -0.0198 4.1624 4.5391 20 6 0.3906 4.4536 5.9596 21 8 -0.0800 3.4101 6.8148 22 6 0.2572 3.5905 8.1918 23 8 0.6938 3.4603 3.6497 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 3.8135 0.3183 -3.1270 30 1 -1.9228 4.2195 1.8904 31 1 -1.9567 5.1427 4.4159 32 1 1.4775 4.5101 6.0194 33 1 -0.0405 5.4038 6.2748 34 1 -0.1352 2.7569 8.7741 35 1 1.3413 3.6293 8.2982 36 1 -0.1770 4.5228 8.5529 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187905906.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:10 Heat of formation + Delta-G solvation = -140.408052 kcal Electronic energy + Delta-G solvation = -20302.696406 eV Core-core repulsion = 16946.352420 eV Total energy + Delta-G solvation = -3356.343986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.86085 -41.25976 -38.83941 -37.79453 -35.53845 -34.29808 -33.52286 -32.36971 -29.54587 -28.46616 -26.71503 -25.34077 -24.00460 -22.76216 -22.10056 -21.31461 -19.62928 -18.62873 -18.07585 -17.94146 -17.30363 -17.12976 -16.68099 -16.47694 -16.38870 -15.11081 -14.94563 -14.80054 -14.41060 -14.07642 -14.03128 -13.60845 -13.48520 -13.35724 -13.21496 -12.92295 -12.85562 -12.58167 -12.36123 -12.17856 -11.92834 -11.73614 -11.48022 -11.16552 -10.91605 -10.74110 -10.59362 -9.83723 -8.32515 -6.47384 -0.30098 1.08536 1.32030 1.41252 1.43058 1.53812 1.83747 2.04265 2.39965 2.97168 2.98551 3.59482 3.80106 3.85099 4.18214 4.26680 4.30953 4.32419 4.39912 4.48896 4.55678 4.61023 4.66984 4.75955 4.83070 4.91476 5.01862 5.13638 5.23249 5.28910 5.45774 5.55414 5.73087 5.82146 6.00198 6.09139 6.53745 6.80342 7.22433 8.76847 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.004495 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.564030 B = 6227.269580 C = 6893.973280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.222 3.778 4 H 0.019 0.981 5 C -0.556 4.556 6 H 0.062 0.938 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 0.980 3.020 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.267 1.267 13 O -0.358 6.358 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.084 4.084 17 C -0.103 4.103 18 C -0.185 4.185 19 C 0.010 3.990 20 C 0.138 3.862 21 O -0.416 6.416 22 C 0.025 3.975 23 O -0.167 6.167 24 H 0.067 0.933 25 H 0.042 0.958 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.272 0.728 30 H 0.180 0.820 31 H 0.204 0.796 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 8.202 18.285 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.169 3.831 4 H 0.037 0.963 5 C -0.594 4.594 6 H 0.081 0.919 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.803 3.197 10 H -0.190 1.190 11 H -0.200 1.200 12 H -0.192 1.192 13 O -0.275 6.275 14 C 0.380 3.620 15 O -0.407 6.407 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.204 4.204 19 C -0.042 4.042 20 C 0.063 3.937 21 O -0.336 6.336 22 C -0.070 4.070 23 O -0.063 6.063 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.198 0.802 31 H 0.221 0.779 32 H 0.097 0.903 33 H 0.147 0.853 34 H 0.114 0.886 35 H 0.070 0.930 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.535 7.805 17.758 20.809 hybrid contribution 0.881 -0.107 -0.641 1.095 sum -6.653 7.699 17.117 19.913 Atomic orbital electron populations 1.21739 0.95919 1.01094 1.00235 1.21798 0.94886 0.97676 1.01732 1.20558 0.95000 0.89463 0.78068 0.96349 1.21258 0.90236 1.44959 1.02911 0.91939 1.25798 1.04297 0.93945 0.93797 1.70075 1.37895 1.43210 1.03812 0.85237 0.77537 0.79228 0.77673 1.19027 1.19986 1.19183 1.86644 1.34705 1.62835 1.43294 1.19673 0.80434 0.76111 0.85829 1.90856 1.55897 1.59891 1.34028 1.20967 0.96290 1.10735 0.85383 1.22340 0.95311 0.95579 0.98986 1.22037 0.99112 1.06119 0.93114 1.23296 0.92604 0.95585 0.92730 1.21050 1.00548 0.92137 0.79985 1.87941 1.78749 1.47108 1.19812 1.23019 1.00756 1.03613 0.79623 1.84107 1.44799 1.57987 1.19452 0.91388 0.93909 0.94848 0.93169 0.90551 0.91842 0.80247 0.77914 0.90328 0.85287 0.88613 0.92978 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.99 8.57 71.98 0.62 -5.38 16 2 C -0.12 -6.36 5.53 30.60 0.17 -6.19 16 3 C 0.22 12.66 2.12 29.85 0.06 12.72 16 4 H 0.02 1.18 7.14 -2.39 -0.02 1.16 16 5 C -0.56 -32.83 8.83 25.60 0.23 -32.60 16 6 H 0.06 3.67 7.82 -2.91 -0.02 3.64 16 7 C 0.02 1.25 5.20 84.65 0.44 1.69 16 8 N -0.91 -53.28 12.01 21.45 0.26 -53.02 16 9 Si 0.98 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 13 O -0.36 -19.07 9.82 -56.79 -0.56 -19.63 16 14 C 0.53 25.19 6.39 69.97 0.45 25.64 16 15 O -0.51 -25.53 14.05 19.44 0.27 -25.26 16 16 C -0.08 -3.20 7.18 24.04 0.17 -3.03 16 17 C -0.10 -2.97 10.62 22.40 0.24 -2.74 16 18 C -0.19 -4.06 10.77 22.07 0.24 -3.83 16 19 C 0.01 0.26 6.94 24.98 0.17 0.43 16 20 C 0.14 2.34 6.46 71.23 0.46 2.81 16 21 O -0.42 -8.36 10.69 -148.98 -1.59 -9.95 16 22 C 0.03 0.28 11.01 113.37 1.25 1.53 16 23 O -0.17 -6.03 10.67 -4.90 -0.05 -6.08 16 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 25 H 0.04 2.02 7.80 -2.38 -0.02 2.00 16 26 H 0.03 1.48 6.05 -2.39 -0.01 1.46 16 27 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.08 4.20 6.65 -2.39 -0.02 4.19 16 29 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.18 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -73.01 314.61 5.93 -67.09 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: 1.08 Total: 10.03 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 4.49 Total: -8.94 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.26 Total: -53.02 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -1.93 Total: -60.92 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -73.01 5.93 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187905906.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.320 kcal (2) G-P(sol) polarization free energy of solvation -73.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds