Wall clock time and date at job start Mon Mar 30 2020 07:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.89865 * 2 1 4 4 N 1.40082 * 108.20740 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03912 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92300 * 359.75995 * 4 3 2 7 7 C 1.50703 * 126.12665 * 180.23762 * 6 4 3 8 8 C 1.35310 * 107.74567 * 0.38785 * 6 4 3 9 9 C 1.50704 * 126.03947 * 179.87345 * 8 6 4 10 10 O 1.42898 * 109.47228 * 224.71418 * 9 8 6 11 11 Si 1.63100 * 113.99820 * 96.98724 * 10 9 8 12 12 C 1.86301 * 109.47147 * 57.08987 * 11 10 9 13 13 C 1.86300 * 109.47033 * 177.08610 * 11 10 9 14 14 C 1.86293 * 109.47193 * 297.08674 * 11 10 9 15 15 C 1.50703 * 109.46925 * 104.71830 * 9 8 6 16 16 N 1.27939 * 120.00352 * 15.13916 * 15 9 8 17 17 Si 1.86805 * 119.99647 * 195.14492 * 15 9 8 18 18 H 1.48499 * 109.47200 * 94.88502 * 17 15 9 19 19 H 1.48501 * 109.46830 * 214.88308 * 17 15 9 20 20 H 1.48489 * 109.47247 * 334.88365 * 17 15 9 21 21 H 1.08991 * 109.47069 * 270.02275 * 1 2 3 22 22 H 1.09006 * 109.47004 * 30.02796 * 1 2 3 23 23 H 1.09008 * 109.47267 * 150.02239 * 1 2 3 24 24 H 1.09006 * 109.46670 * 90.02704 * 5 4 3 25 25 H 1.09003 * 109.47177 * 210.02278 * 5 4 3 26 26 H 1.08995 * 109.47407 * 330.02793 * 5 4 3 27 27 H 1.08993 * 109.47625 * 270.17479 * 7 6 4 28 28 H 1.08998 * 109.47428 * 30.17999 * 7 6 4 29 29 H 1.09008 * 109.46785 * 150.17287 * 7 6 4 30 30 H 1.08996 * 109.47140 * 344.71465 * 9 8 6 31 31 H 1.09002 * 109.47216 * 63.93907 * 12 11 10 32 32 H 1.08997 * 109.47359 * 183.94811 * 12 11 10 33 33 H 1.09006 * 109.47017 * 303.94402 * 12 11 10 34 34 H 1.08998 * 109.47384 * 60.00391 * 13 11 10 35 35 H 1.09004 * 109.47053 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47526 * 300.00253 * 13 11 10 37 37 H 1.08998 * 109.47088 * 60.00295 * 14 11 10 38 38 H 1.09004 * 109.47223 * 180.02562 * 14 11 10 39 39 H 1.08998 * 109.47222 * 299.99608 * 14 11 10 40 40 H 0.97000 * 120.00407 * 179.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6142 -0.7153 0.0063 7 6 4.8350 -1.5989 0.0140 8 6 2.3272 -1.1330 0.0006 9 6 1.8599 -2.5658 0.0012 10 8 0.8070 -2.7239 -0.9518 11 14 1.3005 -3.2978 -2.3966 12 6 2.1661 -4.9295 -2.1538 13 6 -0.1762 -3.5374 -3.5068 14 6 2.4751 -2.0820 -3.1793 15 6 1.3539 -2.9285 1.3736 16 7 1.0981 -2.0084 2.2250 17 14 1.1003 -4.7217 1.8317 18 1 2.3091 -5.2304 2.5281 19 1 -0.0759 -4.8413 2.7304 20 1 0.8659 -5.5186 0.6009 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 5.0828 1.7160 1.0279 25 1 5.6093 0.9980 -0.5134 26 1 4.5563 2.4331 -0.5138 27 1 5.1346 -1.8138 -1.0117 28 1 5.6485 -1.0901 0.5311 29 1 4.6049 -2.5320 0.5284 30 1 2.6911 -3.2191 -0.2640 31 1 1.4596 -5.6607 -1.7608 32 1 2.5572 -5.2791 -3.1092 33 1 2.9881 -4.8034 -1.4490 34 1 -0.6827 -2.5828 -3.6490 35 1 0.1537 -3.9205 -4.4726 36 1 -0.8635 -4.2487 -3.0489 37 1 3.3391 -1.9419 -2.5297 38 1 2.8046 -2.4654 -4.1451 39 1 1.9687 -1.1274 -3.3214 40 1 0.7720 -2.2418 3.1082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203417188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:40 Heat of formation + Delta-G solvation = 12.689729 kcal Electronic energy + Delta-G solvation = -20176.556495 eV Core-core repulsion = 17344.527881 eV Total energy + Delta-G solvation = -2832.028615 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.19340 -38.68293 -35.75788 -34.73306 -33.09511 -30.11804 -29.53145 -29.33646 -28.44278 -28.29155 -26.97977 -25.54061 -21.75809 -20.33187 -20.12563 -17.92316 -17.82280 -16.78410 -16.54894 -15.84530 -15.55645 -14.61047 -14.57791 -14.36687 -14.23769 -14.08388 -14.01894 -13.76299 -13.72910 -13.46344 -13.37264 -13.23810 -13.20669 -13.15170 -13.03688 -12.86211 -12.59704 -12.51049 -12.36068 -11.97896 -11.76656 -11.49130 -11.02561 -10.67171 -10.37311 -9.75511 -9.67985 -9.01150 0.70254 1.03854 1.14673 1.40439 1.46993 1.76576 1.82092 1.90063 1.92252 2.09260 2.14632 2.55935 3.60181 3.73684 3.76792 4.03869 4.10533 4.28559 4.34835 4.46646 4.54997 4.57145 4.67840 4.70488 4.73467 4.76829 4.78809 4.80336 4.84530 4.89937 5.00093 5.03483 5.20990 5.40646 5.45787 5.52073 5.53356 5.64669 5.69137 6.08377 6.29063 6.97134 7.12079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.130 3.870 3 N -0.307 5.307 4 N -0.375 5.375 5 C 0.102 3.898 6 C 0.091 3.909 7 C -0.102 4.102 8 C -0.240 4.240 9 C 0.232 3.768 10 O -0.607 6.607 11 Si 1.251 2.749 12 C -0.513 4.513 13 C -0.466 4.466 14 C -0.501 4.501 15 C -0.003 4.003 16 N -0.591 5.591 17 Si 0.913 3.087 18 H -0.240 1.240 19 H -0.241 1.241 20 H -0.223 1.223 21 H 0.076 0.924 22 H 0.060 0.940 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -3.357 -0.438 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 N -0.129 5.129 4 N -0.156 5.156 5 C -0.039 4.039 6 C -0.037 4.037 7 C -0.160 4.160 8 C -0.252 4.252 9 C 0.173 3.827 10 O -0.564 6.564 11 Si 1.388 2.612 12 C -0.615 4.615 13 C -0.572 4.572 14 C -0.603 4.603 15 C -0.254 4.254 16 N -0.206 5.206 17 Si 0.728 3.272 18 H -0.163 1.163 19 H -0.164 1.164 20 H -0.145 1.145 21 H 0.094 0.906 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 2.917 -1.689 -0.084 3.372 hybrid contribution 0.332 -1.247 0.084 1.293 sum 3.249 -2.936 0.000 4.379 Atomic orbital electron populations 1.20290 0.86798 1.03288 1.03081 1.21923 0.96690 0.89239 0.95807 1.77383 0.85881 1.22633 1.27007 1.48234 1.05728 1.03783 1.57888 1.21796 0.83908 0.95013 1.03213 1.20693 0.96352 0.84956 1.01688 1.20566 0.93465 0.98485 1.03514 1.19504 0.91076 0.95592 1.19032 1.18616 0.86831 0.91530 0.85707 1.85386 1.45376 1.85765 1.39868 0.77302 0.64317 0.63372 0.56217 1.27052 1.08940 1.20502 1.05019 1.26294 1.15296 1.05346 1.10283 1.26952 1.12451 1.13104 1.07766 1.30284 0.94573 1.04203 0.96320 1.68188 1.06142 1.39962 1.06338 0.85982 0.82373 0.75706 0.83120 1.16325 1.16409 1.14489 0.90572 0.92078 0.88780 0.90941 0.89743 0.89274 0.89906 0.90760 0.89670 0.90568 0.90712 0.90581 0.91347 0.90702 0.90620 0.90765 0.91519 0.91367 0.91177 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.23 9.98 36.01 0.36 0.13 16 2 C 0.13 0.58 6.70 -82.41 -0.55 0.03 16 3 N -0.31 -1.78 12.57 33.67 0.42 -1.36 16 4 N -0.37 -1.18 4.01 -63.88 -0.26 -1.43 16 5 C 0.10 -0.06 11.09 59.85 0.66 0.60 16 6 C 0.09 0.16 6.63 -82.26 -0.55 -0.38 16 7 C -0.10 0.20 9.46 36.01 0.34 0.54 16 8 C -0.24 -0.61 3.67 -105.05 -0.39 -1.00 16 9 C 0.23 0.13 1.66 -29.03 -0.05 0.09 16 10 O -0.61 -0.24 6.07 -35.23 -0.21 -0.45 16 11 Si 1.25 -1.63 12.74 -169.99 -2.17 -3.79 16 12 C -0.51 0.84 8.59 101.05 0.87 1.71 16 13 C -0.47 0.37 8.65 101.05 0.87 1.25 16 14 C -0.50 0.04 8.37 101.05 0.85 0.88 16 15 C 0.00 0.00 5.28 -13.90 -0.07 -0.07 16 16 N -0.59 -0.91 12.15 56.23 0.68 -0.23 16 17 Si 0.91 -0.78 29.56 -169.99 -5.02 -5.80 16 18 H -0.24 0.17 7.11 56.52 0.40 0.58 16 19 H -0.24 0.03 7.11 56.52 0.40 0.43 16 20 H -0.22 0.26 7.11 56.52 0.40 0.66 16 21 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 22 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 23 H 0.09 0.20 6.15 -51.92 -0.32 -0.12 16 24 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 25 H 0.08 -0.25 7.68 -51.93 -0.40 -0.65 16 26 H 0.09 -0.06 8.14 -51.93 -0.42 -0.48 16 27 H 0.08 -0.26 7.97 -51.93 -0.41 -0.68 16 28 H 0.07 -0.22 7.74 -51.93 -0.40 -0.62 16 29 H 0.08 -0.27 7.44 -51.92 -0.39 -0.65 16 30 H 0.08 -0.15 4.74 -51.93 -0.25 -0.40 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 32 H 0.08 -0.15 7.96 -51.93 -0.41 -0.56 16 33 H 0.07 -0.17 6.92 -51.93 -0.36 -0.53 16 34 H 0.07 -0.03 7.96 -51.93 -0.41 -0.44 16 35 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 36 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 37 H 0.07 0.00 7.25 -51.93 -0.38 -0.38 16 38 H 0.07 -0.05 7.96 -51.93 -0.41 -0.46 16 39 H 0.07 0.10 7.96 -51.93 -0.41 -0.31 16 40 H 0.34 -0.10 8.23 -40.82 -0.34 -0.44 16 LS Contribution 330.93 15.07 4.99 4.99 Total: 0.00 -6.02 330.93 -5.84 -11.86 By element: Atomic # 1 Polarization: -0.93 SS G_CDS: -6.62 Total: -7.55 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 2.35 Total: 3.77 kcal Atomic # 7 Polarization: -3.87 SS G_CDS: 0.85 Total: -3.02 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.21 Total: -0.45 kcal Atomic # 14 Polarization: -2.40 SS G_CDS: -7.19 Total: -9.60 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -6.02 -5.84 -11.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203417188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.550 kcal (2) G-P(sol) polarization free energy of solvation -6.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds