Wall clock time and date at job start Mon Mar 30 2020 07:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30829 * 125.89865 * 2 1 4 4 N 1.40082 * 108.20740 * 179.97438 * 3 2 1 5 5 C 1.46500 * 126.03912 * 179.97438 * 4 3 2 6 6 C 1.34946 * 107.92300 * 359.75995 * 4 3 2 7 7 C 1.50703 * 126.12665 * 180.23762 * 6 4 3 8 8 C 1.35310 * 107.74567 * 0.38785 * 6 4 3 9 9 C 1.50704 * 126.03947 * 179.87345 * 8 6 4 10 10 O 1.42898 * 109.47228 * 224.71418 * 9 8 6 11 11 Si 1.63100 * 113.99820 * 96.98724 * 10 9 8 12 12 C 1.86301 * 109.47147 * 57.08987 * 11 10 9 13 13 C 1.86300 * 109.47033 * 177.08610 * 11 10 9 14 14 C 1.86293 * 109.47193 * 297.08674 * 11 10 9 15 15 C 1.50703 * 109.46925 * 104.71830 * 9 8 6 16 16 N 1.27939 * 120.00352 * 15.13916 * 15 9 8 17 17 Si 1.86805 * 119.99647 * 195.14492 * 15 9 8 18 18 H 1.48499 * 109.47200 * 94.88502 * 17 15 9 19 19 H 1.48501 * 109.46830 * 214.88308 * 17 15 9 20 20 H 1.48489 * 109.47247 * 334.88365 * 17 15 9 21 21 H 1.08991 * 109.47069 * 270.02275 * 1 2 3 22 22 H 1.09006 * 109.47004 * 30.02796 * 1 2 3 23 23 H 1.09008 * 109.47267 * 150.02239 * 1 2 3 24 24 H 1.09006 * 109.46670 * 90.02704 * 5 4 3 25 25 H 1.09003 * 109.47177 * 210.02278 * 5 4 3 26 26 H 1.08995 * 109.47407 * 330.02793 * 5 4 3 27 27 H 1.08993 * 109.47625 * 270.17479 * 7 6 4 28 28 H 1.08998 * 109.47428 * 30.17999 * 7 6 4 29 29 H 1.09008 * 109.46785 * 150.17287 * 7 6 4 30 30 H 1.08996 * 109.47140 * 344.71465 * 9 8 6 31 31 H 1.09002 * 109.47216 * 63.93907 * 12 11 10 32 32 H 1.08997 * 109.47359 * 183.94811 * 12 11 10 33 33 H 1.09006 * 109.47017 * 303.94402 * 12 11 10 34 34 H 1.08998 * 109.47384 * 60.00391 * 13 11 10 35 35 H 1.09004 * 109.47053 * 179.97438 * 13 11 10 36 36 H 1.08996 * 109.47526 * 300.00253 * 13 11 10 37 37 H 1.08998 * 109.47088 * 60.00295 * 14 11 10 38 38 H 1.09004 * 109.47223 * 180.02562 * 14 11 10 39 39 H 1.08998 * 109.47222 * 299.99608 * 14 11 10 40 40 H 0.97000 * 120.00407 * 179.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6142 -0.7153 0.0063 7 6 4.8350 -1.5989 0.0140 8 6 2.3272 -1.1330 0.0006 9 6 1.8599 -2.5658 0.0012 10 8 0.8070 -2.7239 -0.9518 11 14 1.3005 -3.2978 -2.3966 12 6 2.1661 -4.9295 -2.1538 13 6 -0.1762 -3.5374 -3.5068 14 6 2.4751 -2.0820 -3.1793 15 6 1.3539 -2.9285 1.3736 16 7 1.0981 -2.0084 2.2250 17 14 1.1003 -4.7217 1.8317 18 1 2.3091 -5.2304 2.5281 19 1 -0.0759 -4.8413 2.7304 20 1 0.8659 -5.5186 0.6009 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3634 -0.8902 -0.5135 24 1 5.0828 1.7160 1.0279 25 1 5.6093 0.9980 -0.5134 26 1 4.5563 2.4331 -0.5138 27 1 5.1346 -1.8138 -1.0117 28 1 5.6485 -1.0901 0.5311 29 1 4.6049 -2.5320 0.5284 30 1 2.6911 -3.2191 -0.2640 31 1 1.4596 -5.6607 -1.7608 32 1 2.5572 -5.2791 -3.1092 33 1 2.9881 -4.8034 -1.4490 34 1 -0.6827 -2.5828 -3.6490 35 1 0.1537 -3.9205 -4.4726 36 1 -0.8635 -4.2487 -3.0489 37 1 3.3391 -1.9419 -2.5297 38 1 2.8046 -2.4654 -4.1451 39 1 1.9687 -1.1274 -3.3214 40 1 0.7720 -2.2418 3.1082 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203417188.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:40 Heat of formation + Delta-G solvation = 20.154826 kcal Electronic energy + Delta-G solvation = -20176.232785 eV Core-core repulsion = 17344.527881 eV Total energy + Delta-G solvation = -2831.704904 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31250 -38.68131 -35.76130 -34.84199 -33.10451 -30.26142 -29.43719 -29.28079 -28.32902 -28.24583 -27.01762 -25.60285 -21.81841 -20.43103 -20.19502 -17.92364 -17.83376 -16.82207 -16.58857 -15.83453 -15.53702 -14.67326 -14.54956 -14.29225 -14.14069 -14.06326 -13.95858 -13.72793 -13.68669 -13.40665 -13.27282 -13.26211 -13.15005 -13.09150 -12.96507 -12.82290 -12.67040 -12.58960 -12.27293 -11.94858 -11.74479 -11.47220 -11.12724 -10.60274 -10.30791 -9.88226 -9.72955 -9.11347 0.74110 0.99546 1.15597 1.50663 1.54122 1.73837 1.85071 1.99141 2.00972 2.02927 2.21516 2.63750 3.61846 3.74477 3.81547 4.09513 4.17789 4.38836 4.42178 4.50686 4.61314 4.63213 4.70196 4.80978 4.82867 4.84376 4.87111 4.90547 4.91946 4.95279 5.00673 5.02219 5.06833 5.19009 5.39518 5.50473 5.62711 5.71648 5.74048 5.89931 6.26355 6.93320 7.02798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.112 3.888 3 N -0.355 5.355 4 N -0.384 5.384 5 C 0.095 3.905 6 C 0.090 3.910 7 C -0.105 4.105 8 C -0.251 4.251 9 C 0.223 3.777 10 O -0.619 6.619 11 Si 1.280 2.720 12 C -0.515 4.515 13 C -0.478 4.478 14 C -0.508 4.508 15 C -0.006 4.006 16 N -0.620 5.620 17 Si 0.943 3.057 18 H -0.237 1.237 19 H -0.257 1.257 20 H -0.213 1.213 21 H 0.071 0.929 22 H 0.055 0.945 23 H 0.100 0.900 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.350 -5.142 -0.578 6.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 N -0.179 5.179 4 N -0.166 5.166 5 C -0.046 4.046 6 C -0.038 4.038 7 C -0.163 4.163 8 C -0.262 4.262 9 C 0.165 3.835 10 O -0.576 6.576 11 Si 1.415 2.585 12 C -0.618 4.618 13 C -0.584 4.584 14 C -0.608 4.608 15 C -0.255 4.255 16 N -0.236 5.236 17 Si 0.757 3.243 18 H -0.160 1.160 19 H -0.181 1.181 20 H -0.134 1.134 21 H 0.089 0.911 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.097 0.903 25 H 0.130 0.870 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.266 -3.446 -0.243 5.490 hybrid contribution -0.080 -0.634 0.111 0.649 sum 4.186 -4.080 -0.132 5.847 Atomic orbital electron populations 1.20260 0.86750 1.03328 1.02725 1.22171 0.97105 0.90021 0.96017 1.77270 0.87593 1.24055 1.28940 1.48526 1.05488 1.04842 1.57710 1.22052 0.83567 0.94940 1.04027 1.21335 0.97565 0.84822 1.00115 1.20774 0.92116 0.98454 1.04994 1.19764 0.91162 0.96130 1.19159 1.18884 0.87692 0.90994 0.85974 1.85369 1.45802 1.86014 1.40415 0.76819 0.63368 0.63231 0.55062 1.27004 1.09393 1.19520 1.05860 1.26436 1.15888 1.04982 1.11045 1.27091 1.12870 1.12513 1.08376 1.30635 0.93623 1.05201 0.96055 1.68220 1.07245 1.41043 1.07052 0.85573 0.81665 0.74066 0.82979 1.16004 1.18092 1.13424 0.91067 0.92564 0.88146 0.90262 0.86983 0.89765 0.88251 0.89497 0.88089 0.87747 0.90562 0.89961 0.89969 0.91586 0.90030 0.90599 0.91386 0.90817 0.93329 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.59 9.98 71.24 0.71 0.12 16 2 C 0.11 1.20 6.70 43.10 0.29 1.49 16 3 N -0.36 -4.84 12.57 -47.39 -0.60 -5.43 16 4 N -0.38 -2.68 4.01 -356.03 -1.43 -4.11 16 5 C 0.09 -0.10 11.09 127.77 1.42 1.32 16 6 C 0.09 0.30 6.63 41.41 0.27 0.58 16 7 C -0.11 0.61 9.46 71.24 0.67 1.29 16 8 C -0.25 -1.37 3.67 -20.14 -0.07 -1.45 16 9 C 0.22 0.15 1.66 29.10 0.05 0.19 16 10 O -0.62 -0.44 6.07 -148.98 -0.90 -1.34 16 11 Si 1.28 -3.98 12.74 68.60 0.87 -3.10 16 12 C -0.51 2.77 8.59 113.37 0.97 3.74 16 13 C -0.48 0.67 8.65 113.37 0.98 1.65 16 14 C -0.51 0.02 8.37 113.37 0.95 0.97 16 15 C -0.01 0.00 5.28 88.68 0.47 0.46 16 16 N -0.62 -2.38 12.15 24.11 0.29 -2.09 16 17 Si 0.94 -2.64 29.56 68.60 2.03 -0.62 16 18 H -0.24 0.76 7.11 99.48 0.71 1.47 16 19 H -0.26 0.08 7.11 99.48 0.71 0.79 16 20 H -0.21 0.95 7.11 99.48 0.71 1.65 16 21 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 22 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 23 H 0.10 0.61 6.15 -2.38 -0.01 0.59 16 24 H 0.08 -0.21 8.14 -2.38 -0.02 -0.23 16 25 H 0.11 -0.80 7.68 -2.39 -0.02 -0.82 16 26 H 0.08 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.10 -0.87 7.97 -2.39 -0.02 -0.89 16 28 H 0.09 -0.70 7.74 -2.39 -0.02 -0.72 16 29 H 0.10 -0.89 7.44 -2.38 -0.02 -0.91 16 30 H 0.11 -0.61 4.74 -2.39 -0.01 -0.62 16 31 H 0.08 -0.38 7.96 -2.39 -0.02 -0.40 16 32 H 0.08 -0.50 7.96 -2.39 -0.02 -0.52 16 33 H 0.08 -0.65 6.92 -2.38 -0.02 -0.67 16 34 H 0.06 0.02 7.96 -2.39 -0.02 0.00 16 35 H 0.08 -0.23 7.96 -2.38 -0.02 -0.25 16 36 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 37 H 0.07 -0.04 7.25 -2.39 -0.02 -0.05 16 38 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 39 H 0.05 0.21 7.96 -2.39 -0.02 0.19 16 40 H 0.34 0.15 8.23 -92.71 -0.76 -0.61 16 Total: 0.00 -15.62 330.93 7.99 -7.63 By element: Atomic # 1 Polarization: -2.31 SS G_CDS: 1.01 Total: -1.30 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 6.71 Total: 10.36 kcal Atomic # 7 Polarization: -9.90 SS G_CDS: -1.73 Total: -11.63 kcal Atomic # 8 Polarization: -0.44 SS G_CDS: -0.90 Total: -1.34 kcal Atomic # 14 Polarization: -6.62 SS G_CDS: 2.90 Total: -3.72 kcal Total: -15.62 7.99 -7.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203417188.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.783 kcal (2) G-P(sol) polarization free energy of solvation -15.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds