Wall clock time and date at job start Mon Mar 30 2020 07:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47256 * 180.02562 * 9 7 2 11 11 O 1.42097 * 109.47307 * 63.60465 * 10 9 7 12 12 C 1.81401 * 103.00097 * 179.97438 * 10 9 7 13 13 C 1.53003 * 109.47182 * 59.99342 * 12 10 9 14 14 C 1.52994 * 109.47067 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47419 * 59.99894 * 14 13 12 16 16 C 1.52994 * 109.47214 * 300.00261 * 15 14 13 17 17 C 1.52997 * 109.47152 * 299.99613 * 16 15 14 18 18 C 1.52998 * 109.47052 * 60.00327 * 17 16 15 19 19 C 1.52999 * 109.47193 * 299.99744 * 18 17 16 20 20 C 1.52994 * 109.47451 * 59.99916 * 18 17 16 21 21 C 1.53003 * 109.47310 * 59.99942 * 16 15 14 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.08998 * 109.47009 * 300.00472 * 13 12 10 26 26 H 1.08997 * 109.46756 * 60.00376 * 13 12 10 27 27 H 1.09003 * 109.47105 * 180.02562 * 14 13 12 28 28 H 1.09005 * 109.47201 * 180.02562 * 15 14 13 29 29 H 1.09006 * 109.46757 * 60.00105 * 15 14 13 30 30 H 1.09007 * 109.46965 * 179.97438 * 16 15 14 31 31 H 1.08995 * 109.47251 * 300.00127 * 17 16 15 32 32 H 1.09003 * 109.46887 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.47064 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47676 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46770 * 300.00606 * 19 18 17 36 36 H 1.08997 * 109.47348 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.47105 * 59.99742 * 20 18 17 38 38 H 1.08998 * 109.47383 * 180.02562 * 21 16 15 39 39 H 1.09001 * 109.46817 * 59.99775 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4298 -3.8780 -0.0014 11 8 3.1894 -3.8515 1.1992 12 6 1.3515 -5.3367 -0.0021 13 6 0.4688 -5.3178 -1.2517 14 6 -0.4411 -6.5478 -1.2519 15 6 -1.3247 -6.5289 -0.0030 16 6 -0.4420 -6.5478 1.2465 17 6 0.4144 -7.8156 1.2469 18 6 1.2980 -7.8345 -0.0019 19 6 0.4154 -7.8157 -1.2515 20 6 2.2079 -6.6045 -0.0017 21 6 0.4679 -5.3177 1.2469 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 -0.1416 -4.4148 -1.2517 26 1 1.0983 -5.3310 -2.1414 27 1 -1.0697 -6.5346 -2.1423 28 1 -1.9726 -7.4055 -0.0029 29 1 -1.9348 -5.6256 -0.0032 30 1 -1.0715 -6.5338 2.1363 31 1 -0.2338 -8.6919 1.2467 32 1 1.0429 -7.8292 2.1374 33 1 1.9079 -8.7380 -0.0019 34 1 1.0448 -7.8288 -2.1413 35 1 -0.2328 -8.6921 -1.2516 36 1 2.8377 -6.6183 -0.8912 37 1 2.8367 -6.6179 0.8886 38 1 1.0971 -5.3313 2.1368 39 1 -0.1423 -4.4144 1.2466 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216967385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:23 Heat of formation + Delta-G solvation = -75.317669 kcal Electronic energy + Delta-G solvation = -19696.641425 eV Core-core repulsion = 16921.705935 eV Total energy + Delta-G solvation = -2774.935490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.98139 -34.59113 -33.15909 -32.45013 -32.39660 -32.37566 -28.59356 -25.73843 -25.70621 -23.16575 -21.37304 -21.26403 -21.15128 -17.52212 -16.59515 -16.36537 -15.01175 -14.65244 -14.31792 -14.28512 -14.22901 -13.68254 -13.52451 -13.14056 -13.06642 -12.79419 -12.50395 -12.29376 -12.19512 -12.05050 -11.26002 -10.97923 -10.82773 -10.72902 -10.69494 -10.66899 -10.65220 -10.50158 -10.40980 -10.03235 -9.60170 -9.47875 -9.40852 -8.53909 -8.46765 -7.08069 -6.15438 -4.21353 2.57590 3.28893 3.32530 3.37198 3.82732 4.36473 4.61826 4.66474 4.83025 4.86745 5.21484 5.27548 5.33935 5.35031 5.37590 5.41384 5.57171 5.58180 5.59135 5.72436 5.88359 5.93270 5.96514 6.06767 6.13143 6.13715 6.21158 6.23325 6.30895 6.36123 6.40787 6.53176 6.66816 6.68216 6.72013 7.09959 7.17894 7.71191 8.05238 8.82451 9.42974 10.96265 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.005900 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.896776 B = 4744.717143 C = 5034.347154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.069 3.931 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.062 0.938 9 C -0.247 4.247 10 S 1.192 4.808 11 O -0.866 6.866 12 C -0.373 4.373 13 C -0.082 4.082 14 C -0.082 4.082 15 C -0.106 4.106 16 C -0.081 4.081 17 C -0.105 4.105 18 C -0.080 4.080 19 C -0.104 4.104 20 C -0.080 4.080 21 C -0.100 4.100 22 H 0.264 0.736 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.162 -15.254 -5.252 16.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.080 0.920 9 C -0.388 4.388 10 S 1.396 4.604 11 O -0.862 6.862 12 C -0.469 4.469 13 C -0.121 4.121 14 C -0.101 4.101 15 C -0.143 4.143 16 C -0.101 4.101 17 C -0.143 4.143 18 C -0.100 4.100 19 C -0.142 4.142 20 C -0.118 4.118 21 C -0.138 4.138 22 H 0.074 0.926 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.286 -15.137 -5.221 16.015 hybrid contribution -1.128 0.942 1.988 2.472 sum -1.413 -14.195 -3.234 14.627 Atomic orbital electron populations 1.69960 1.06158 1.27136 1.49209 1.24958 0.94907 0.99300 0.94396 0.86549 0.79609 0.82293 0.79064 1.19619 1.21062 1.20023 1.20443 0.92711 0.89223 1.53037 0.91983 1.24873 1.05797 1.05265 1.02845 1.69584 0.90661 0.86979 1.13200 1.92998 1.57274 1.84519 1.51361 1.27258 1.07123 1.13200 0.99275 1.21247 0.97147 0.98214 0.95463 1.21012 0.96390 0.95183 0.97513 1.21508 0.97082 1.01245 0.94506 1.20990 0.96355 0.95124 0.97608 1.21502 0.97952 0.97161 0.97671 1.20994 0.96359 0.97592 0.95038 1.21513 0.97929 0.97249 0.97471 1.21155 0.96412 0.92312 1.01921 1.21564 0.97585 0.98206 0.96477 0.92649 0.94120 0.90988 0.90725 0.90864 0.91371 0.92665 0.91931 0.92010 0.92577 0.92493 0.91719 0.91919 0.92658 0.91275 0.92035 0.92179 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.51 -14.34 9.13 -34.44 -0.31 -14.65 16 8 H 0.06 1.70 7.71 -52.49 -0.40 1.30 16 9 C -0.25 -6.04 4.79 36.01 0.17 -5.87 16 10 S 1.19 23.55 12.01 -107.50 -1.29 22.26 16 11 O -0.87 -22.12 18.09 -35.23 -0.64 -22.76 16 12 C -0.37 -5.93 0.68 -90.62 -0.06 -5.99 16 13 C -0.08 -1.13 4.32 -26.73 -0.12 -1.25 16 14 C -0.08 -0.98 3.19 -90.62 -0.29 -1.27 16 15 C -0.11 -1.36 5.19 -26.73 -0.14 -1.50 16 16 C -0.08 -1.15 3.19 -90.62 -0.29 -1.44 16 17 C -0.11 -1.33 5.19 -26.73 -0.14 -1.47 16 18 C -0.08 -0.97 3.19 -90.62 -0.29 -1.26 16 19 C -0.10 -1.13 5.19 -26.73 -0.14 -1.27 16 20 C -0.08 -1.11 4.48 -26.74 -0.12 -1.23 16 21 C -0.10 -1.74 4.28 -26.73 -0.11 -1.86 16 22 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 23 H 0.04 1.10 6.99 -51.92 -0.36 0.74 16 24 H 0.07 1.69 7.00 -51.92 -0.36 1.33 16 25 H 0.07 1.13 6.68 -51.93 -0.35 0.78 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.32 6.68 -51.93 -0.35 0.97 16 LS Contribution 301.77 15.07 4.55 4.55 Total: -1.00 -33.43 301.77 -10.06 -43.48 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -6.46 Total: -1.61 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: -1.94 Total: -37.22 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.64 Total: -22.76 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 23.55 SS G_CDS: -1.29 Total: 22.26 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -33.43 -10.06 -43.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.836 kcal (2) G-P(sol) polarization free energy of solvation -33.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds