Wall clock time and date at job start Mon Mar 30 2020 07:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48494 * 109.47288 * 240.00094 * 3 2 1 5 5 H 1.48503 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46819 * 119.99748 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 S 1.81400 * 109.47256 * 180.02562 * 9 7 2 11 11 O 1.42097 * 109.47307 * 63.60465 * 10 9 7 12 12 C 1.81401 * 103.00097 * 179.97438 * 10 9 7 13 13 C 1.53003 * 109.47182 * 59.99342 * 12 10 9 14 14 C 1.52994 * 109.47067 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47419 * 59.99894 * 14 13 12 16 16 C 1.52994 * 109.47214 * 300.00261 * 15 14 13 17 17 C 1.52997 * 109.47152 * 299.99613 * 16 15 14 18 18 C 1.52998 * 109.47052 * 60.00327 * 17 16 15 19 19 C 1.52999 * 109.47193 * 299.99744 * 18 17 16 20 20 C 1.52994 * 109.47451 * 59.99916 * 18 17 16 21 21 C 1.53003 * 109.47310 * 59.99942 * 16 15 14 22 22 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 24 24 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 25 25 H 1.08998 * 109.47009 * 300.00472 * 13 12 10 26 26 H 1.08997 * 109.46756 * 60.00376 * 13 12 10 27 27 H 1.09003 * 109.47105 * 180.02562 * 14 13 12 28 28 H 1.09005 * 109.47201 * 180.02562 * 15 14 13 29 29 H 1.09006 * 109.46757 * 60.00105 * 15 14 13 30 30 H 1.09007 * 109.46965 * 179.97438 * 16 15 14 31 31 H 1.08995 * 109.47251 * 300.00127 * 17 16 15 32 32 H 1.09003 * 109.46887 * 180.02562 * 17 16 15 33 33 H 1.09006 * 109.47064 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.47676 * 179.97438 * 19 18 17 35 35 H 1.09006 * 109.46770 * 300.00606 * 19 18 17 36 36 H 1.08997 * 109.47348 * 179.97438 * 20 18 17 37 37 H 1.09003 * 109.47105 * 59.99742 * 20 18 17 38 38 H 1.08998 * 109.47383 * 180.02562 * 21 16 15 39 39 H 1.09001 * 109.46817 * 59.99775 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4298 -3.8780 -0.0014 11 8 3.1894 -3.8515 1.1992 12 6 1.3515 -5.3367 -0.0021 13 6 0.4688 -5.3178 -1.2517 14 6 -0.4411 -6.5478 -1.2519 15 6 -1.3247 -6.5289 -0.0030 16 6 -0.4420 -6.5478 1.2465 17 6 0.4144 -7.8156 1.2469 18 6 1.2980 -7.8345 -0.0019 19 6 0.4154 -7.8157 -1.2515 20 6 2.2079 -6.6045 -0.0017 21 6 0.4679 -5.3177 1.2469 22 1 -0.4849 0.8401 0.0004 23 1 0.6240 -2.5575 0.8880 24 1 0.6246 -2.5563 -0.8919 25 1 -0.1416 -4.4148 -1.2517 26 1 1.0983 -5.3310 -2.1414 27 1 -1.0697 -6.5346 -2.1423 28 1 -1.9726 -7.4055 -0.0029 29 1 -1.9348 -5.6256 -0.0032 30 1 -1.0715 -6.5338 2.1363 31 1 -0.2338 -8.6919 1.2467 32 1 1.0429 -7.8292 2.1374 33 1 1.9079 -8.7380 -0.0019 34 1 1.0448 -7.8288 -2.1413 35 1 -0.2328 -8.6921 -1.2516 36 1 2.8377 -6.6183 -0.8912 37 1 2.8367 -6.6179 0.8886 38 1 1.0971 -5.3313 2.1368 39 1 -0.1423 -4.4144 1.2466 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967385.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:22 Heat of formation + Delta-G solvation = -96.818249 kcal Electronic energy + Delta-G solvation = -19697.573760 eV Core-core repulsion = 16921.705935 eV Total energy + Delta-G solvation = -2775.867825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.124 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.09241 -36.51472 -35.27102 -33.64535 -33.54399 -33.42728 -30.66361 -26.89230 -26.80740 -25.20513 -22.62678 -22.35532 -22.22290 -18.92616 -18.36070 -18.11269 -16.77067 -16.27297 -15.48226 -15.41982 -15.37848 -15.32407 -15.02204 -14.49954 -14.25180 -14.13658 -14.08489 -14.00197 -13.30755 -13.29892 -13.14529 -12.89899 -12.60294 -12.30335 -11.92538 -11.83744 -11.77811 -11.71514 -11.67529 -11.60136 -11.47798 -10.68978 -10.55954 -10.52138 -10.12418 -8.84481 -8.31240 -6.45193 0.93602 1.36707 1.40360 1.48396 2.09891 2.35200 2.99544 3.14099 3.53431 3.56886 3.78551 4.13440 4.17799 4.25623 4.29677 4.33629 4.43358 4.49283 4.50413 4.67549 4.77263 4.86786 4.89452 4.91479 4.96720 5.06574 5.09984 5.13321 5.18222 5.20187 5.23837 5.26955 5.31110 5.52858 5.54467 5.61085 5.63889 5.65230 5.93859 6.68055 7.23405 8.80885 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.033329 B = 0.005900 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.896776 B = 4744.717143 C = 5034.347154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.014 3.986 3 Si 0.962 3.038 4 H -0.249 1.249 5 H -0.276 1.276 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.060 0.940 9 C -0.253 4.253 10 S 1.245 4.755 11 O -0.928 6.928 12 C -0.356 4.356 13 C -0.088 4.088 14 C -0.079 4.079 15 C -0.106 4.106 16 C -0.081 4.081 17 C -0.105 4.105 18 C -0.077 4.077 19 C -0.099 4.099 20 C -0.084 4.084 21 C -0.103 4.103 22 H 0.267 0.733 23 H -0.002 1.002 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.106 0.894 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.025 0.975 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.036 -17.640 -7.635 19.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.786 3.214 4 H -0.173 1.173 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.392 4.392 10 S 1.451 4.549 11 O -0.924 6.924 12 C -0.455 4.455 13 C -0.126 4.126 14 C -0.099 4.099 15 C -0.144 4.144 16 C -0.101 4.101 17 C -0.143 4.143 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.141 4.141 22 H 0.076 0.924 23 H 0.016 0.984 24 H 0.094 0.906 25 H 0.070 0.930 26 H 0.124 0.876 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.118 0.882 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.139 -17.472 -7.608 19.057 hybrid contribution -1.241 1.576 2.790 3.436 sum -1.380 -15.896 -4.818 16.668 Atomic orbital electron populations 1.70075 1.07674 1.28192 1.49977 1.25900 0.95840 1.03139 0.93808 0.85543 0.78533 0.77811 0.79554 1.17284 1.20103 1.20520 1.20899 0.93016 0.91052 1.53087 0.92174 1.24904 1.06233 1.07175 1.00873 1.68586 0.89197 0.86217 1.10872 1.92879 1.60179 1.85777 1.53584 1.27060 1.06720 1.11574 1.00161 1.21391 0.97414 0.98837 0.94956 1.21062 0.96264 0.94773 0.97772 1.21537 0.97122 1.01593 0.94116 1.21007 0.96185 0.94190 0.98671 1.21534 0.98068 0.96806 0.97879 1.21044 0.96247 0.96980 0.95385 1.21532 0.97936 0.96882 0.97269 1.21295 0.96675 0.91988 1.02334 1.21531 0.97698 0.98963 0.95917 0.92394 0.98393 0.90586 0.92952 0.87552 0.88995 0.90039 0.93766 0.92486 0.89900 0.93887 0.89128 0.89679 0.90400 0.88172 0.94444 0.95565 0.94636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.01 0.80 5.46 84.65 0.46 1.27 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 4 H -0.25 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 6 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 7 C -0.54 -31.41 9.13 25.60 0.23 -31.18 16 8 H 0.06 3.41 7.71 -2.91 -0.02 3.39 16 9 C -0.25 -13.13 4.79 71.24 0.34 -12.79 16 10 S 1.24 51.10 12.01 -56.49 -0.68 50.42 16 11 O -0.93 -49.89 18.09 -148.98 -2.70 -52.59 16 12 C -0.36 -11.29 0.68 -10.79 -0.01 -11.30 16 13 C -0.09 -2.24 4.32 30.59 0.13 -2.11 16 14 C -0.08 -1.61 3.19 -10.79 -0.03 -1.64 16 15 C -0.11 -2.50 5.19 30.59 0.16 -2.34 16 16 C -0.08 -2.26 3.19 -10.80 -0.03 -2.29 16 17 C -0.11 -2.41 5.19 30.59 0.16 -2.25 16 18 C -0.08 -1.54 3.19 -10.80 -0.03 -1.57 16 19 C -0.10 -1.57 5.19 30.60 0.16 -1.41 16 20 C -0.08 -2.18 4.48 30.59 0.14 -2.05 16 21 C -0.10 -3.78 4.28 30.60 0.13 -3.65 16 22 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 23 H 0.00 -0.15 6.99 -2.39 -0.02 -0.17 16 24 H 0.08 3.78 7.00 -2.39 -0.02 3.76 16 25 H 0.05 1.59 6.68 -2.39 -0.02 1.57 16 26 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 29 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.03 1.50 6.68 -2.39 -0.02 1.48 16 Total: -1.00 -77.28 301.77 1.75 -75.53 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.01 Total: 8.60 kcal Atomic # 6 Polarization: -75.12 SS G_CDS: 1.80 Total: -73.31 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 8 Polarization: -49.89 SS G_CDS: -2.70 Total: -52.59 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 51.10 SS G_CDS: -0.68 Total: 50.42 kcal Total: -77.28 1.75 -75.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967385.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.287 kcal (2) G-P(sol) polarization free energy of solvation -77.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds