Wall clock time and date at job start Mon Mar 30 2020 07:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00244 * 2 1 4 4 H 1.48497 * 109.47063 * 270.00011 * 3 2 1 5 5 H 1.48499 * 109.46959 * 29.99579 * 3 2 1 6 6 H 1.48502 * 109.47105 * 149.99566 * 3 2 1 7 7 C 1.37875 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00170 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00086 * 180.27748 * 7 2 1 10 10 C 1.53006 * 109.47320 * 179.72616 * 9 7 2 11 11 H 1.08999 * 109.47058 * 304.99950 * 10 9 7 12 12 Cl 1.80297 * 109.46956 * 64.99803 * 10 9 7 13 13 C 1.52994 * 109.46947 * 185.00131 * 10 9 7 14 14 C 1.53004 * 109.47002 * 184.72733 * 13 10 9 15 15 C 1.52998 * 109.47018 * 300.00056 * 14 13 10 16 16 C 1.53000 * 109.47123 * 299.99769 * 15 14 13 17 17 C 1.52999 * 109.46997 * 300.00324 * 16 15 14 18 18 C 1.52998 * 109.47448 * 59.99876 * 17 16 15 19 19 C 1.52999 * 109.47160 * 179.97438 * 14 13 10 20 20 C 1.53004 * 109.47018 * 59.99817 * 18 17 16 21 21 C 1.52999 * 109.47160 * 300.00360 * 20 18 17 22 22 C 1.52998 * 109.47448 * 59.99904 * 21 20 18 23 23 H 0.97002 * 120.00264 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47116 * 299.72342 * 9 7 2 25 25 H 1.08997 * 109.47123 * 59.72333 * 9 7 2 26 26 H 1.09002 * 109.47045 * 304.72405 * 13 10 9 27 27 H 1.09006 * 109.46919 * 59.99933 * 14 13 10 28 28 H 1.08997 * 109.47167 * 60.00157 * 15 14 13 29 29 H 1.08998 * 109.46792 * 179.97438 * 15 14 13 30 30 H 1.08996 * 109.46750 * 180.02562 * 16 15 14 31 31 H 1.09007 * 109.46910 * 299.99843 * 17 16 15 32 32 H 1.09006 * 109.47011 * 180.02562 * 17 16 15 33 33 H 1.08997 * 109.47167 * 179.97438 * 18 17 16 34 34 H 1.08996 * 109.47052 * 300.00289 * 19 14 13 35 35 H 1.08998 * 109.47104 * 180.02562 * 19 14 13 36 36 H 1.08996 * 109.47299 * 179.97438 * 20 18 17 37 37 H 1.09006 * 109.46919 * 60.00123 * 20 18 17 38 38 H 1.08998 * 109.47104 * 179.97438 * 21 20 18 39 39 H 1.08999 * 109.46971 * 59.99546 * 22 21 20 40 40 H 1.08997 * 109.47167 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0069 10 6 4.0214 -2.6367 0.0130 11 1 3.5833 -3.1734 0.8545 12 17 3.5508 -3.4471 -1.5273 13 6 5.5456 -2.6382 0.1452 14 6 6.0659 -4.0727 0.0331 15 6 5.4564 -4.9248 1.1482 16 6 5.8511 -4.3439 2.5075 17 6 7.3754 -4.3454 2.6396 18 6 7.9848 -3.4934 1.5245 19 6 7.5902 -4.0741 0.1646 20 6 7.4646 -2.0588 1.6366 21 6 5.9403 -2.0573 1.5045 22 6 5.3309 -2.9094 2.6196 23 1 -0.4850 0.8400 -0.0004 24 1 3.8786 -0.6829 -0.8830 25 1 3.8711 -0.6778 0.8969 26 1 5.9798 -2.0312 -0.6493 27 1 5.7847 -4.4865 -0.9354 28 1 4.3705 -4.9237 1.0540 29 1 5.8267 -5.9468 1.0680 30 1 5.4173 -4.9512 3.3018 31 1 7.7460 -5.3675 2.5597 32 1 7.6565 -3.9320 3.6082 33 1 9.0707 -3.4941 1.6189 34 1 8.0240 -3.4672 -0.6300 35 1 7.9608 -5.0960 0.0843 36 1 7.8991 -1.4517 0.8425 37 1 7.7458 -1.6450 2.6050 38 1 5.5697 -1.0355 1.5848 39 1 5.6121 -2.4956 3.5880 40 1 4.2450 -2.9087 2.5252 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967788.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:56 Heat of formation + Delta-G solvation = -69.718926 kcal Electronic energy + Delta-G solvation = -19927.166906 eV Core-core repulsion = 17150.430489 eV Total energy + Delta-G solvation = -2776.736417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.44582 -37.19976 -35.48668 -34.37073 -33.49024 -33.43805 -31.69194 -27.97240 -26.69023 -25.24897 -23.19649 -22.27443 -22.12694 -20.89521 -19.06780 -18.03341 -16.65169 -16.29426 -15.98430 -15.34205 -15.31407 -15.00382 -14.68312 -14.30367 -14.15687 -14.12875 -13.65411 -13.39116 -13.31509 -13.13622 -12.99142 -12.58657 -12.25045 -12.02123 -11.79267 -11.72326 -11.66390 -11.63371 -11.58087 -11.45208 -11.02269 -10.90506 -10.75018 -10.43824 -10.35292 -10.26844 -8.25537 -6.28035 1.35029 1.35536 1.46249 1.65301 2.36230 3.10140 3.54251 3.65244 3.68239 4.06819 4.13280 4.26204 4.32640 4.38046 4.39795 4.46529 4.49897 4.52058 4.59655 4.67435 4.74752 4.89315 4.89970 4.96338 5.01251 5.17389 5.19012 5.22717 5.23300 5.25643 5.27624 5.29329 5.35573 5.40130 5.60589 5.61438 5.69233 5.71308 5.72637 6.28964 6.78133 7.34145 8.91349 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024739 B = 0.007016 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.546654 B = 3990.160087 C = 4429.691905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.007 3.993 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.514 4.514 8 H 0.036 0.964 9 C -0.014 4.014 10 C 0.037 3.963 11 H 0.086 0.914 12 Cl -0.212 7.212 13 C -0.074 4.074 14 C -0.082 4.082 15 C -0.110 4.110 16 C -0.083 4.083 17 C -0.100 4.100 18 C -0.083 4.083 19 C -0.102 4.102 20 C -0.102 4.102 21 C -0.083 4.083 22 C -0.114 4.114 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.923 -7.549 5.239 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.553 4.553 8 H 0.055 0.945 9 C -0.051 4.051 10 C -0.007 4.007 11 H 0.104 0.896 12 Cl -0.186 7.186 13 C -0.093 4.093 14 C -0.100 4.100 15 C -0.147 4.147 16 C -0.102 4.102 17 C -0.138 4.138 18 C -0.101 4.101 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.152 4.152 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 19.746 -7.507 5.130 21.739 hybrid contribution -0.920 0.862 -0.416 1.328 sum 18.826 -6.645 4.713 20.514 Atomic orbital electron populations 1.70065 1.08222 1.27843 1.53081 1.25894 0.95493 1.03072 0.94520 0.85809 0.79871 0.78952 0.78967 1.19801 1.21102 1.16441 1.21307 0.91300 0.93203 1.49450 0.94533 1.19879 0.94914 0.92869 0.97473 1.24204 0.96303 0.95258 0.84891 0.89578 1.98644 1.94076 1.82971 1.42913 1.21413 0.91425 0.98079 0.98376 1.21102 0.96402 0.93615 0.98919 1.21550 0.99461 0.99051 0.94633 1.21040 0.96934 0.95319 0.96870 1.21503 0.93535 1.00245 0.98481 1.21075 1.00009 0.94266 0.94744 1.21523 0.93661 1.01459 0.97314 1.21521 0.93066 0.97188 1.02193 1.21108 0.97072 0.98581 0.93363 1.21608 0.99233 0.95898 0.98435 0.92714 0.96238 0.93827 0.91253 0.91614 0.93940 0.90873 0.90962 0.91018 0.91235 0.89606 0.91995 0.90822 0.91858 0.90865 0.92227 0.90964 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.28 13.96 21.45 0.30 -59.98 16 2 C 0.01 0.39 5.47 84.65 0.46 0.85 16 3 Si 0.94 44.28 27.47 68.60 1.88 46.16 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.24 -10.28 6.54 99.48 0.65 -9.63 16 7 C -0.51 -29.43 9.17 25.60 0.23 -29.19 16 8 H 0.04 2.33 7.93 -2.91 -0.02 2.31 16 9 C -0.01 -0.65 3.45 29.85 0.10 -0.55 16 10 C 0.04 1.42 1.61 30.59 0.05 1.46 16 11 H 0.09 3.47 4.82 -2.39 -0.01 3.46 16 12 Cl -0.21 -8.63 26.52 -2.72 -0.07 -8.70 16 13 C -0.07 -2.23 1.58 -10.79 -0.02 -2.25 16 14 C -0.08 -2.09 2.44 -10.79 -0.03 -2.11 16 15 C -0.11 -2.70 4.92 30.59 0.15 -2.54 16 16 C -0.08 -1.82 3.20 -10.79 -0.03 -1.86 16 17 C -0.10 -1.71 5.19 30.59 0.16 -1.55 16 18 C -0.08 -1.44 3.20 -10.78 -0.03 -1.48 16 19 C -0.10 -2.00 5.20 30.61 0.16 -1.84 16 20 C -0.10 -2.08 5.19 30.60 0.16 -1.93 16 21 C -0.08 -2.22 2.48 -10.79 -0.03 -2.24 16 22 C -0.11 -2.98 4.92 30.59 0.15 -2.83 16 23 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.02 0.90 7.58 -2.39 -0.02 0.88 16 25 H 0.04 1.93 5.38 -2.39 -0.01 1.92 16 26 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.07 1.84 6.88 -2.38 -0.02 1.82 16 28 H 0.04 1.25 6.54 -2.39 -0.02 1.23 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.06 1.81 6.45 -2.39 -0.02 1.79 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.37 6.33 -2.39 -0.02 1.36 16 Total: -1.00 -64.44 296.48 4.55 -59.89 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.95 Total: 10.67 kcal Atomic # 6 Polarization: -49.54 SS G_CDS: 1.49 Total: -48.05 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.30 Total: -59.98 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Atomic # 17 Polarization: -8.63 SS G_CDS: -0.07 Total: -8.70 kcal Total: -64.44 4.55 -59.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967788.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.831 kcal (2) G-P(sol) polarization free energy of solvation -64.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds