Wall clock time and date at job start Mon Mar 30 2020 07:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47025 * 239.99642 * 3 2 1 5 5 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47072 * 119.99630 * 3 2 1 7 7 C 1.37875 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47163 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47150 * 55.00126 * 10 9 7 12 12 Cl 1.80303 * 109.47062 * 295.00045 * 10 9 7 13 13 C 1.52997 * 109.47318 * 175.00339 * 10 9 7 14 14 C 1.53006 * 109.47019 * 295.27306 * 13 10 9 15 15 C 1.53002 * 109.47356 * 179.97438 * 14 13 10 16 16 C 1.53005 * 109.46403 * 60.00120 * 15 14 13 17 17 C 1.52995 * 109.47351 * 60.00441 * 16 15 14 18 18 C 1.53001 * 109.46677 * 299.99374 * 17 16 15 19 19 C 1.52996 * 109.46947 * 300.00109 * 14 13 10 20 20 C 1.53006 * 109.47370 * 300.00157 * 18 17 16 21 21 C 1.52996 * 109.46947 * 59.99889 * 20 18 17 22 22 C 1.52997 * 109.47181 * 299.99375 * 16 15 14 23 23 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47268 * 60.00311 * 9 7 2 25 25 H 1.08992 * 109.47095 * 299.99697 * 9 7 2 26 26 H 1.09004 * 109.47394 * 55.26626 * 13 10 9 27 27 H 1.09006 * 109.47001 * 59.99561 * 14 13 10 28 28 H 1.08994 * 109.46960 * 300.00142 * 15 14 13 29 29 H 1.09002 * 109.47069 * 179.97438 * 15 14 13 30 30 H 1.09010 * 109.46379 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47243 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47546 * 59.99304 * 17 16 15 33 33 H 1.09007 * 109.46967 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47139 * 179.97438 * 19 14 13 35 35 H 1.08997 * 109.47474 * 59.99676 * 19 14 13 36 36 H 1.08997 * 109.46600 * 299.99991 * 20 18 17 37 37 H 1.08997 * 109.47298 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.47139 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47636 * 300.00401 * 22 16 15 40 40 H 1.09000 * 109.47010 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8423 12 17 3.1820 -3.6519 -1.5401 13 6 1.4847 -4.9835 0.1262 14 6 0.7846 -5.0418 1.4855 15 6 0.0233 -6.3630 1.6109 16 6 1.0052 -7.5304 1.4924 17 6 2.0482 -7.4349 2.6077 18 6 2.8094 -6.1137 2.4822 19 6 1.8276 -4.9456 2.6007 20 6 3.5094 -6.0554 1.1229 21 6 2.4664 -6.1510 0.0077 22 6 1.7051 -7.4722 0.1332 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 0.7415 -5.0520 -0.6683 27 1 0.0849 -4.2102 1.5697 28 1 -0.7197 -6.4310 0.8164 29 1 -0.4750 -6.4046 2.5795 30 1 0.4629 -8.4717 1.5823 31 1 2.7474 -8.2669 2.5236 32 1 1.5495 -7.4764 3.5760 33 1 3.5528 -6.0458 3.2766 34 1 1.3289 -4.9867 3.5691 35 1 2.3696 -4.0042 2.5112 36 1 4.2088 -6.8871 1.0386 37 1 4.0521 -5.1143 1.0337 38 1 2.9651 -6.1100 -0.9607 39 1 0.9620 -7.5403 -0.6614 40 1 2.4042 -8.3042 0.0486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216967805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:00 Heat of formation + Delta-G solvation = -59.702903 kcal Electronic energy + Delta-G solvation = -19859.993802 eV Core-core repulsion = 17083.691713 eV Total energy + Delta-G solvation = -2776.302089 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.129 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.31246 -35.53203 -33.75245 -32.60013 -32.40974 -32.32378 -29.58656 -26.22773 -25.63870 -23.78136 -21.84964 -21.21220 -20.98114 -19.51406 -17.19550 -16.20904 -15.04971 -14.88005 -14.52822 -14.24389 -14.04835 -13.61998 -13.15364 -13.08141 -12.88826 -12.40689 -12.24644 -12.14583 -12.02957 -11.38994 -11.15497 -10.98038 -10.72769 -10.68379 -10.60700 -10.59103 -10.50514 -10.21381 -9.93948 -9.67332 -9.46890 -9.34506 -9.29136 -8.91557 -8.80242 -8.33893 -5.99199 -3.99977 3.33752 3.35853 3.39730 3.43396 4.47605 4.69819 4.73021 4.74594 5.28704 5.31053 5.37792 5.38527 5.45087 5.46260 5.52015 5.56990 5.61863 5.64422 5.83777 5.84458 5.93696 5.99660 6.10695 6.17738 6.20331 6.24834 6.25365 6.28008 6.32315 6.44245 6.49597 6.57809 6.71637 6.76787 6.85614 6.87112 7.54110 7.66667 7.97412 8.37000 9.03820 9.63263 11.12211 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.006288 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.927629 B = 4452.146904 C = 4781.216451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.059 3.941 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.058 0.942 9 C 0.018 3.982 10 C 0.023 3.977 11 H 0.088 0.912 12 Cl -0.212 7.212 13 C -0.078 4.078 14 C -0.080 4.080 15 C -0.106 4.106 16 C -0.085 4.085 17 C -0.104 4.104 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.108 4.108 21 C -0.085 4.085 22 C -0.105 4.105 23 H 0.260 0.740 24 H 0.026 0.974 25 H 0.036 0.964 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -15.168 4.306 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.142 4.142 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.076 0.924 9 C -0.019 4.019 10 C -0.020 4.020 11 H 0.106 0.894 12 Cl -0.186 7.186 13 C -0.097 4.097 14 C -0.099 4.099 15 C -0.143 4.143 16 C -0.104 4.104 17 C -0.142 4.142 18 C -0.104 4.104 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.103 4.103 22 C -0.143 4.143 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.078 0.922 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.633 -15.044 4.191 15.837 hybrid contribution 0.461 1.014 -0.116 1.120 sum 3.093 -14.030 4.075 14.934 Atomic orbital electron populations 1.69939 1.05989 1.26691 1.51029 1.24947 0.94775 0.99104 0.95358 0.86686 0.79612 0.83248 0.78666 1.20204 1.21401 1.20304 1.21125 0.93105 0.90527 1.50328 0.92378 1.19477 0.93388 0.90630 0.98360 1.24519 0.95757 0.96978 0.84707 0.89371 1.98636 1.77992 1.98919 1.43031 1.21424 0.97128 0.93555 0.97587 1.21096 0.97046 0.97676 0.94038 1.21529 0.97159 0.94358 1.01263 1.21043 0.96136 0.97962 0.95231 1.21508 0.97539 0.97120 0.98027 1.21054 0.97016 0.95001 0.97303 1.21605 0.96934 0.98357 0.98044 1.21547 0.97211 1.01674 0.94145 1.21148 0.95858 0.94134 0.99158 1.21521 0.98941 0.97210 0.96619 0.92996 0.95553 0.94615 0.90835 0.89918 0.92132 0.92259 0.91971 0.92564 0.92440 0.91807 0.92363 0.91031 0.92642 0.91522 0.90494 0.92249 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.06 8.61 -34.44 -0.30 -14.36 16 8 H 0.06 1.59 7.68 -52.49 -0.40 1.18 16 9 C 0.02 0.45 4.38 -27.88 -0.12 0.32 16 10 C 0.02 0.46 1.61 -26.73 -0.04 0.42 16 11 H 0.09 1.74 4.83 -51.93 -0.25 1.49 16 12 Cl -0.21 -4.27 26.52 -51.86 -1.38 -5.64 16 13 C -0.08 -1.28 1.58 -90.62 -0.14 -1.42 16 14 C -0.08 -1.22 2.48 -90.62 -0.22 -1.44 16 15 C -0.11 -1.35 5.19 -26.73 -0.14 -1.49 16 16 C -0.09 -0.98 3.19 -90.62 -0.29 -1.27 16 17 C -0.10 -1.16 5.19 -26.73 -0.14 -1.30 16 18 C -0.09 -1.07 3.20 -90.59 -0.29 -1.36 16 19 C -0.11 -1.60 4.92 -26.71 -0.13 -1.74 16 20 C -0.11 -1.45 4.92 -26.73 -0.13 -1.59 16 21 C -0.08 -1.20 2.44 -90.62 -0.22 -1.42 16 22 C -0.11 -1.28 5.19 -26.73 -0.14 -1.42 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.91 6.33 -51.93 -0.33 0.58 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.43 6.45 -51.93 -0.34 1.10 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.15 6.33 -51.93 -0.33 0.82 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.99 6.54 -51.93 -0.34 0.65 16 38 H 0.08 1.16 6.88 -51.93 -0.36 0.80 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 300.10 15.07 4.52 4.52 Total: -1.00 -28.28 300.10 -10.10 -38.38 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.55 Total: -1.78 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -2.41 Total: -26.50 kcal Atomic # 7 Polarization: -26.45 SS G_CDS: 0.74 Total: -25.72 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 17 Polarization: -4.27 SS G_CDS: -1.38 Total: -5.64 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.28 -10.10 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.327 kcal (2) G-P(sol) polarization free energy of solvation -28.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds