Wall clock time and date at job start Mon Mar 30 2020 07:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47025 * 239.99642 * 3 2 1 5 5 H 1.48499 * 109.46861 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47072 * 119.99630 * 3 2 1 7 7 C 1.37875 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47163 * 179.97438 * 9 7 2 11 11 H 1.08993 * 109.47150 * 55.00126 * 10 9 7 12 12 Cl 1.80303 * 109.47062 * 295.00045 * 10 9 7 13 13 C 1.52997 * 109.47318 * 175.00339 * 10 9 7 14 14 C 1.53006 * 109.47019 * 295.27306 * 13 10 9 15 15 C 1.53002 * 109.47356 * 179.97438 * 14 13 10 16 16 C 1.53005 * 109.46403 * 60.00120 * 15 14 13 17 17 C 1.52995 * 109.47351 * 60.00441 * 16 15 14 18 18 C 1.53001 * 109.46677 * 299.99374 * 17 16 15 19 19 C 1.52996 * 109.46947 * 300.00109 * 14 13 10 20 20 C 1.53006 * 109.47370 * 300.00157 * 18 17 16 21 21 C 1.52996 * 109.46947 * 59.99889 * 20 18 17 22 22 C 1.52997 * 109.47181 * 299.99375 * 16 15 14 23 23 H 0.96995 * 119.99990 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47268 * 60.00311 * 9 7 2 25 25 H 1.08992 * 109.47095 * 299.99697 * 9 7 2 26 26 H 1.09004 * 109.47394 * 55.26626 * 13 10 9 27 27 H 1.09006 * 109.47001 * 59.99561 * 14 13 10 28 28 H 1.08994 * 109.46960 * 300.00142 * 15 14 13 29 29 H 1.09002 * 109.47069 * 179.97438 * 15 14 13 30 30 H 1.09010 * 109.46379 * 179.97438 * 16 15 14 31 31 H 1.09000 * 109.47243 * 179.97438 * 17 16 15 32 32 H 1.08992 * 109.47546 * 59.99304 * 17 16 15 33 33 H 1.09007 * 109.46967 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47139 * 179.97438 * 19 14 13 35 35 H 1.08997 * 109.47474 * 59.99676 * 19 14 13 36 36 H 1.08997 * 109.46600 * 299.99991 * 20 18 17 37 37 H 1.08997 * 109.47298 * 180.02562 * 20 18 17 38 38 H 1.09002 * 109.47139 * 180.02562 * 21 20 18 39 39 H 1.08998 * 109.47636 * 300.00401 * 22 16 15 40 40 H 1.09000 * 109.47010 * 180.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8423 12 17 3.1820 -3.6519 -1.5401 13 6 1.4847 -4.9835 0.1262 14 6 0.7846 -5.0418 1.4855 15 6 0.0233 -6.3630 1.6109 16 6 1.0052 -7.5304 1.4924 17 6 2.0482 -7.4349 2.6077 18 6 2.8094 -6.1137 2.4822 19 6 1.8276 -4.9456 2.6007 20 6 3.5094 -6.0554 1.1229 21 6 2.4664 -6.1510 0.0077 22 6 1.7051 -7.4722 0.1332 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6242 -2.5567 0.8902 26 1 0.7415 -5.0520 -0.6683 27 1 0.0849 -4.2102 1.5697 28 1 -0.7197 -6.4310 0.8164 29 1 -0.4750 -6.4046 2.5795 30 1 0.4629 -8.4717 1.5823 31 1 2.7474 -8.2669 2.5236 32 1 1.5495 -7.4764 3.5760 33 1 3.5528 -6.0458 3.2766 34 1 1.3289 -4.9867 3.5691 35 1 2.3696 -4.0042 2.5112 36 1 4.2088 -6.8871 1.0386 37 1 4.0521 -5.1143 1.0337 38 1 2.9651 -6.1100 -0.9607 39 1 0.9620 -7.5403 -0.6614 40 1 2.4042 -8.3042 0.0486 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216967805.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:00 Heat of formation + Delta-G solvation = -72.361643 kcal Electronic energy + Delta-G solvation = -19860.542726 eV Core-core repulsion = 17083.691713 eV Total energy + Delta-G solvation = -2776.851013 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.43302 -37.15045 -35.49185 -34.33662 -33.48003 -33.43325 -31.28560 -27.78959 -26.69124 -25.39729 -23.37123 -22.26696 -22.16271 -20.88497 -18.72343 -17.94953 -16.63521 -16.40335 -15.98309 -15.40807 -15.24308 -14.88618 -14.44160 -14.30705 -14.13267 -14.01393 -13.61492 -13.33594 -13.29424 -12.98871 -12.90799 -12.65977 -12.35833 -12.15317 -11.82340 -11.73092 -11.68243 -11.64982 -11.58182 -11.37135 -10.99490 -10.83143 -10.57529 -10.42629 -10.33249 -10.23653 -8.18314 -6.26191 1.38820 1.41314 1.48689 1.67972 2.41370 3.16376 3.57292 3.66704 3.68773 4.10112 4.18279 4.26822 4.35214 4.39438 4.40433 4.47279 4.51675 4.52435 4.61221 4.73624 4.79564 4.90330 4.92230 4.97635 5.09227 5.20501 5.22229 5.23067 5.24268 5.29232 5.30857 5.35618 5.43601 5.55824 5.62169 5.68584 5.71473 5.73383 5.79351 6.21637 6.85689 7.40949 8.93176 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.027663 B = 0.006288 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.927629 B = 4452.146904 C = 4781.216451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.953 3.047 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.028 3.972 10 C 0.035 3.965 11 H 0.089 0.911 12 Cl -0.213 7.213 13 C -0.072 4.072 14 C -0.080 4.080 15 C -0.103 4.103 16 C -0.082 4.082 17 C -0.100 4.100 18 C -0.082 4.082 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.081 4.081 22 C -0.103 4.103 23 H 0.262 0.738 24 H -0.006 1.006 25 H 0.020 0.980 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.814 -17.015 5.270 18.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.779 3.221 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.008 4.008 11 H 0.107 0.893 12 Cl -0.187 7.187 13 C -0.091 4.091 14 C -0.099 4.099 15 C -0.140 4.140 16 C -0.100 4.100 17 C -0.137 4.137 18 C -0.100 4.100 19 C -0.149 4.149 20 C -0.145 4.145 21 C -0.100 4.100 22 C -0.140 4.140 23 H 0.071 0.929 24 H 0.012 0.988 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.740 -16.900 5.156 18.061 hybrid contribution 0.094 1.634 -0.444 1.696 sum 3.834 -15.266 4.712 16.431 Atomic orbital electron populations 1.70063 1.07495 1.27599 1.52009 1.25789 0.95612 1.02743 0.95043 0.85674 0.78453 0.78993 0.79018 1.19823 1.20857 1.19117 1.21484 0.93242 0.91883 1.49847 0.92495 1.19268 0.93663 0.91940 0.95988 1.24340 0.94813 0.97117 0.84540 0.89268 1.98629 1.77937 1.98949 1.43193 1.21358 0.97069 0.92823 0.97873 1.21052 0.96899 0.98281 0.93689 1.21519 0.97296 0.93360 1.01852 1.21065 0.95976 0.98027 0.94955 1.21504 0.97543 0.96390 0.98311 1.21056 0.96835 0.95059 0.97095 1.21588 0.96991 0.98235 0.98076 1.21548 0.97171 1.01480 0.94325 1.21102 0.95558 0.94193 0.99098 1.21522 0.99138 0.96202 0.97168 0.92903 0.98809 0.96178 0.92541 0.93307 0.92494 0.91040 0.89612 0.90630 0.91284 0.90506 0.91254 0.93742 0.90506 0.93587 0.91563 0.92443 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 2 C 0.01 0.34 5.46 84.65 0.46 0.80 16 3 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 4 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -29.71 8.61 25.60 0.22 -29.49 16 8 H 0.06 3.16 7.68 -2.91 -0.02 3.14 16 9 C 0.03 1.46 4.38 29.85 0.13 1.59 16 10 C 0.03 1.43 1.61 30.59 0.05 1.48 16 11 H 0.09 3.64 4.83 -2.39 -0.01 3.63 16 12 Cl -0.21 -8.73 26.52 -2.72 -0.07 -8.80 16 13 C -0.07 -2.43 1.58 -10.79 -0.02 -2.44 16 14 C -0.08 -2.48 2.48 -10.79 -0.03 -2.51 16 15 C -0.10 -2.47 5.19 30.60 0.16 -2.32 16 16 C -0.08 -1.61 3.19 -10.79 -0.03 -1.64 16 17 C -0.10 -1.82 5.19 30.59 0.16 -1.66 16 18 C -0.08 -1.86 3.20 -10.78 -0.03 -1.90 16 19 C -0.11 -3.14 4.92 30.61 0.15 -2.99 16 20 C -0.11 -2.69 4.92 30.60 0.15 -2.54 16 21 C -0.08 -2.20 2.44 -10.79 -0.03 -2.23 16 22 C -0.10 -2.21 5.19 30.59 0.16 -2.06 16 23 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 24 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 25 H 0.02 1.09 6.33 -2.39 -0.02 1.08 16 26 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.05 1.81 6.45 -2.38 -0.02 1.79 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.04 1.47 6.33 -2.39 -0.02 1.45 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.33 6.54 -2.39 -0.02 1.31 16 38 H 0.07 1.94 6.88 -2.39 -0.02 1.92 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -61.85 300.10 4.75 -57.10 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.01 Total: 8.71 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 1.50 Total: -47.90 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.28 Total: -56.15 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 17 Polarization: -8.73 SS G_CDS: -0.07 Total: -8.80 kcal Total: -61.85 4.75 -57.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216967805.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.261 kcal (2) G-P(sol) polarization free energy of solvation -61.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds