Wall clock time and date at job start Mon Mar 30 2020 07:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33387 * 125.20430 * 2 1 4 4 C 1.38417 * 114.92177 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92239 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20141 * 179.97438 * 5 4 3 7 7 H 1.08991 * 109.47537 * 22.07565 * 6 5 4 8 8 C 1.53000 * 109.47310 * 262.07123 * 6 5 4 9 9 N 1.46896 * 109.47265 * 185.10970 * 8 6 5 10 10 N 1.46903 * 109.46818 * 142.07713 * 6 5 4 11 11 C 1.46900 * 111.00421 * 74.32385 * 10 6 5 12 12 C 1.46903 * 110.99929 * 310.36559 * 10 6 5 13 13 H 1.09001 * 109.46706 * 57.03109 * 12 10 6 14 14 C 1.53003 * 109.47366 * 297.03136 * 12 10 6 15 15 C 1.50698 * 109.47460 * 177.02792 * 12 10 6 16 16 H 1.08009 * 119.99440 * 3.42749 * 15 12 10 17 17 C 1.37869 * 120.00128 * 183.42916 * 15 12 10 18 18 N 1.31509 * 120.00241 * 6.56858 * 17 15 12 19 19 Si 1.86799 * 119.99912 * 186.57152 * 17 15 12 20 20 H 1.48502 * 109.47325 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47403 * 299.99983 * 19 17 15 22 22 H 1.48509 * 109.47242 * 59.99782 * 19 17 15 23 23 S 1.75885 * 109.59362 * 0.24421 * 5 4 3 24 24 H 1.09001 * 109.47462 * 89.99917 * 1 2 3 25 25 H 1.09004 * 109.46824 * 209.99373 * 1 2 3 26 26 H 1.09001 * 109.47354 * 329.99035 * 1 2 3 27 27 H 1.07997 * 122.53577 * 0.07051 * 3 2 1 28 28 H 1.08008 * 122.53988 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.47228 * 305.10929 * 8 6 5 30 30 H 1.08999 * 109.47069 * 65.11326 * 8 6 5 31 31 H 1.00902 * 111.00095 * 184.90555 * 9 8 6 32 32 H 1.00904 * 111.00562 * 308.86130 * 9 8 6 33 33 H 1.09007 * 109.46522 * 298.25947 * 11 10 6 34 34 H 1.09001 * 109.46906 * 58.25238 * 11 10 6 35 35 H 1.09000 * 109.47100 * 178.26114 * 11 10 6 36 36 H 1.09001 * 109.46639 * 305.27115 * 14 12 10 37 37 H 1.09001 * 109.47004 * 65.27003 * 14 12 10 38 38 H 1.08999 * 109.46806 * 185.27038 * 14 12 10 39 39 H 0.96996 * 120.00165 * 355.42398 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9750 -0.4478 -0.0016 6 6 5.3860 -0.9771 -0.0029 7 1 6.0610 -0.2133 0.3833 8 6 5.7927 -1.3417 -1.4321 9 7 7.1202 -1.9704 -1.4182 10 7 5.4613 -2.1725 0.8476 11 6 4.8413 -3.3287 0.1868 12 6 4.8485 -1.9247 2.1595 13 1 3.8153 -1.6050 2.0232 14 6 5.6293 -0.8293 2.8885 15 6 4.8789 -3.1912 2.9756 16 1 5.3597 -4.0751 2.5829 17 6 4.2932 -3.2216 4.2233 18 7 3.5972 -2.1899 4.6483 19 14 4.4882 -4.7283 5.3101 20 1 3.7692 -4.5110 6.5912 21 1 3.9214 -5.9141 4.6188 22 1 5.9296 -4.9574 5.5848 23 16 2.5209 -1.4372 -0.0089 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.8669 2.0894 0.0011 28 1 4.3721 1.6350 -0.0010 29 1 5.0655 -2.0376 -1.8505 30 1 5.8246 -0.4390 -2.0422 31 1 7.4460 -2.1480 -2.3565 32 1 7.7821 -1.4065 -0.9063 33 1 3.7856 -3.1229 0.0098 34 1 5.3399 -3.5139 -0.7646 35 1 4.9383 -4.2070 0.8250 36 1 6.6818 -1.1077 2.9419 37 1 5.5291 0.1107 2.3459 38 1 5.2332 -0.7107 3.8970 39 1 3.5510 -1.3823 4.1130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226903948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:11 Heat of formation + Delta-G solvation = 44.264961 kcal Electronic energy + Delta-G solvation = -19493.718985 eV Core-core repulsion = 16756.261738 eV Total energy + Delta-G solvation = -2737.457247 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.73964 -36.93269 -34.46880 -32.49840 -31.56050 -29.02938 -28.40970 -25.22857 -24.54906 -24.27534 -22.55850 -21.13213 -19.66475 -18.43235 -16.74790 -16.35762 -15.73665 -15.15105 -14.82336 -14.19173 -13.89427 -13.65972 -13.48292 -13.15961 -12.97775 -12.83565 -12.40096 -12.05324 -11.85465 -11.71970 -11.33930 -11.07784 -11.05543 -10.83878 -10.74697 -10.43799 -10.25817 -10.03434 -9.93144 -9.84029 -8.46158 -8.33870 -8.30446 -8.05085 -7.84669 -7.12872 -6.23450 -3.94656 1.42057 2.07136 2.49701 3.12436 3.48281 3.51180 3.68920 4.56076 4.66074 4.99009 5.16520 5.25005 5.43284 5.47390 5.47886 5.55196 5.64930 5.79547 5.82371 5.89426 6.08759 6.19651 6.29675 6.39957 6.55487 6.65973 6.67231 6.82211 6.85966 6.93502 7.02944 7.23326 7.33496 7.56873 7.67058 7.92815 8.12776 8.48319 8.68673 8.97711 9.75246 11.12252 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.008431 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.917738 B = 3320.360933 C = 4303.332189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.216 4.216 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.191 4.191 6 C 0.148 3.852 7 H 0.088 0.912 8 C 0.072 3.928 9 N -0.830 5.830 10 N -0.500 5.500 11 C 0.038 3.962 12 C 0.188 3.812 13 H 0.013 0.987 14 C -0.137 4.137 15 C -0.583 4.583 16 H 0.056 0.944 17 C 0.019 3.981 18 N -0.915 5.915 19 Si 1.066 2.934 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.288 1.288 23 S 0.148 5.852 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.332 0.668 32 H 0.343 0.657 33 H 0.008 0.992 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.013 0.987 38 H 0.060 0.940 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 4.634 -12.429 13.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.333 4.333 3 C -0.175 4.175 4 C -0.173 4.173 5 C -0.311 4.311 6 C 0.036 3.964 7 H 0.106 0.894 8 C -0.059 4.059 9 N -0.360 5.360 10 N -0.223 5.223 11 C -0.111 4.111 12 C 0.081 3.919 13 H 0.030 0.970 14 C -0.195 4.195 15 C -0.622 4.622 16 H 0.075 0.925 17 C -0.185 4.185 18 N -0.552 5.552 19 Si 0.895 3.105 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.215 1.215 23 S 0.414 5.586 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.144 0.856 28 H 0.147 0.853 29 H 0.090 0.910 30 H 0.041 0.959 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.265 1.712 -10.501 10.715 hybrid contribution 0.206 3.468 -1.921 3.969 sum -1.059 5.180 -12.422 13.500 Atomic orbital electron populations 1.20243 0.88714 1.02795 1.01834 1.25020 1.00168 0.98580 1.09513 1.19865 0.92960 0.98592 1.06127 1.19909 0.95952 0.95689 1.05794 1.25545 0.99940 0.97007 1.08599 1.20531 0.88141 0.94488 0.93250 0.89392 1.21884 0.92211 0.96602 0.95223 1.58484 1.03786 1.54041 1.19654 1.62231 1.56019 1.01043 1.02958 1.22509 0.93626 0.95740 0.99258 1.19652 0.92074 0.95569 0.84592 0.97008 1.21889 1.00473 0.96268 1.00896 1.21933 1.40023 0.97001 1.03208 0.92549 1.25672 0.93141 1.03097 0.96557 1.70778 1.36982 1.05129 1.42296 0.83586 0.76179 0.74588 0.76150 1.21020 1.21623 1.21502 1.84785 0.95236 1.07156 1.71467 0.91439 0.91541 0.91245 0.85567 0.85339 0.91044 0.95895 0.85625 0.84455 0.97478 0.91664 0.90147 0.93860 0.96840 0.92134 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.38 36.01 0.37 -0.65 16 2 C -0.22 -3.58 6.51 -36.00 -0.23 -3.81 16 3 C -0.15 -2.34 10.05 -41.21 -0.41 -2.75 16 4 C -0.14 -2.40 10.04 -41.21 -0.41 -2.81 16 5 C -0.19 -3.46 4.03 -36.00 -0.15 -3.60 16 6 C 0.15 2.64 2.03 -68.86 -0.14 2.50 16 7 H 0.09 1.58 7.05 -51.93 -0.37 1.22 16 8 C 0.07 1.06 5.48 -3.83 -0.02 1.04 16 9 N -0.83 -11.12 8.73 -10.37 -0.09 -11.21 16 10 N -0.50 -10.59 4.46 -229.68 -1.02 -11.61 16 11 C 0.04 0.77 8.18 60.06 0.49 1.26 16 12 C 0.19 4.67 1.24 -68.86 -0.09 4.58 16 13 H 0.01 0.33 4.77 -51.93 -0.25 0.08 16 14 C -0.14 -3.33 8.54 37.16 0.32 -3.01 16 15 C -0.58 -16.18 7.77 -34.44 -0.27 -16.45 16 16 H 0.06 1.59 6.34 -52.48 -0.33 1.25 16 17 C 0.02 0.55 5.20 -17.82 -0.09 0.46 16 18 N -0.91 -27.50 13.02 55.43 0.72 -26.78 16 19 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 S 0.15 2.74 17.86 -107.50 -1.92 0.82 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 28 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 29 H 0.07 1.09 6.64 -51.93 -0.34 0.75 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.33 3.53 9.08 -39.29 -0.36 3.18 16 32 H 0.34 4.43 8.93 -39.29 -0.35 4.08 16 33 H 0.01 0.16 4.31 -30.00 -0.13 0.03 16 34 H 0.06 1.19 5.73 -51.93 -0.30 0.89 16 35 H 0.08 1.80 6.05 -51.93 -0.31 1.48 16 36 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.01 0.28 6.93 -51.93 -0.36 -0.08 16 38 H 0.06 1.60 5.95 -51.93 -0.31 1.29 16 39 H 0.27 8.19 5.75 -40.82 -0.23 7.95 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -30.57 309.08 -8.77 -39.34 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.40 Total: 7.64 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: -0.63 Total: -23.26 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.39 Total: -49.61 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.92 Total: 0.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.57 -8.77 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226903948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.608 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds