Wall clock time and date at job start Mon Mar 30 2020 07:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33387 * 125.20430 * 2 1 4 4 C 1.38417 * 114.92177 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.92239 * 0.02562 * 4 3 2 6 6 C 1.50699 * 125.20141 * 179.97438 * 5 4 3 7 7 H 1.08991 * 109.47537 * 22.07565 * 6 5 4 8 8 C 1.53000 * 109.47310 * 262.07123 * 6 5 4 9 9 N 1.46896 * 109.47265 * 185.10970 * 8 6 5 10 10 N 1.46903 * 109.46818 * 142.07713 * 6 5 4 11 11 C 1.46900 * 111.00421 * 74.32385 * 10 6 5 12 12 C 1.46903 * 110.99929 * 310.36559 * 10 6 5 13 13 H 1.09001 * 109.46706 * 57.03109 * 12 10 6 14 14 C 1.53003 * 109.47366 * 297.03136 * 12 10 6 15 15 C 1.50698 * 109.47460 * 177.02792 * 12 10 6 16 16 H 1.08009 * 119.99440 * 3.42749 * 15 12 10 17 17 C 1.37869 * 120.00128 * 183.42916 * 15 12 10 18 18 N 1.31509 * 120.00241 * 6.56858 * 17 15 12 19 19 Si 1.86799 * 119.99912 * 186.57152 * 17 15 12 20 20 H 1.48502 * 109.47325 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47403 * 299.99983 * 19 17 15 22 22 H 1.48509 * 109.47242 * 59.99782 * 19 17 15 23 23 S 1.75885 * 109.59362 * 0.24421 * 5 4 3 24 24 H 1.09001 * 109.47462 * 89.99917 * 1 2 3 25 25 H 1.09004 * 109.46824 * 209.99373 * 1 2 3 26 26 H 1.09001 * 109.47354 * 329.99035 * 1 2 3 27 27 H 1.07997 * 122.53577 * 0.07051 * 3 2 1 28 28 H 1.08008 * 122.53988 * 179.97438 * 4 3 2 29 29 H 1.09003 * 109.47228 * 305.10929 * 8 6 5 30 30 H 1.08999 * 109.47069 * 65.11326 * 8 6 5 31 31 H 1.00902 * 111.00095 * 184.90555 * 9 8 6 32 32 H 1.00904 * 111.00562 * 308.86130 * 9 8 6 33 33 H 1.09007 * 109.46522 * 298.25947 * 11 10 6 34 34 H 1.09001 * 109.46906 * 58.25238 * 11 10 6 35 35 H 1.09000 * 109.47100 * 178.26114 * 11 10 6 36 36 H 1.09001 * 109.46639 * 305.27115 * 14 12 10 37 37 H 1.09001 * 109.47004 * 65.27003 * 14 12 10 38 38 H 1.08999 * 109.46806 * 185.27038 * 14 12 10 39 39 H 0.96996 * 120.00165 * 355.42398 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6379 0.8428 -0.0006 5 6 3.9750 -0.4478 -0.0016 6 6 5.3860 -0.9771 -0.0029 7 1 6.0610 -0.2133 0.3833 8 6 5.7927 -1.3417 -1.4321 9 7 7.1202 -1.9704 -1.4182 10 7 5.4613 -2.1725 0.8476 11 6 4.8413 -3.3287 0.1868 12 6 4.8485 -1.9247 2.1595 13 1 3.8153 -1.6050 2.0232 14 6 5.6293 -0.8293 2.8885 15 6 4.8789 -3.1912 2.9756 16 1 5.3597 -4.0751 2.5829 17 6 4.2932 -3.2216 4.2233 18 7 3.5972 -2.1899 4.6483 19 14 4.4882 -4.7283 5.3101 20 1 3.7692 -4.5110 6.5912 21 1 3.9214 -5.9141 4.6188 22 1 5.9296 -4.9574 5.5848 23 16 2.5209 -1.4372 -0.0089 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5140 27 1 1.8669 2.0894 0.0011 28 1 4.3721 1.6350 -0.0010 29 1 5.0655 -2.0376 -1.8505 30 1 5.8246 -0.4390 -2.0422 31 1 7.4460 -2.1480 -2.3565 32 1 7.7821 -1.4065 -0.9063 33 1 3.7856 -3.1229 0.0098 34 1 5.3399 -3.5139 -0.7646 35 1 4.9383 -4.2070 0.8250 36 1 6.6818 -1.1077 2.9419 37 1 5.5291 0.1107 2.3459 38 1 5.2332 -0.7107 3.8970 39 1 3.5510 -1.3823 4.1130 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226903948.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:11 Heat of formation + Delta-G solvation = 23.134932 kcal Electronic energy + Delta-G solvation = -19494.635252 eV Core-core repulsion = 16756.261738 eV Total energy + Delta-G solvation = -2738.373514 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23172 -38.31139 -36.12618 -34.11949 -32.87514 -30.90779 -29.77701 -26.91743 -26.16246 -25.90138 -23.84694 -22.83639 -21.19539 -19.87066 -18.63397 -17.87122 -17.09263 -16.57164 -16.21331 -15.70767 -15.44764 -15.35164 -14.81110 -14.53500 -14.40664 -14.21227 -13.89870 -13.46737 -13.27643 -13.20314 -12.95247 -12.77558 -12.63174 -12.55264 -12.39727 -12.18199 -12.08603 -11.92933 -11.55449 -11.26547 -10.46630 -10.39958 -9.45822 -9.41340 -9.24221 -8.81689 -8.47682 -6.18853 0.10669 0.72718 1.16754 1.54226 1.61900 1.80404 1.84432 2.60410 3.25432 3.30336 3.62395 3.99304 4.00931 4.15137 4.29541 4.39458 4.53098 4.58322 4.63503 4.67594 4.68976 4.71694 4.83755 4.84521 4.98221 5.00239 5.04085 5.20019 5.27250 5.34676 5.37370 5.62394 5.67986 5.98367 6.15525 6.29248 6.54998 6.62642 6.74729 6.85565 7.58331 8.87799 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.008431 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.917738 B = 3320.360933 C = 4303.332189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.214 4.214 3 C -0.152 4.152 4 C -0.142 4.142 5 C -0.205 4.205 6 C 0.149 3.851 7 H 0.088 0.912 8 C 0.083 3.917 9 N -0.840 5.840 10 N -0.505 5.505 11 C 0.043 3.957 12 C 0.192 3.808 13 H -0.004 1.004 14 C -0.124 4.124 15 C -0.589 4.589 16 H 0.047 0.953 17 C -0.028 4.028 18 N -0.939 5.939 19 Si 1.108 2.892 20 H -0.287 1.287 21 H -0.275 1.275 22 H -0.275 1.275 23 S 0.089 5.911 24 H 0.090 0.910 25 H 0.059 0.941 26 H 0.086 0.914 27 H 0.156 0.844 28 H 0.150 0.850 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.349 0.651 32 H 0.346 0.654 33 H 0.009 0.991 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.466 5.439 -13.600 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.331 4.331 3 C -0.181 4.181 4 C -0.172 4.172 5 C -0.325 4.325 6 C 0.037 3.963 7 H 0.105 0.895 8 C -0.048 4.048 9 N -0.371 5.371 10 N -0.227 5.227 11 C -0.106 4.106 12 C 0.084 3.916 13 H 0.014 0.986 14 C -0.182 4.182 15 C -0.628 4.628 16 H 0.065 0.935 17 C -0.226 4.226 18 N -0.577 5.577 19 Si 0.931 3.069 20 H -0.213 1.213 21 H -0.200 1.200 22 H -0.200 1.200 23 S 0.353 5.647 24 H 0.109 0.891 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.173 0.827 28 H 0.168 0.832 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.027 0.973 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.068 2.518 -11.713 12.028 hybrid contribution 0.133 3.294 -1.640 3.682 sum -0.935 5.812 -13.353 14.593 Atomic orbital electron populations 1.20362 0.86477 1.03294 1.03488 1.25375 1.01616 0.97171 1.08900 1.20217 0.92681 0.99785 1.05442 1.20270 0.96968 0.95681 1.04321 1.25522 0.99457 0.97311 1.10215 1.20580 0.88260 0.92986 0.94445 0.89463 1.21722 0.92551 0.97419 0.93149 1.58430 1.03447 1.54105 1.21163 1.62124 1.55524 1.02695 1.02338 1.22427 0.94321 0.94463 0.99376 1.19430 0.91587 0.94270 0.86275 0.98647 1.21707 0.99805 0.97185 0.99527 1.22254 1.39012 0.97948 1.03566 0.93474 1.26929 0.92662 1.04849 0.98202 1.70891 1.38844 1.05459 1.42533 0.83038 0.76903 0.72315 0.74621 1.21299 1.20042 1.20031 1.84877 0.97259 1.09715 1.72799 0.89149 0.92205 0.89492 0.82697 0.83216 0.91764 0.93758 0.83676 0.84040 0.97297 0.89526 0.92890 0.94113 0.94840 0.94818 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.90 10.38 71.24 0.74 -1.16 16 2 C -0.21 -6.77 6.51 24.59 0.16 -6.61 16 3 C -0.15 -4.53 10.05 21.21 0.21 -4.31 16 4 C -0.14 -4.47 10.04 21.22 0.21 -4.26 16 5 C -0.21 -7.23 4.03 24.59 0.10 -7.14 16 6 C 0.15 5.12 2.03 44.17 0.09 5.21 16 7 H 0.09 2.99 7.05 -2.39 -0.02 2.98 16 8 C 0.08 2.26 5.48 86.30 0.47 2.74 16 9 N -0.84 -20.75 8.73 -186.72 -1.63 -22.38 16 10 N -0.50 -21.23 4.46 -880.58 -3.93 -25.16 16 11 C 0.04 1.76 8.18 127.69 1.04 2.80 16 12 C 0.19 9.64 1.24 44.17 0.05 9.69 16 13 H 0.00 -0.20 4.77 -2.39 -0.01 -0.21 16 14 C -0.12 -6.05 8.54 71.98 0.61 -5.43 16 15 C -0.59 -33.20 7.77 25.60 0.20 -33.00 16 16 H 0.05 2.69 6.34 -2.91 -0.02 2.67 16 17 C -0.03 -1.62 5.20 84.65 0.44 -1.18 16 18 N -0.94 -57.49 13.02 21.44 0.28 -57.21 16 19 Si 1.11 51.60 29.91 68.60 2.05 53.65 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 S 0.09 3.28 17.86 -56.49 -1.01 2.27 16 24 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 26 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 28 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 29 H 0.06 1.86 6.64 -2.39 -0.02 1.84 16 30 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.35 6.57 9.08 -89.69 -0.81 5.76 16 32 H 0.35 8.24 8.93 -89.69 -0.80 7.44 16 33 H 0.01 0.39 4.31 -16.33 -0.07 0.32 16 34 H 0.09 3.10 5.73 -2.39 -0.01 3.09 16 35 H 0.05 2.41 6.05 -2.39 -0.01 2.40 16 36 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.03 1.44 6.93 -2.39 -0.02 1.43 16 38 H 0.03 1.80 5.95 -2.39 -0.01 1.79 16 39 H 0.26 16.08 5.75 -92.71 -0.53 15.55 16 Total: -1.00 -65.93 309.08 -0.26 -66.19 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.36 Total: 25.30 kcal Atomic # 6 Polarization: -47.00 SS G_CDS: 4.34 Total: -42.66 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -5.28 Total: -104.74 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Atomic # 16 Polarization: 3.28 SS G_CDS: -1.01 Total: 2.27 kcal Total: -65.93 -0.26 -66.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226903948.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.321 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds