Wall clock time and date at job start Mon Mar 30 2020 07:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38420 * 122.54227 * 2 1 4 4 C 1.33382 * 114.92032 * 179.75965 * 3 2 1 5 5 S 1.75888 * 109.59336 * 0.47761 * 4 3 2 6 6 C 1.33391 * 122.53628 * 180.28686 * 2 1 3 7 7 C 1.50704 * 125.20229 * 0.02562 * 6 2 1 8 8 H 1.09003 * 109.47028 * 9.90531 * 7 6 2 9 9 C 1.52997 * 109.46975 * 249.90051 * 7 6 2 10 10 N 1.46899 * 109.46935 * 185.60826 * 9 7 6 11 11 N 1.46902 * 109.46962 * 129.89784 * 7 6 2 12 12 C 1.46907 * 110.99851 * 73.04343 * 11 7 6 13 13 C 1.46904 * 111.00073 * 309.09168 * 11 7 6 14 14 H 1.08990 * 109.47329 * 59.45780 * 13 11 7 15 15 C 1.53000 * 109.46936 * 299.45347 * 13 11 7 16 16 C 1.50708 * 109.46782 * 179.45881 * 13 11 7 17 17 H 1.08002 * 119.99892 * 359.97438 * 16 13 11 18 18 C 1.37872 * 119.99484 * 179.97438 * 16 13 11 19 19 N 1.31514 * 120.00336 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 119.99650 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.47104 * 89.99720 * 20 18 16 22 22 H 1.48506 * 109.46879 * 209.99612 * 20 18 16 23 23 H 1.48499 * 109.47296 * 329.99545 * 20 18 16 24 24 H 1.09002 * 109.47366 * 269.71531 * 1 2 3 25 25 H 1.09000 * 109.47500 * 149.70515 * 1 2 3 26 26 H 1.09006 * 109.46935 * 29.71013 * 1 2 3 27 27 H 1.07997 * 122.53565 * 0.02562 * 3 2 1 28 28 H 1.08005 * 125.20469 * 180.21252 * 4 3 2 29 29 H 1.09003 * 109.46952 * 305.60186 * 9 7 6 30 30 H 1.08998 * 109.47340 * 65.60978 * 9 7 6 31 31 H 1.00904 * 111.00302 * 184.26996 * 10 9 7 32 32 H 1.00903 * 110.99837 * 308.22417 * 10 9 7 33 33 H 1.08998 * 109.47037 * 51.88097 * 12 11 7 34 34 H 1.08995 * 109.47041 * 171.89166 * 12 11 7 35 35 H 1.09002 * 109.46946 * 291.88834 * 12 11 7 36 36 H 1.09000 * 109.47043 * 65.36652 * 15 13 11 37 37 H 1.08996 * 109.47333 * 185.36839 * 15 13 11 38 38 H 1.09006 * 109.47285 * 305.37016 * 15 13 11 39 39 H 0.97003 * 120.00156 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9900 0.0051 5 16 3.9385 -0.7306 -0.0036 6 6 2.2245 -1.1245 -0.0056 7 6 1.6535 -2.5192 -0.0132 8 1 0.5790 -2.4710 -0.1901 9 6 1.9186 -3.1861 1.3381 10 7 1.4828 -4.5880 1.2861 11 7 2.2906 -3.3033 -1.0796 12 6 3.6721 -3.6529 -0.7225 13 6 2.2435 -2.5857 -2.3606 14 1 2.7602 -1.6312 -2.2616 15 6 0.7856 -2.3382 -2.7531 16 6 2.9167 -3.4134 -3.4250 17 1 3.3378 -4.3759 -3.1748 18 6 2.9949 -2.9417 -4.7182 19 7 2.4817 -1.7698 -5.0229 20 14 3.8300 -3.9672 -6.0375 21 1 2.8282 -4.8520 -6.6846 22 1 4.4293 -3.0691 -7.0571 23 1 4.8963 -4.7957 -5.4195 24 1 -0.3634 -0.0051 1.0276 25 1 -0.3634 -0.8873 -0.5184 26 1 -0.3633 0.8926 -0.5094 27 1 1.7965 2.1463 0.0004 28 1 4.3078 1.7821 0.0092 29 1 2.9849 -3.1451 1.5605 30 1 1.3645 -2.6620 2.1168 31 1 1.5828 -5.0314 2.1870 32 1 0.5336 -4.6594 0.9513 33 1 3.6861 -4.1170 0.2636 34 1 4.0721 -4.3504 -1.4583 35 1 4.2830 -2.7503 -0.7078 36 1 0.3253 -1.6617 -2.0329 37 1 0.7476 -1.8917 -3.7467 38 1 0.2451 -3.2848 -2.7592 39 1 2.5365 -1.4381 -5.9328 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226904183.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:09 Heat of formation + Delta-G solvation = 49.107502 kcal Electronic energy + Delta-G solvation = -19712.574711 eV Core-core repulsion = 16975.327452 eV Total energy + Delta-G solvation = -2737.247259 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90950 -36.82444 -34.19448 -32.29336 -30.73003 -29.26334 -28.28230 -25.85281 -24.89187 -24.07856 -22.43513 -20.97928 -19.29275 -18.06816 -16.66405 -16.15862 -15.47112 -15.08873 -14.90970 -14.44650 -14.01957 -13.70636 -13.20097 -12.96254 -12.78988 -12.59855 -12.29200 -12.00619 -11.66421 -11.52536 -11.37629 -11.11058 -10.93928 -10.75746 -10.60316 -10.39287 -10.15946 -9.93689 -9.85811 -9.65134 -8.80363 -8.35087 -8.31448 -8.00940 -7.83660 -7.00177 -5.91529 -3.95377 1.51406 2.17752 2.54825 3.16445 3.35747 3.41840 3.45443 4.47378 4.72898 5.10366 5.30666 5.32758 5.40336 5.50390 5.61537 5.73602 5.83396 5.89244 5.91210 5.92671 6.17410 6.36016 6.39826 6.48798 6.59603 6.85087 6.93294 6.98991 7.01359 7.16895 7.27988 7.38444 7.64574 7.73359 7.84037 7.92420 8.31288 8.43807 8.70119 9.11488 9.68586 11.14592 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018063 B = 0.007962 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.726177 B = 3516.015025 C = 4006.490363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.113 4.113 3 C -0.129 4.129 4 C -0.243 4.243 5 S 0.119 5.881 6 C -0.180 4.180 7 C 0.148 3.852 8 H 0.092 0.908 9 C 0.070 3.930 10 N -0.830 5.830 11 N -0.504 5.504 12 C 0.033 3.967 13 C 0.207 3.793 14 H 0.013 0.987 15 C -0.136 4.136 16 C -0.499 4.499 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.282 1.282 22 H -0.289 1.289 23 H -0.275 1.275 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.153 0.847 29 H 0.071 0.929 30 H 0.022 0.978 31 H 0.331 0.669 32 H 0.342 0.658 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.010 0.990 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 2.615 12.958 13.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.160 4.160 4 C -0.378 4.378 5 S 0.385 5.615 6 C -0.300 4.300 7 C 0.036 3.964 8 H 0.110 0.890 9 C -0.061 4.061 10 N -0.359 5.359 11 N -0.226 5.226 12 C -0.116 4.116 13 C 0.101 3.899 14 H 0.030 0.970 15 C -0.194 4.194 16 C -0.538 4.538 17 H 0.080 0.920 18 C -0.142 4.142 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.200 1.200 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.143 0.857 32 H 0.155 0.845 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.031 0.969 36 H 0.029 0.971 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.195 1.362 12.191 12.269 hybrid contribution -1.025 1.683 -0.232 1.984 sum -1.220 3.045 11.960 12.401 Atomic orbital electron populations 1.20548 0.90520 1.02907 1.01168 1.18695 0.96982 0.91667 1.05223 1.19888 0.92950 0.98706 1.04482 1.25809 0.99641 1.01181 1.11209 1.84451 1.06428 0.98499 1.72121 1.25328 0.95660 1.00438 1.08595 1.20543 0.99551 0.84052 0.92238 0.88987 1.21912 1.00476 0.88544 0.95161 1.58480 1.30373 1.15192 1.31822 1.62421 1.16611 1.41554 1.02006 1.22489 0.89473 0.98746 1.00881 1.19379 0.93798 0.92673 0.84073 0.96986 1.21875 0.97097 0.98176 1.02218 1.21184 1.35570 1.04038 0.92972 0.91998 1.24901 0.95840 0.95050 0.98435 1.69903 1.45778 1.18217 1.19258 0.86587 0.79699 0.80022 0.81608 1.20801 1.21490 1.19977 0.92175 0.91021 0.91968 0.85423 0.82981 0.91076 0.96017 0.85748 0.84468 0.92092 0.90760 0.96870 0.97119 0.89679 0.95188 0.93206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.34 9.58 36.01 0.34 -0.99 16 2 C -0.11 -1.93 5.73 -106.25 -0.61 -2.54 16 3 C -0.13 -2.10 9.98 -41.21 -0.41 -2.51 16 4 C -0.24 -3.95 11.23 29.04 0.33 -3.63 16 5 S 0.12 2.11 19.03 -107.50 -2.05 0.07 16 6 C -0.18 -3.26 3.49 -36.00 -0.13 -3.38 16 7 C 0.15 2.63 1.89 -68.86 -0.13 2.50 16 8 H 0.09 1.65 5.25 -51.93 -0.27 1.38 16 9 C 0.07 1.03 5.48 -3.83 -0.02 1.01 16 10 N -0.83 -11.17 8.85 -10.37 -0.09 -11.27 16 11 N -0.50 -10.66 4.44 -229.68 -1.02 -11.68 16 12 C 0.03 0.67 8.14 60.07 0.49 1.16 16 13 C 0.21 5.18 1.64 -68.86 -0.11 5.07 16 14 H 0.01 0.35 6.13 -51.93 -0.32 0.03 16 15 C -0.14 -3.34 8.65 37.16 0.32 -3.02 16 16 C -0.50 -13.80 7.97 -34.44 -0.27 -14.08 16 17 H 0.06 1.72 6.37 -52.49 -0.33 1.39 16 18 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 19 N -0.89 -25.86 11.29 55.43 0.63 -25.23 16 20 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 1.11 4.70 -51.93 -0.24 0.86 16 26 H 0.06 0.84 8.13 -51.93 -0.42 0.41 16 27 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 28 H 0.15 2.08 8.06 -52.48 -0.42 1.65 16 29 H 0.07 1.08 6.52 -51.93 -0.34 0.74 16 30 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.33 3.55 9.08 -39.29 -0.36 3.19 16 32 H 0.34 4.45 8.94 -39.29 -0.35 4.10 16 33 H 0.06 1.10 5.45 -51.93 -0.28 0.82 16 34 H 0.07 1.63 6.37 -51.93 -0.33 1.30 16 35 H 0.01 0.28 4.65 -33.88 -0.16 0.12 16 36 H 0.01 0.22 4.64 -51.93 -0.24 -0.02 16 37 H 0.08 2.33 5.94 -51.93 -0.31 2.03 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 304.54 15.07 4.59 4.59 Total: -1.00 -29.78 304.54 -8.47 -38.25 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -5.21 Total: 7.37 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -0.30 Total: -18.86 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.49 Total: -48.17 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.05 Total: 0.07 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.78 -8.47 -38.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226904183.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.357 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds