Wall clock time and date at job start Mon Mar 30 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46539 * 2 1 4 4 N 1.30841 * 125.89830 * 270.29649 * 3 2 1 5 5 N 1.40077 * 108.20617 * 180.15213 * 4 3 2 6 6 C 1.46506 * 126.03887 * 179.85844 * 5 4 3 7 7 C 1.34948 * 107.92447 * 359.59262 * 5 4 3 8 8 C 1.35308 * 107.74625 * 0.23925 * 7 5 4 9 9 C 1.50699 * 126.04160 * 179.97438 * 8 7 5 10 10 O 1.42901 * 109.47195 * 25.02666 * 9 8 7 11 11 Si 1.63094 * 114.00497 * 150.00230 * 10 9 8 12 12 C 1.86303 * 109.47118 * 59.99754 * 11 10 9 13 13 C 1.86300 * 109.47613 * 180.02562 * 11 10 9 14 14 C 1.86305 * 109.46723 * 300.00523 * 11 10 9 15 15 C 1.50709 * 109.47156 * 265.03177 * 9 8 7 16 16 N 1.27940 * 119.99686 * 235.00013 * 15 9 8 17 17 Si 1.86793 * 120.00226 * 54.99427 * 15 9 8 18 18 H 1.48506 * 109.47054 * 0.02562 * 17 15 9 19 19 H 1.48504 * 109.47199 * 119.99869 * 17 15 9 20 20 H 1.48493 * 109.47333 * 240.00261 * 17 15 9 21 21 H 1.09003 * 109.47414 * 60.00319 * 1 2 3 22 22 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47616 * 300.00172 * 1 2 3 24 24 H 1.08996 * 109.47177 * 239.99995 * 2 1 3 25 25 H 1.08999 * 109.46979 * 119.99522 * 2 1 3 26 26 H 1.09001 * 109.47060 * 269.69144 * 6 5 4 27 27 H 1.09004 * 109.47073 * 29.68633 * 6 5 4 28 28 H 1.09000 * 109.47212 * 149.68716 * 6 5 4 29 29 H 1.08007 * 126.12452 * 180.22769 * 7 5 4 30 30 H 1.09000 * 109.47345 * 145.02749 * 9 8 7 31 31 H 1.08997 * 109.46743 * 60.00459 * 12 11 10 32 32 H 1.08998 * 109.46973 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47330 * 300.00563 * 12 11 10 34 34 H 1.09000 * 109.46991 * 59.99492 * 13 11 10 35 35 H 1.08997 * 109.46858 * 180.02562 * 13 11 10 36 36 H 1.09004 * 109.46554 * 299.99866 * 13 11 10 37 37 H 1.08999 * 109.47386 * 59.99645 * 14 11 10 38 38 H 1.09006 * 109.46826 * 179.97438 * 14 11 10 39 39 H 1.09005 * 109.46884 * 299.99167 * 14 11 10 40 40 H 0.97003 * 119.99980 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1461 -1.0599 5 7 2.7328 3.4024 -0.6342 6 6 3.1261 4.5162 -1.5009 7 6 2.7346 3.4076 0.7153 8 6 2.3055 2.1942 1.1329 9 6 2.1503 1.7535 2.5657 10 8 1.9511 2.8984 3.3973 11 14 1.0449 2.6070 4.7216 12 6 1.8730 1.3059 5.7667 13 6 0.8657 4.1764 5.7093 14 6 -0.6399 2.0056 4.2011 15 6 3.3940 1.0243 3.0046 16 7 3.3060 -0.1579 3.4860 17 14 5.0638 1.8461 2.8456 18 1 4.8947 3.2022 2.2644 19 1 5.6904 1.9578 4.1873 20 1 5.9338 1.0322 1.9592 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.1926 4.4502 -1.7159 27 1 2.5638 4.4670 -2.4334 28 1 2.9143 5.4600 -0.9983 29 1 3.0264 4.2325 1.3485 30 1 1.2904 1.0890 2.6503 31 1 2.8587 1.6577 6.0712 32 1 1.2676 1.1114 6.6520 33 1 1.9775 0.3877 5.1886 34 1 0.3810 4.9373 5.0976 35 1 0.2605 3.9814 6.5946 36 1 1.8513 4.5285 6.0138 37 1 -0.5354 1.0875 3.6230 38 1 -1.2454 1.8104 5.0862 39 1 -1.1245 2.7669 3.5897 40 1 2.4388 -0.5845 3.5688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226969454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:26 Heat of formation + Delta-G solvation = 19.330200 kcal Electronic energy + Delta-G solvation = -19834.428416 eV Core-core repulsion = 17002.687754 eV Total energy + Delta-G solvation = -2831.740662 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.39174 -39.05348 -35.88330 -35.54778 -32.71679 -31.58888 -29.51316 -28.68751 -28.37101 -28.19851 -26.33047 -24.25779 -22.53884 -21.45477 -20.50637 -18.12972 -17.58413 -17.47433 -16.28603 -15.87277 -15.82200 -15.53210 -15.05705 -14.31483 -14.21686 -14.15720 -13.93497 -13.81665 -13.72175 -13.47131 -13.33527 -13.22129 -13.08660 -12.95469 -12.86440 -12.80469 -12.60890 -12.38767 -12.16605 -11.94605 -11.74933 -11.57694 -11.32263 -10.70153 -10.67937 -10.22315 -10.13155 -9.27178 0.63626 0.94200 1.22471 1.46082 1.61483 1.64828 1.69006 1.88014 1.90744 1.95668 2.08744 2.48465 3.49895 3.73300 3.83986 4.01370 4.15398 4.21375 4.32876 4.38725 4.46172 4.56466 4.66226 4.68349 4.71315 4.72850 4.75938 4.78175 4.78783 4.80895 4.83238 4.87333 4.99392 5.18506 5.25849 5.37560 5.52211 5.59735 5.61571 5.67828 6.11350 6.72736 6.81170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C 0.081 3.919 4 N -0.330 5.330 5 N -0.381 5.381 6 C 0.092 3.908 7 C 0.095 3.905 8 C -0.262 4.262 9 C 0.185 3.815 10 O -0.615 6.615 11 Si 1.285 2.715 12 C -0.523 4.523 13 C -0.472 4.472 14 C -0.517 4.517 15 C -0.043 4.043 16 N -0.624 5.624 17 Si 1.061 2.939 18 H -0.222 1.222 19 H -0.253 1.253 20 H -0.271 1.271 21 H 0.047 0.953 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.206 0.794 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 3.479 0.588 3.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 C -0.086 4.086 4 N -0.152 5.152 5 N -0.162 5.162 6 C -0.048 4.048 7 C -0.053 4.053 8 C -0.275 4.275 9 C 0.124 3.876 10 O -0.572 6.572 11 Si 1.421 2.579 12 C -0.624 4.624 13 C -0.578 4.578 14 C -0.618 4.618 15 C -0.289 4.289 16 N -0.240 5.240 17 Si 0.876 3.124 18 H -0.144 1.144 19 H -0.177 1.177 20 H -0.196 1.196 21 H 0.067 0.933 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.223 0.777 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.957 3.531 -0.676 3.721 hybrid contribution -1.938 -0.427 0.934 2.194 sum -0.982 3.105 0.258 3.266 Atomic orbital electron populations 1.21701 0.93388 1.02980 1.02015 1.20080 0.96841 0.88210 1.03814 1.22417 0.98563 0.97530 0.90055 1.77298 1.22319 0.92124 1.23463 1.48784 1.50359 1.11439 1.05587 1.22219 1.02129 0.85510 0.94965 1.22832 0.98007 0.99943 0.84469 1.19660 1.17640 0.96059 0.94117 1.19837 0.95544 0.85906 0.86265 1.85348 1.79406 1.41747 1.50677 0.76709 0.60064 0.64908 0.56257 1.27336 1.08714 1.14394 1.11971 1.26338 1.05419 1.16534 1.09516 1.27075 1.22047 1.06508 1.06190 1.32321 1.09372 0.95501 0.91725 1.69486 1.35006 1.10102 1.09384 0.83554 0.69306 0.78989 0.80565 1.14367 1.17723 1.19555 0.93341 0.90348 0.92278 0.90242 0.89511 0.89495 0.89340 0.86615 0.77689 0.90165 0.91277 0.90423 0.91868 0.90646 0.90012 0.90527 0.91488 0.90425 0.91227 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 0.01 9.89 71.98 0.71 0.73 16 2 C -0.05 -0.09 6.27 29.85 0.19 0.10 16 3 C 0.08 0.45 6.47 43.10 0.28 0.73 16 4 N -0.33 -2.76 12.58 -47.38 -0.60 -3.35 16 5 N -0.38 -1.18 4.01 -369.54 -1.48 -2.66 16 6 C 0.09 -0.46 11.47 127.77 1.47 1.01 16 7 C 0.10 0.13 9.50 83.54 0.79 0.93 16 8 C -0.26 -0.82 4.35 -20.15 -0.09 -0.91 16 9 C 0.19 0.08 1.93 29.10 0.06 0.14 16 10 O -0.61 0.69 7.47 -148.98 -1.11 -0.42 16 11 Si 1.29 -4.71 12.68 68.60 0.87 -3.84 16 12 C -0.52 0.59 8.04 113.37 0.91 1.50 16 13 C -0.47 1.54 8.65 113.37 0.98 2.52 16 14 C -0.52 1.21 8.56 113.37 0.97 2.18 16 15 C -0.04 -0.09 3.95 88.68 0.35 0.26 16 16 N -0.62 -1.64 12.06 24.11 0.29 -1.35 16 17 Si 1.06 2.44 28.23 68.60 1.94 4.37 16 18 H -0.22 0.28 6.24 99.48 0.62 0.90 16 19 H -0.25 -0.74 7.11 99.48 0.71 -0.03 16 20 H -0.27 -1.44 7.11 99.48 0.71 -0.73 16 21 H 0.05 0.12 8.14 -2.39 -0.02 0.10 16 22 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 23 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 24 H 0.08 0.17 8.14 -2.39 -0.02 0.15 16 25 H 0.09 -0.06 7.96 -2.39 -0.02 -0.08 16 26 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.09 -0.40 8.14 -2.38 -0.02 -0.42 16 28 H 0.12 -1.21 8.14 -2.39 -0.02 -1.23 16 29 H 0.21 -0.87 7.89 -2.91 -0.02 -0.89 16 30 H 0.08 -0.17 5.80 -2.39 -0.01 -0.19 16 31 H 0.07 0.01 7.96 -2.39 -0.02 -0.01 16 32 H 0.08 -0.16 7.96 -2.39 -0.02 -0.18 16 33 H 0.06 -0.03 5.17 -2.39 -0.01 -0.04 16 34 H 0.07 -0.24 7.96 -2.39 -0.02 -0.26 16 35 H 0.08 -0.34 7.96 -2.39 -0.02 -0.36 16 36 H 0.08 -0.25 7.96 -2.38 -0.02 -0.27 16 37 H 0.07 -0.17 7.10 -2.39 -0.02 -0.19 16 38 H 0.08 -0.23 7.96 -2.38 -0.02 -0.25 16 39 H 0.07 -0.09 7.96 -2.38 -0.02 -0.11 16 40 H 0.33 -0.27 7.58 -92.71 -0.70 -0.97 16 Total: 0.00 -11.52 330.82 7.50 -4.02 By element: Atomic # 1 Polarization: -6.94 SS G_CDS: 0.98 Total: -5.96 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.62 Total: 9.19 kcal Atomic # 7 Polarization: -5.57 SS G_CDS: -1.79 Total: -7.36 kcal Atomic # 8 Polarization: 0.69 SS G_CDS: -1.11 Total: -0.42 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.81 Total: 0.54 kcal Total: -11.52 7.50 -4.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226969454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.347 kcal (2) G-P(sol) polarization free energy of solvation -11.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -4.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds