Wall clock time and date at job start Mon Mar 30 2020 07:56:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50704 * 109.46539 * 2 1
4 4 N 1.30841 * 125.89830 * 270.29649 * 3 2 1
5 5 N 1.40077 * 108.20617 * 180.15213 * 4 3 2
6 6 C 1.46506 * 126.03887 * 179.85844 * 5 4 3
7 7 C 1.34948 * 107.92447 * 359.59262 * 5 4 3
8 8 C 1.35308 * 107.74625 * 0.23925 * 7 5 4
9 9 C 1.50699 * 126.04160 * 179.97438 * 8 7 5
10 10 O 1.42901 * 109.47195 * 25.02666 * 9 8 7
11 11 Si 1.63094 * 114.00497 * 150.00230 * 10 9 8
12 12 C 1.86303 * 109.47118 * 59.99754 * 11 10 9
13 13 C 1.86300 * 109.47613 * 180.02562 * 11 10 9
14 14 C 1.86305 * 109.46723 * 300.00523 * 11 10 9
15 15 C 1.50709 * 109.47156 * 265.03177 * 9 8 7
16 16 N 1.27940 * 119.99686 * 235.00013 * 15 9 8
17 17 Si 1.86793 * 120.00226 * 54.99427 * 15 9 8
18 18 H 1.48506 * 109.47054 * 0.02562 * 17 15 9
19 19 H 1.48504 * 109.47199 * 119.99869 * 17 15 9
20 20 H 1.48493 * 109.47333 * 240.00261 * 17 15 9
21 21 H 1.09003 * 109.47414 * 60.00319 * 1 2 3
22 22 H 1.09003 * 109.47200 * 180.02562 * 1 2 3
23 23 H 1.09000 * 109.47616 * 300.00172 * 1 2 3
24 24 H 1.08996 * 109.47177 * 239.99995 * 2 1 3
25 25 H 1.08999 * 109.46979 * 119.99522 * 2 1 3
26 26 H 1.09001 * 109.47060 * 269.69144 * 6 5 4
27 27 H 1.09004 * 109.47073 * 29.68633 * 6 5 4
28 28 H 1.09000 * 109.47212 * 149.68716 * 6 5 4
29 29 H 1.08007 * 126.12452 * 180.22769 * 7 5 4
30 30 H 1.09000 * 109.47345 * 145.02749 * 9 8 7
31 31 H 1.08997 * 109.46743 * 60.00459 * 12 11 10
32 32 H 1.08998 * 109.46973 * 179.97438 * 12 11 10
33 33 H 1.08999 * 109.47330 * 300.00563 * 12 11 10
34 34 H 1.09000 * 109.46991 * 59.99492 * 13 11 10
35 35 H 1.08997 * 109.46858 * 180.02562 * 13 11 10
36 36 H 1.09004 * 109.46554 * 299.99866 * 13 11 10
37 37 H 1.08999 * 109.47386 * 59.99645 * 14 11 10
38 38 H 1.09006 * 109.46826 * 179.97438 * 14 11 10
39 39 H 1.09005 * 109.46884 * 299.99167 * 14 11 10
40 40 H 0.97003 * 119.99980 * 359.97438 * 16 15 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0322 1.4209 0.0000
4 7 2.2827 2.1461 -1.0599
5 7 2.7328 3.4024 -0.6342
6 6 3.1261 4.5162 -1.5009
7 6 2.7346 3.4076 0.7153
8 6 2.3055 2.1942 1.1329
9 6 2.1503 1.7535 2.5657
10 8 1.9511 2.8984 3.3973
11 14 1.0449 2.6070 4.7216
12 6 1.8730 1.3059 5.7667
13 6 0.8657 4.1764 5.7093
14 6 -0.6399 2.0056 4.2011
15 6 3.3940 1.0243 3.0046
16 7 3.3060 -0.1579 3.4860
17 14 5.0638 1.8461 2.8456
18 1 4.8947 3.2022 2.2644
19 1 5.6904 1.9578 4.1873
20 1 5.9338 1.0322 1.9592
21 1 -0.3634 0.5138 -0.8900
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5138 0.8899
24 1 1.8933 -0.5138 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 4.1926 4.4502 -1.7159
27 1 2.5638 4.4670 -2.4334
28 1 2.9143 5.4600 -0.9983
29 1 3.0264 4.2325 1.3485
30 1 1.2904 1.0890 2.6503
31 1 2.8587 1.6577 6.0712
32 1 1.2676 1.1114 6.6520
33 1 1.9775 0.3877 5.1886
34 1 0.3810 4.9373 5.0976
35 1 0.2605 3.9814 6.5946
36 1 1.8513 4.5285 6.0138
37 1 -0.5354 1.0875 3.6230
38 1 -1.2454 1.8104 5.0862
39 1 -1.1245 2.7669 3.5897
40 1 2.4388 -0.5845 3.5688
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000226969462.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:56:33
Heat of formation + Delta-G solvation = 10.747321 kcal
Electronic energy + Delta-G solvation = -19834.800598 eV
Core-core repulsion = 17002.687754 eV
Total energy + Delta-G solvation = -2832.112844 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 269.143 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-42.34898 -39.05302 -35.87407 -35.52904 -32.75813 -31.53264 -29.60877 -28.76698
-28.44646 -28.28362 -26.33092 -24.26884 -22.49710 -21.41539 -20.45870 -18.15103
-17.60081 -17.45678 -16.29663 -15.85487 -15.79754 -15.53434 -15.07362 -14.40203
-14.28605 -14.20989 -13.97505 -13.88729 -13.79056 -13.53985 -13.40838 -13.34026
-13.17707 -12.98621 -12.88625 -12.77798 -12.64227 -12.39344 -12.15360 -11.91868
-11.76982 -11.49980 -11.27165 -10.77802 -10.72251 -10.15972 -10.11278 -9.23365
0.67079 0.99561 1.28697 1.41378 1.58509 1.69700 1.74286 1.79393
1.94835 1.97031 2.02686 2.40273 3.47236 3.73109 3.84016 3.99926
4.05067 4.19275 4.21709 4.27508 4.39415 4.47996 4.54060 4.61742
4.64495 4.65519 4.66362 4.69826 4.71275 4.76033 4.78701 4.82657
4.96814 5.19615 5.25532 5.33835 5.44798 5.52538 5.55090 5.68892
6.06871 6.79513 6.81703
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.048 4.048
3 C 0.091 3.909
4 N -0.291 5.291
5 N -0.377 5.377
6 C 0.100 3.900
7 C 0.097 3.903
8 C -0.251 4.251
9 C 0.184 3.816
10 O -0.611 6.611
11 Si 1.250 2.750
12 C -0.513 4.513
13 C -0.464 4.464
14 C -0.509 4.509
15 C -0.044 4.044
16 N -0.612 5.612
17 Si 1.064 2.936
18 H -0.243 1.243
19 H -0.248 1.248
20 H -0.251 1.251
21 H 0.060 0.940
22 H 0.064 0.936
23 H 0.056 0.944
24 H 0.083 0.917
25 H 0.077 0.923
26 H 0.077 0.923
27 H 0.090 0.910
28 H 0.090 0.910
29 H 0.184 0.816
30 H 0.070 0.930
31 H 0.074 0.926
32 H 0.073 0.927
33 H 0.066 0.934
34 H 0.074 0.926
35 H 0.076 0.924
36 H 0.075 0.925
37 H 0.065 0.935
38 H 0.074 0.926
39 H 0.072 0.928
40 H 0.323 0.677
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.408 2.803 0.131 2.835
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.088 4.088
3 C -0.076 4.076
4 N -0.112 5.112
5 N -0.157 5.157
6 C -0.041 4.041
7 C -0.050 4.050
8 C -0.263 4.263
9 C 0.123 3.877
10 O -0.568 6.568
11 Si 1.387 2.613
12 C -0.615 4.615
13 C -0.570 4.570
14 C -0.610 4.610
15 C -0.290 4.290
16 N -0.226 5.226
17 Si 0.878 3.122
18 H -0.166 1.166
19 H -0.172 1.172
20 H -0.175 1.175
21 H 0.079 0.921
22 H 0.083 0.917
23 H 0.075 0.925
24 H 0.102 0.898
25 H 0.095 0.905
26 H 0.096 0.904
27 H 0.109 0.891
28 H 0.108 0.892
29 H 0.201 0.799
30 H 0.087 0.913
31 H 0.093 0.907
32 H 0.092 0.908
33 H 0.085 0.915
34 H 0.093 0.907
35 H 0.095 0.905
36 H 0.094 0.906
37 H 0.084 0.916
38 H 0.093 0.907
39 H 0.092 0.908
40 H 0.142 0.858
Dipole moment (debyes) X Y Z Total
from point charges 1.248 2.848 -1.129 3.308
hybrid contribution -2.055 -0.216 1.077 2.331
sum -0.807 2.632 -0.052 2.753
Atomic orbital electron populations
1.21735 0.93947 1.02298 1.02555 1.20009 0.96373 0.88831 1.03567
1.22121 0.98709 0.96910 0.89864 1.77372 1.20811 0.90757 1.22297
1.48472 1.50850 1.11477 1.04915 1.21928 1.01605 0.85513 0.95051
1.22415 0.98722 0.99484 0.84383 1.19486 1.17218 0.95792 0.93822
1.19871 0.95466 0.85661 0.86715 1.85366 1.79141 1.41862 1.50426
0.77319 0.61048 0.65748 0.57226 1.27191 1.08796 1.13996 1.11488
1.26263 1.05227 1.16377 1.09182 1.26977 1.21532 1.06484 1.06051
1.32353 1.09166 0.95499 0.91932 1.69502 1.34210 1.09840 1.09085
0.83509 0.69499 0.78081 0.81156 1.16556 1.17210 1.17525 0.92090
0.91657 0.92526 0.89827 0.90463 0.90426 0.89112 0.89175 0.79885
0.91258 0.90667 0.90766 0.91537 0.90723 0.90481 0.90607 0.91618
0.90720 0.90843 0.85792
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 0.03 9.89 37.16 0.37 0.40 16
2 C -0.05 -0.03 6.27 -27.88 -0.17 -0.20 16
3 C 0.09 0.23 6.47 -82.40 -0.53 -0.30 16
4 N -0.29 -1.10 12.58 33.67 0.42 -0.68 16
5 N -0.38 -0.59 4.01 -68.16 -0.27 -0.87 16
6 C 0.10 -0.23 11.47 59.85 0.69 0.46 16
7 C 0.10 0.10 9.50 -17.23 -0.16 -0.07 16
8 C -0.25 -0.41 4.35 -105.06 -0.46 -0.86 16
9 C 0.18 0.07 1.93 -29.03 -0.06 0.02 16
10 O -0.61 0.12 7.47 -35.23 -0.26 -0.14 16
11 Si 1.25 -1.94 12.68 -169.99 -2.16 -4.09 16
12 C -0.51 0.24 8.04 101.05 0.81 1.05 16
13 C -0.46 0.59 8.65 101.05 0.87 1.47 16
14 C -0.51 0.47 8.56 101.05 0.87 1.33 16
15 C -0.04 -0.04 3.95 -13.90 -0.05 -0.10 16
16 N -0.61 -0.75 12.06 56.23 0.68 -0.08 16
17 Si 1.06 1.11 28.23 -169.99 -4.80 -3.69 16
18 H -0.24 0.05 6.24 56.52 0.35 0.40 16
19 H -0.25 -0.31 7.11 56.52 0.40 0.09 16
20 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16
21 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16
22 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16
23 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16
24 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16
25 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16
26 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16
27 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16
28 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16
29 H 0.18 -0.25 7.89 -52.48 -0.41 -0.66 16
30 H 0.07 -0.06 5.80 -51.93 -0.30 -0.36 16
31 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16
32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16
33 H 0.07 -0.01 5.17 -51.93 -0.27 -0.28 16
34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16
35 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16
36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16
37 H 0.06 -0.07 7.10 -51.93 -0.37 -0.44 16
38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16
39 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16
40 H 0.32 -0.13 7.58 -40.82 -0.31 -0.44 16
LS Contribution 330.82 15.07 4.99 4.99
Total: 0.00 -4.85 330.82 -6.01 -10.86
By element:
Atomic # 1 Polarization: -2.72 SS G_CDS: -6.77 Total: -9.50 kcal
Atomic # 6 Polarization: 1.02 SS G_CDS: 2.17 Total: 3.19 kcal
Atomic # 7 Polarization: -2.44 SS G_CDS: 0.83 Total: -1.62 kcal
Atomic # 8 Polarization: 0.12 SS G_CDS: -0.26 Total: -0.14 kcal
Atomic # 14 Polarization: -0.83 SS G_CDS: -6.95 Total: -7.78 kcal
Total LS contribution 4.99 Total: 4.99 kcal
Total: -4.85 -6.01 -10.86 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000226969462.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.610 kcal
(2) G-P(sol) polarization free energy of solvation -4.851 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.759 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds