Wall clock time and date at job start Mon Mar 30 2020 07:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46539 * 2 1 4 4 N 1.30841 * 125.89830 * 270.29649 * 3 2 1 5 5 N 1.40077 * 108.20617 * 180.15213 * 4 3 2 6 6 C 1.46506 * 126.03887 * 179.85844 * 5 4 3 7 7 C 1.34948 * 107.92447 * 359.59262 * 5 4 3 8 8 C 1.35308 * 107.74625 * 0.23925 * 7 5 4 9 9 C 1.50699 * 126.04160 * 179.97438 * 8 7 5 10 10 O 1.42901 * 109.47195 * 25.02666 * 9 8 7 11 11 Si 1.63094 * 114.00497 * 150.00230 * 10 9 8 12 12 C 1.86303 * 109.47118 * 59.99754 * 11 10 9 13 13 C 1.86300 * 109.47613 * 180.02562 * 11 10 9 14 14 C 1.86305 * 109.46723 * 300.00523 * 11 10 9 15 15 C 1.50709 * 109.47156 * 265.03177 * 9 8 7 16 16 N 1.27940 * 119.99686 * 235.00013 * 15 9 8 17 17 Si 1.86793 * 120.00226 * 54.99427 * 15 9 8 18 18 H 1.48506 * 109.47054 * 0.02562 * 17 15 9 19 19 H 1.48504 * 109.47199 * 119.99869 * 17 15 9 20 20 H 1.48493 * 109.47333 * 240.00261 * 17 15 9 21 21 H 1.09003 * 109.47414 * 60.00319 * 1 2 3 22 22 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47616 * 300.00172 * 1 2 3 24 24 H 1.08996 * 109.47177 * 239.99995 * 2 1 3 25 25 H 1.08999 * 109.46979 * 119.99522 * 2 1 3 26 26 H 1.09001 * 109.47060 * 269.69144 * 6 5 4 27 27 H 1.09004 * 109.47073 * 29.68633 * 6 5 4 28 28 H 1.09000 * 109.47212 * 149.68716 * 6 5 4 29 29 H 1.08007 * 126.12452 * 180.22769 * 7 5 4 30 30 H 1.09000 * 109.47345 * 145.02749 * 9 8 7 31 31 H 1.08997 * 109.46743 * 60.00459 * 12 11 10 32 32 H 1.08998 * 109.46973 * 179.97438 * 12 11 10 33 33 H 1.08999 * 109.47330 * 300.00563 * 12 11 10 34 34 H 1.09000 * 109.46991 * 59.99492 * 13 11 10 35 35 H 1.08997 * 109.46858 * 180.02562 * 13 11 10 36 36 H 1.09004 * 109.46554 * 299.99866 * 13 11 10 37 37 H 1.08999 * 109.47386 * 59.99645 * 14 11 10 38 38 H 1.09006 * 109.46826 * 179.97438 * 14 11 10 39 39 H 1.09005 * 109.46884 * 299.99167 * 14 11 10 40 40 H 0.97003 * 119.99980 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2827 2.1461 -1.0599 5 7 2.7328 3.4024 -0.6342 6 6 3.1261 4.5162 -1.5009 7 6 2.7346 3.4076 0.7153 8 6 2.3055 2.1942 1.1329 9 6 2.1503 1.7535 2.5657 10 8 1.9511 2.8984 3.3973 11 14 1.0449 2.6070 4.7216 12 6 1.8730 1.3059 5.7667 13 6 0.8657 4.1764 5.7093 14 6 -0.6399 2.0056 4.2011 15 6 3.3940 1.0243 3.0046 16 7 3.3060 -0.1579 3.4860 17 14 5.0638 1.8461 2.8456 18 1 4.8947 3.2022 2.2644 19 1 5.6904 1.9578 4.1873 20 1 5.9338 1.0322 1.9592 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 4.1926 4.4502 -1.7159 27 1 2.5638 4.4670 -2.4334 28 1 2.9143 5.4600 -0.9983 29 1 3.0264 4.2325 1.3485 30 1 1.2904 1.0890 2.6503 31 1 2.8587 1.6577 6.0712 32 1 1.2676 1.1114 6.6520 33 1 1.9775 0.3877 5.1886 34 1 0.3810 4.9373 5.0976 35 1 0.2605 3.9814 6.5946 36 1 1.8513 4.5285 6.0138 37 1 -0.5354 1.0875 3.6230 38 1 -1.2454 1.8104 5.0862 39 1 -1.1245 2.7669 3.5897 40 1 2.4388 -0.5845 3.5688 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226969462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:56:33 Heat of formation + Delta-G solvation = 10.747321 kcal Electronic energy + Delta-G solvation = -19834.800598 eV Core-core repulsion = 17002.687754 eV Total energy + Delta-G solvation = -2832.112844 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34898 -39.05302 -35.87407 -35.52904 -32.75813 -31.53264 -29.60877 -28.76698 -28.44646 -28.28362 -26.33092 -24.26884 -22.49710 -21.41539 -20.45870 -18.15103 -17.60081 -17.45678 -16.29663 -15.85487 -15.79754 -15.53434 -15.07362 -14.40203 -14.28605 -14.20989 -13.97505 -13.88729 -13.79056 -13.53985 -13.40838 -13.34026 -13.17707 -12.98621 -12.88625 -12.77798 -12.64227 -12.39344 -12.15360 -11.91868 -11.76982 -11.49980 -11.27165 -10.77802 -10.72251 -10.15972 -10.11278 -9.23365 0.67079 0.99561 1.28697 1.41378 1.58509 1.69700 1.74286 1.79393 1.94835 1.97031 2.02686 2.40273 3.47236 3.73109 3.84016 3.99926 4.05067 4.19275 4.21709 4.27508 4.39415 4.47996 4.54060 4.61742 4.64495 4.65519 4.66362 4.69826 4.71275 4.76033 4.78701 4.82657 4.96814 5.19615 5.25532 5.33835 5.44798 5.52538 5.55090 5.68892 6.06871 6.79513 6.81703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.048 4.048 3 C 0.091 3.909 4 N -0.291 5.291 5 N -0.377 5.377 6 C 0.100 3.900 7 C 0.097 3.903 8 C -0.251 4.251 9 C 0.184 3.816 10 O -0.611 6.611 11 Si 1.250 2.750 12 C -0.513 4.513 13 C -0.464 4.464 14 C -0.509 4.509 15 C -0.044 4.044 16 N -0.612 5.612 17 Si 1.064 2.936 18 H -0.243 1.243 19 H -0.248 1.248 20 H -0.251 1.251 21 H 0.060 0.940 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.184 0.816 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.323 0.677 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 2.803 0.131 2.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.076 4.076 4 N -0.112 5.112 5 N -0.157 5.157 6 C -0.041 4.041 7 C -0.050 4.050 8 C -0.263 4.263 9 C 0.123 3.877 10 O -0.568 6.568 11 Si 1.387 2.613 12 C -0.615 4.615 13 C -0.570 4.570 14 C -0.610 4.610 15 C -0.290 4.290 16 N -0.226 5.226 17 Si 0.878 3.122 18 H -0.166 1.166 19 H -0.172 1.172 20 H -0.175 1.175 21 H 0.079 0.921 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.201 0.799 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.248 2.848 -1.129 3.308 hybrid contribution -2.055 -0.216 1.077 2.331 sum -0.807 2.632 -0.052 2.753 Atomic orbital electron populations 1.21735 0.93947 1.02298 1.02555 1.20009 0.96373 0.88831 1.03567 1.22121 0.98709 0.96910 0.89864 1.77372 1.20811 0.90757 1.22297 1.48472 1.50850 1.11477 1.04915 1.21928 1.01605 0.85513 0.95051 1.22415 0.98722 0.99484 0.84383 1.19486 1.17218 0.95792 0.93822 1.19871 0.95466 0.85661 0.86715 1.85366 1.79141 1.41862 1.50426 0.77319 0.61048 0.65748 0.57226 1.27191 1.08796 1.13996 1.11488 1.26263 1.05227 1.16377 1.09182 1.26977 1.21532 1.06484 1.06051 1.32353 1.09166 0.95499 0.91932 1.69502 1.34210 1.09840 1.09085 0.83509 0.69499 0.78081 0.81156 1.16556 1.17210 1.17525 0.92090 0.91657 0.92526 0.89827 0.90463 0.90426 0.89112 0.89175 0.79885 0.91258 0.90667 0.90766 0.91537 0.90723 0.90481 0.90607 0.91618 0.90720 0.90843 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.03 9.89 37.16 0.37 0.40 16 2 C -0.05 -0.03 6.27 -27.88 -0.17 -0.20 16 3 C 0.09 0.23 6.47 -82.40 -0.53 -0.30 16 4 N -0.29 -1.10 12.58 33.67 0.42 -0.68 16 5 N -0.38 -0.59 4.01 -68.16 -0.27 -0.87 16 6 C 0.10 -0.23 11.47 59.85 0.69 0.46 16 7 C 0.10 0.10 9.50 -17.23 -0.16 -0.07 16 8 C -0.25 -0.41 4.35 -105.06 -0.46 -0.86 16 9 C 0.18 0.07 1.93 -29.03 -0.06 0.02 16 10 O -0.61 0.12 7.47 -35.23 -0.26 -0.14 16 11 Si 1.25 -1.94 12.68 -169.99 -2.16 -4.09 16 12 C -0.51 0.24 8.04 101.05 0.81 1.05 16 13 C -0.46 0.59 8.65 101.05 0.87 1.47 16 14 C -0.51 0.47 8.56 101.05 0.87 1.33 16 15 C -0.04 -0.04 3.95 -13.90 -0.05 -0.10 16 16 N -0.61 -0.75 12.06 56.23 0.68 -0.08 16 17 Si 1.06 1.11 28.23 -169.99 -4.80 -3.69 16 18 H -0.24 0.05 6.24 56.52 0.35 0.40 16 19 H -0.25 -0.31 7.11 56.52 0.40 0.09 16 20 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 21 H 0.06 0.05 8.14 -51.93 -0.42 -0.37 16 22 H 0.06 -0.09 8.14 -51.93 -0.42 -0.51 16 23 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 24 H 0.08 0.04 8.14 -51.93 -0.42 -0.38 16 25 H 0.08 -0.04 7.96 -51.93 -0.41 -0.45 16 26 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 27 H 0.09 -0.22 8.14 -51.93 -0.42 -0.64 16 28 H 0.09 -0.41 8.14 -51.93 -0.42 -0.83 16 29 H 0.18 -0.25 7.89 -52.48 -0.41 -0.66 16 30 H 0.07 -0.06 5.80 -51.93 -0.30 -0.36 16 31 H 0.07 0.00 7.96 -51.93 -0.41 -0.41 16 32 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 33 H 0.07 -0.01 5.17 -51.93 -0.27 -0.28 16 34 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 35 H 0.08 -0.13 7.96 -51.93 -0.41 -0.54 16 36 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.06 -0.07 7.10 -51.93 -0.37 -0.44 16 38 H 0.07 -0.09 7.96 -51.93 -0.41 -0.50 16 39 H 0.07 -0.03 7.96 -51.93 -0.41 -0.45 16 40 H 0.32 -0.13 7.58 -40.82 -0.31 -0.44 16 LS Contribution 330.82 15.07 4.99 4.99 Total: 0.00 -4.85 330.82 -6.01 -10.86 By element: Atomic # 1 Polarization: -2.72 SS G_CDS: -6.77 Total: -9.50 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 2.17 Total: 3.19 kcal Atomic # 7 Polarization: -2.44 SS G_CDS: 0.83 Total: -1.62 kcal Atomic # 8 Polarization: 0.12 SS G_CDS: -0.26 Total: -0.14 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -6.95 Total: -7.78 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -4.85 -6.01 -10.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226969462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.610 kcal (2) G-P(sol) polarization free energy of solvation -4.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds