Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46622 * 2 1 4 4 C 1.52997 * 109.47106 * 120.00137 * 2 1 3 5 5 N 1.46493 * 109.47209 * 64.99862 * 4 2 1 6 6 C 1.46501 * 120.00429 * 269.99986 * 5 4 2 7 7 C 1.50703 * 109.47154 * 270.00304 * 6 5 4 8 8 H 1.08000 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00080 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99639 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99988 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.46788 * 119.99772 * 11 9 7 14 14 H 1.48499 * 109.46998 * 239.99571 * 11 9 7 15 15 C 1.39173 * 119.99900 * 90.00204 * 5 4 2 16 16 C 1.39529 * 120.85844 * 359.97438 * 15 5 4 17 17 C 1.37838 * 119.10144 * 180.02562 * 16 15 5 18 18 N 1.32030 * 120.86124 * 0.02562 * 17 16 15 19 19 C 1.32081 * 121.89017 * 359.69223 * 18 17 16 20 20 Cl 1.73598 * 119.59870 * 180.28623 * 19 18 17 21 21 C 1.38085 * 120.80600 * 0.57964 * 19 18 17 22 22 H 1.08999 * 109.47036 * 60.00274 * 1 2 3 23 23 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47004 * 300.00243 * 1 2 3 25 25 H 1.08994 * 109.47004 * 239.99757 * 2 1 3 26 26 H 1.09006 * 109.46379 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47191 * 299.99630 * 3 2 1 28 28 H 1.08999 * 109.47538 * 60.00612 * 3 2 1 29 29 H 1.09004 * 109.46970 * 304.99943 * 4 2 1 30 30 H 1.08995 * 109.47484 * 185.00528 * 4 2 1 31 31 H 1.09002 * 109.47166 * 30.00134 * 6 5 4 32 32 H 1.09000 * 109.47509 * 150.00349 * 6 5 4 33 33 H 0.97001 * 120.00034 * 179.97438 * 10 9 7 34 34 H 1.07997 * 120.45061 * 359.97438 * 16 15 5 35 35 H 1.07996 * 119.57528 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.47450 * 179.73596 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3747 -2.5659 1.7612 7 6 0.5717 -2.9408 3.2075 8 1 1.5510 -2.8645 3.6565 9 6 -0.4982 -3.3813 3.9575 10 7 -1.6907 -3.4738 3.4108 11 14 -0.2538 -3.8466 5.7500 12 1 1.1713 -3.6554 6.1212 13 1 -1.1086 -2.9852 6.6060 14 1 -0.6297 -5.2696 5.9477 15 6 2.4983 -3.0623 0.5927 16 6 3.7192 -2.6695 0.0431 17 6 4.5285 -3.6204 -0.5407 18 7 4.1614 -4.8879 -0.5843 19 6 3.0167 -5.3008 -0.0708 20 17 2.5966 -6.9831 -0.1546 21 6 2.1472 -4.4098 0.5265 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 3.1263 -0.6443 1.2952 31 1 -0.3484 -1.7532 1.6918 32 1 0.0044 -3.4298 1.2092 33 1 -2.4434 -3.7840 3.9382 34 1 4.0255 -1.6344 0.0739 35 1 5.4749 -3.3247 -0.9688 36 1 1.2106 -4.7526 0.9409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227686789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = 16.826505 kcal Electronic energy + Delta-G solvation = -18503.395561 eV Core-core repulsion = 15626.871693 eV Total energy + Delta-G solvation = -2876.523868 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80604 -37.46574 -36.08086 -34.41443 -32.82003 -30.57020 -30.28194 -27.81511 -26.89003 -25.35145 -23.45999 -22.43687 -20.84804 -19.80073 -17.15174 -16.61719 -16.28332 -15.40400 -14.82127 -14.51195 -14.33284 -14.22235 -13.73629 -13.54887 -13.34556 -12.58934 -12.39330 -12.06260 -11.75854 -11.67444 -11.50480 -11.19144 -11.05339 -10.98052 -10.84674 -10.73590 -10.48185 -10.33924 -10.16542 -10.06002 -9.38334 -9.07710 -8.59079 -8.49183 -6.97084 -6.17682 -4.27496 1.54545 2.03693 2.32380 3.20378 3.29342 3.33088 3.80048 4.26846 4.33581 5.00484 5.05105 5.12313 5.13855 5.26155 5.47598 5.60599 5.63901 5.69789 5.79749 5.84958 6.05053 6.07460 6.11801 6.17116 6.25244 6.27291 6.50848 6.61167 6.62331 6.84134 7.05633 7.17394 7.68965 7.95977 8.04460 8.13977 8.36269 8.79814 9.39842 10.86025 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.008836 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.299129 B = 3168.199262 C = 5113.638193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.126 3.874 5 N -0.587 5.587 6 C 0.241 3.759 7 C -0.536 4.536 8 H 0.060 0.940 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.895 3.105 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.281 3.719 16 C -0.270 4.270 17 C 0.147 3.853 18 N -0.543 5.543 19 C 0.210 3.790 20 Cl -0.052 7.052 21 C -0.221 4.221 22 H 0.045 0.955 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.130 0.870 35 H 0.152 0.848 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.965 5.073 -6.866 11.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C 0.002 3.998 5 N -0.290 5.290 6 C 0.121 3.879 7 C -0.575 4.575 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.723 3.277 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.207 1.207 15 C 0.163 3.837 16 C -0.296 4.296 17 C -0.009 4.009 18 N -0.260 5.260 19 C 0.048 3.952 20 Cl -0.024 7.024 21 C -0.248 4.248 22 H 0.064 0.936 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.148 0.852 35 H 0.169 0.831 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.091 4.425 -7.092 10.961 hybrid contribution -0.594 0.165 1.479 1.602 sum 6.497 4.590 -5.613 9.736 Atomic orbital electron populations 1.21921 0.94723 1.02891 1.00945 1.21583 0.96944 0.95764 0.99134 1.21773 1.00578 0.96010 1.01728 1.21495 0.99290 0.81293 0.97742 1.47217 1.20278 1.04528 1.56931 1.19563 0.78649 0.96465 0.93177 1.21547 0.95372 1.45012 0.95577 0.92163 1.24933 0.94963 0.95185 0.98740 1.69924 0.99837 1.46436 1.36755 0.86474 0.78352 0.78338 0.84540 1.19709 1.20889 1.20732 1.17963 0.88957 0.89097 0.87643 1.21587 0.96599 1.01447 1.10013 1.22066 0.97960 0.86662 0.94188 1.66919 1.17306 1.18475 1.23285 1.21135 0.91687 0.86136 0.96252 1.98359 1.91975 1.15089 1.96985 1.21414 1.03539 0.91669 1.08168 0.93619 0.91411 0.92619 0.91346 0.92910 0.92818 0.92582 0.90056 0.91591 0.93678 0.94640 0.92557 0.85186 0.83119 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.18 37.16 0.30 -1.87 16 2 C -0.11 -1.54 3.13 -90.62 -0.28 -1.83 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C 0.13 1.97 4.68 -4.05 -0.02 1.95 16 5 N -0.59 -11.24 2.40 -172.93 -0.42 -11.65 16 6 C 0.24 5.53 4.01 -5.19 -0.02 5.51 16 7 C -0.54 -13.85 9.39 -34.44 -0.32 -14.18 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 11 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.28 5.29 6.58 -83.61 -0.55 4.74 16 16 C -0.27 -4.28 9.26 -39.25 -0.36 -4.64 16 17 C 0.15 2.27 11.17 -17.61 -0.20 2.08 16 18 N -0.54 -9.82 10.34 -10.46 -0.11 -9.93 16 19 C 0.21 3.96 7.27 -17.50 -0.13 3.83 16 20 Cl -0.05 -0.90 29.10 -51.86 -1.51 -2.41 16 21 C -0.22 -4.41 9.03 -39.21 -0.35 -4.77 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.07 1.17 5.89 -51.93 -0.31 0.86 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.07 0.92 6.26 -51.93 -0.33 0.60 16 31 H 0.05 1.07 5.98 -51.93 -0.31 0.76 16 32 H 0.04 0.88 6.26 -51.93 -0.32 0.56 16 33 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.13 1.74 6.28 -52.49 -0.33 1.41 16 35 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.15 3.26 6.27 -52.49 -0.33 2.93 16 LS Contribution 311.38 15.07 4.69 4.69 Total: -1.00 -27.42 311.38 -8.16 -35.58 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -4.85 Total: 0.52 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -1.69 Total: -8.75 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.21 Total: -45.37 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.51 Total: -2.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.42 -8.16 -35.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227686789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.404 kcal (2) G-P(sol) polarization free energy of solvation -27.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds