Wall clock time and date at job start Mon Mar 30 2020 06:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46622 * 2 1 4 4 C 1.52997 * 109.47106 * 120.00137 * 2 1 3 5 5 N 1.46493 * 109.47209 * 64.99862 * 4 2 1 6 6 C 1.46501 * 120.00429 * 269.99986 * 5 4 2 7 7 C 1.50703 * 109.47154 * 270.00304 * 6 5 4 8 8 H 1.08000 * 120.00002 * 359.97438 * 7 6 5 9 9 C 1.37884 * 120.00080 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99639 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99988 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47211 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.46788 * 119.99772 * 11 9 7 14 14 H 1.48499 * 109.46998 * 239.99571 * 11 9 7 15 15 C 1.39173 * 119.99900 * 90.00204 * 5 4 2 16 16 C 1.39529 * 120.85844 * 359.97438 * 15 5 4 17 17 C 1.37838 * 119.10144 * 180.02562 * 16 15 5 18 18 N 1.32030 * 120.86124 * 0.02562 * 17 16 15 19 19 C 1.32081 * 121.89017 * 359.69223 * 18 17 16 20 20 Cl 1.73598 * 119.59870 * 180.28623 * 19 18 17 21 21 C 1.38085 * 120.80600 * 0.57964 * 19 18 17 22 22 H 1.08999 * 109.47036 * 60.00274 * 1 2 3 23 23 H 1.09001 * 109.46570 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47004 * 300.00243 * 1 2 3 25 25 H 1.08994 * 109.47004 * 239.99757 * 2 1 3 26 26 H 1.09006 * 109.46379 * 179.97438 * 3 2 1 27 27 H 1.08999 * 109.47191 * 299.99630 * 3 2 1 28 28 H 1.08999 * 109.47538 * 60.00612 * 3 2 1 29 29 H 1.09004 * 109.46970 * 304.99943 * 4 2 1 30 30 H 1.08995 * 109.47484 * 185.00528 * 4 2 1 31 31 H 1.09002 * 109.47166 * 30.00134 * 6 5 4 32 32 H 1.09000 * 109.47509 * 150.00349 * 6 5 4 33 33 H 0.97001 * 120.00034 * 179.97438 * 10 9 7 34 34 H 1.07997 * 120.45061 * 359.97438 * 16 15 5 35 35 H 1.07996 * 119.57528 * 179.97438 * 17 16 15 36 36 H 1.08002 * 120.47450 * 179.73596 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 0.3747 -2.5659 1.7612 7 6 0.5717 -2.9408 3.2075 8 1 1.5510 -2.8645 3.6565 9 6 -0.4982 -3.3813 3.9575 10 7 -1.6907 -3.4738 3.4108 11 14 -0.2538 -3.8466 5.7500 12 1 1.1713 -3.6554 6.1212 13 1 -1.1086 -2.9852 6.6060 14 1 -0.6297 -5.2696 5.9477 15 6 2.4983 -3.0623 0.5927 16 6 3.7192 -2.6695 0.0431 17 6 4.5285 -3.6204 -0.5407 18 7 4.1614 -4.8879 -0.5843 19 6 3.0167 -5.3008 -0.0708 20 17 2.5966 -6.9831 -0.1546 21 6 2.1472 -4.4098 0.5265 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6054 -0.2617 2.1369 30 1 3.1263 -0.6443 1.2952 31 1 -0.3484 -1.7532 1.6918 32 1 0.0044 -3.4298 1.2092 33 1 -2.4434 -3.7840 3.9382 34 1 4.0255 -1.6344 0.0739 35 1 5.4749 -3.3247 -0.9688 36 1 1.2106 -4.7526 0.9409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227686789.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:17 Heat of formation + Delta-G solvation = 2.746527 kcal Electronic energy + Delta-G solvation = -18504.006115 eV Core-core repulsion = 15626.871693 eV Total energy + Delta-G solvation = -2877.134422 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19956 -38.82232 -37.47387 -35.77509 -34.69149 -31.98771 -31.75712 -29.45599 -27.98515 -26.80790 -25.11937 -23.87632 -22.29381 -20.98862 -18.74146 -18.44501 -17.72108 -16.74866 -16.58366 -15.88202 -15.70792 -15.59511 -15.08107 -14.89535 -14.75550 -14.26020 -13.62637 -13.37574 -13.22743 -13.02839 -12.87621 -12.82294 -12.64053 -12.42879 -12.30326 -12.20841 -11.97700 -11.76236 -11.55495 -11.51064 -11.09716 -10.62989 -10.47011 -9.86569 -8.57607 -8.10745 -6.37412 0.16448 0.62921 0.91693 1.34739 1.38270 1.48266 2.27444 2.44147 2.91198 3.06609 3.75923 3.90682 4.03927 4.12336 4.17106 4.23656 4.37093 4.53506 4.68154 4.78717 4.81717 4.84610 4.94802 5.04479 5.05965 5.10160 5.15717 5.24307 5.30580 5.47201 5.51051 5.64664 5.66925 6.04833 6.33142 6.66790 6.78593 7.00459 7.33608 8.81923 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.010857 B = 0.008836 C = 0.005474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.299129 B = 3168.199262 C = 5113.638193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.136 4.136 4 C 0.123 3.877 5 N -0.594 5.594 6 C 0.261 3.739 7 C -0.542 4.542 8 H 0.050 0.950 9 C 0.018 3.982 10 N -0.922 5.922 11 Si 0.954 3.046 12 H -0.270 1.270 13 H -0.275 1.275 14 H -0.281 1.281 15 C 0.263 3.737 16 C -0.255 4.255 17 C 0.153 3.847 18 N -0.553 5.553 19 C 0.203 3.797 20 Cl -0.047 7.047 21 C -0.246 4.246 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.007 0.993 33 H 0.267 0.733 34 H 0.164 0.836 35 H 0.199 0.801 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.310 6.543 -7.317 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 C -0.194 4.194 4 C 0.000 4.000 5 N -0.297 5.297 6 C 0.139 3.861 7 C -0.581 4.581 8 H 0.069 0.931 9 C -0.182 4.182 10 N -0.561 5.561 11 Si 0.779 3.221 12 H -0.195 1.195 13 H -0.200 1.200 14 H -0.207 1.207 15 C 0.147 3.853 16 C -0.281 4.281 17 C -0.002 4.002 18 N -0.270 5.270 19 C 0.041 3.959 20 Cl -0.019 7.019 21 C -0.273 4.273 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.181 0.819 35 H 0.216 0.784 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.462 5.912 -7.556 13.475 hybrid contribution -1.278 -0.301 1.555 2.035 sum 8.185 5.611 -6.001 11.596 Atomic orbital electron populations 1.21882 0.96157 1.00797 1.01475 1.21509 0.95634 0.97527 0.97845 1.21726 1.01736 0.93594 1.02355 1.21715 1.00678 0.79282 0.98317 1.47062 1.19204 1.06082 1.57382 1.19026 0.80500 0.94851 0.91675 1.21786 0.94783 1.44570 0.96976 0.93144 1.25668 0.94797 0.95288 1.02467 1.70021 1.00511 1.47444 1.38148 0.85565 0.78290 0.77963 0.80237 1.19486 1.20018 1.20701 1.18252 0.90164 0.88549 0.88338 1.21906 0.94734 1.03220 1.08214 1.22866 0.99150 0.85450 0.92727 1.67045 1.16617 1.20017 1.23343 1.21191 0.91948 0.86415 0.96330 1.98351 1.92054 1.14545 1.96943 1.21280 1.03058 0.93032 1.09958 0.91739 0.94781 0.93397 0.91258 0.91002 0.91597 0.92611 0.91538 0.89077 0.94879 0.97478 0.92443 0.81891 0.78446 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.27 8.18 71.99 0.59 -3.68 16 2 C -0.11 -2.65 3.13 -10.79 -0.03 -2.68 16 3 C -0.14 -2.48 9.19 71.98 0.66 -1.82 16 4 C 0.12 3.67 4.68 86.38 0.40 4.08 16 5 N -0.59 -22.92 2.40 -701.04 -1.68 -24.60 16 6 C 0.26 12.56 4.01 85.63 0.34 12.90 16 7 C -0.54 -28.87 9.39 25.60 0.24 -28.63 16 8 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 9 C 0.02 0.96 5.46 84.66 0.46 1.42 16 10 N -0.92 -52.33 13.29 21.45 0.28 -52.05 16 11 Si 0.95 43.15 29.54 68.60 2.03 45.18 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 C 0.26 9.80 6.58 38.57 0.25 10.05 16 16 C -0.26 -7.28 9.26 22.49 0.21 -7.07 16 17 C 0.15 4.17 11.17 84.57 0.94 5.11 16 18 N -0.55 -18.92 10.34 -187.01 -1.93 -20.85 16 19 C 0.20 7.66 7.27 84.62 0.61 8.27 16 20 Cl -0.05 -1.65 29.10 -2.72 -0.08 -1.73 16 21 C -0.25 -10.10 9.03 22.51 0.20 -9.89 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.03 1.21 5.89 -2.39 -0.01 1.20 16 24 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 30 H 0.09 2.25 6.26 -2.39 -0.01 2.23 16 31 H 0.03 1.67 5.98 -2.39 -0.01 1.65 16 32 H 0.01 0.39 6.26 -2.39 -0.01 0.37 16 33 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.16 3.53 6.28 -2.91 -0.02 3.52 16 35 H 0.20 3.49 8.06 -2.91 -0.02 3.47 16 36 H 0.12 5.57 6.27 -2.91 -0.02 5.55 16 Total: -1.00 -60.85 311.38 4.58 -56.27 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 1.07 Total: 9.72 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 4.89 Total: -11.95 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -3.33 Total: -97.50 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -60.85 4.58 -56.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227686789.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.019 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds