Wall clock time and date at job start Mon Mar 30 2020 07:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47007 * 269.99574 * 3 2 1 5 5 H 1.48491 * 109.47128 * 29.99693 * 3 2 1 6 6 H 1.48498 * 109.47016 * 149.99819 * 3 2 1 7 7 C 1.37879 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99389 * 359.72222 * 7 2 1 9 9 C 1.50698 * 120.00625 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.46797 * 59.71581 * 9 7 2 11 11 O 1.42907 * 109.46742 * 299.72561 * 9 7 2 12 12 C 1.52991 * 109.47400 * 179.72532 * 9 7 2 13 13 C 1.50700 * 109.47654 * 66.21585 * 12 9 7 14 14 C 1.38232 * 119.99905 * 247.74992 * 13 12 9 15 15 C 1.38241 * 119.99808 * 179.76304 * 14 13 12 16 16 C 1.38233 * 119.99893 * 0.50285 * 15 14 13 17 17 C 1.38242 * 120.00175 * 359.74281 * 16 15 14 18 18 C 1.38236 * 119.99971 * 0.02562 * 17 16 15 19 19 C 1.50698 * 109.47068 * 186.21787 * 12 9 7 20 20 C 1.38244 * 120.00024 * 311.97004 * 19 12 9 21 21 C 1.38234 * 120.00202 * 179.76746 * 20 19 12 22 22 C 1.38240 * 119.99792 * 0.51018 * 21 20 19 23 23 C 1.38240 * 119.99866 * 359.74038 * 22 21 20 24 24 C 1.38229 * 120.00419 * 132.24564 * 19 12 9 25 25 H 0.97006 * 119.99898 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99919 * 308.84557 * 11 9 7 27 27 H 1.08998 * 109.47150 * 306.21306 * 12 9 7 28 28 H 1.07994 * 120.00507 * 359.97438 * 14 13 12 29 29 H 1.07992 * 119.99891 * 180.22331 * 15 14 13 30 30 H 1.08000 * 120.00509 * 179.72598 * 16 15 14 31 31 H 1.08001 * 120.00354 * 179.97438 * 17 16 15 32 32 H 1.07989 * 120.00417 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.99460 * 359.97438 * 20 19 12 34 34 H 1.07995 * 120.00303 * 180.23045 * 21 20 19 35 35 H 1.07999 * 120.00043 * 179.72784 * 22 21 20 36 36 H 1.07998 * 119.99590 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.99930 * 359.97438 * 24 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0055 9 6 3.5115 -1.1942 0.0011 10 1 3.8745 -0.6758 0.8886 11 8 3.9883 -0.5264 -1.1689 12 6 4.0214 -2.6366 0.0086 13 6 3.6492 -3.3078 -1.2883 14 6 2.7222 -4.3332 -1.2947 15 6 2.3771 -4.9457 -2.4850 16 6 2.9667 -4.5396 -3.6675 17 6 3.8975 -3.5175 -3.6605 18 6 4.2391 -2.9019 -2.4709 19 6 5.5205 -2.6386 0.1630 20 6 6.2978 -1.8116 -0.6262 21 6 7.6725 -1.8100 -0.4812 22 6 8.2708 -2.6430 0.4457 23 6 7.4938 -3.4738 1.2313 24 6 6.1187 -3.4716 1.0899 25 1 -0.4850 0.8401 -0.0004 26 1 3.5973 -0.8486 -1.9925 27 1 3.5698 -3.1773 0.8402 28 1 2.2651 -4.6537 -0.3702 29 1 1.6503 -5.7443 -2.4904 30 1 2.7005 -5.0210 -4.5969 31 1 4.3585 -3.2005 -4.5843 32 1 4.9665 -2.1038 -2.4653 33 1 5.8308 -1.1644 -1.3538 34 1 8.2795 -1.1612 -1.0952 35 1 9.3451 -2.6449 0.5560 36 1 7.9612 -4.1248 1.9552 37 1 5.5117 -4.1206 1.7038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228517042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:23 Heat of formation + Delta-G solvation = 2.332709 kcal Electronic energy + Delta-G solvation = -20362.537543 eV Core-core repulsion = 17455.525274 eV Total energy + Delta-G solvation = -2907.012268 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.88765 -38.17822 -36.27258 -32.88072 -32.33392 -30.68796 -30.32787 -29.75252 -28.24467 -25.26811 -22.65446 -21.84302 -21.72523 -21.41827 -19.63100 -17.53771 -16.31394 -16.30117 -15.27716 -15.12457 -14.77639 -14.68651 -14.12942 -13.81476 -13.64111 -13.25462 -13.05185 -12.75001 -12.47449 -12.15424 -12.03323 -11.82239 -11.56249 -11.17006 -10.95627 -10.78042 -10.54348 -10.43692 -10.22937 -9.82213 -9.18995 -8.77053 -8.67851 -8.52968 -8.40918 -8.16547 -7.98629 -6.15159 -4.26349 1.71258 1.78029 1.91000 1.94571 3.41831 3.45851 3.58036 4.16503 4.31727 4.46385 5.09557 5.15551 5.23748 5.32028 5.36035 5.40176 5.46728 5.49041 5.61306 5.73137 5.88116 5.98773 6.04545 6.08465 6.15019 6.29620 6.34317 6.50444 6.53994 6.63378 6.80321 6.88859 6.94446 6.97738 7.10198 7.22438 7.29804 7.38812 7.52456 7.55888 8.23770 8.77606 8.93272 9.46984 10.95026 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.009205 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.766913 B = 3041.223670 C = 4260.588431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.082 3.918 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.206 3.794 10 H 0.066 0.934 11 O -0.585 6.585 12 C -0.035 4.035 13 C -0.032 4.032 14 C -0.108 4.108 15 C -0.120 4.120 16 C -0.137 4.137 17 C -0.123 4.123 18 C -0.131 4.131 19 C -0.060 4.060 20 C -0.111 4.111 21 C -0.129 4.129 22 C -0.135 4.135 23 C -0.129 4.129 24 C -0.121 4.121 25 H 0.265 0.735 26 H 0.364 0.636 27 H 0.085 0.915 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.152 0.848 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.474 -7.514 -3.076 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.123 4.123 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.234 1.234 6 H -0.191 1.191 7 C -0.594 4.594 8 H 0.096 0.904 9 C 0.149 3.851 10 H 0.084 0.916 11 O -0.394 6.394 12 C -0.054 4.054 13 C -0.032 4.032 14 C -0.126 4.126 15 C -0.138 4.138 16 C -0.155 4.155 17 C -0.141 4.141 18 C -0.148 4.148 19 C -0.060 4.060 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.140 4.140 25 H 0.075 0.925 26 H 0.214 0.786 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.662 -7.099 -2.630 13.904 hybrid contribution -0.132 0.509 -0.297 0.604 sum 11.530 -6.590 -2.927 13.599 Atomic orbital electron populations 1.69950 1.06589 1.27392 1.48732 1.25017 0.94693 0.99774 0.92788 0.86344 0.79392 0.81989 0.78567 1.20434 1.23366 1.19117 1.21516 0.89373 0.95035 1.53491 0.90373 1.19898 0.94048 0.85749 0.85447 0.91639 1.86316 1.69570 1.65588 1.17928 1.19914 0.90051 1.00327 0.95118 1.19559 0.94979 0.94132 0.94501 1.21008 0.97344 0.96237 0.98010 1.21014 0.99786 1.00198 0.92834 1.20974 0.98372 0.98533 0.97613 1.21045 0.98429 0.96890 0.97699 1.21382 1.00922 1.00398 0.92106 1.20001 0.95515 0.95253 0.95230 1.21835 0.93092 0.98155 0.99718 1.21170 0.95231 0.99343 0.98947 1.21027 0.99133 0.97722 0.97410 1.20991 0.93912 0.99829 0.99941 1.21082 0.94655 0.99262 0.98956 0.92546 0.78610 0.89629 0.86480 0.86814 0.87023 0.86796 0.84932 0.83128 0.86735 0.87013 0.86839 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 3 Si 0.91 22.70 26.19 -169.99 -4.45 18.24 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.31 -7.68 7.11 56.52 0.40 -7.28 16 6 H -0.27 -6.60 6.53 56.52 0.37 -6.23 16 7 C -0.56 -14.83 8.77 -34.44 -0.30 -15.13 16 8 H 0.08 2.24 7.68 -52.48 -0.40 1.84 16 9 C 0.21 4.63 1.90 -27.89 -0.05 4.58 16 10 H 0.07 1.58 7.18 -51.93 -0.37 1.20 16 11 O -0.58 -12.59 7.36 -35.23 -0.26 -12.85 16 12 C -0.04 -0.68 2.17 -92.93 -0.20 -0.88 16 13 C -0.03 -0.58 4.08 -104.62 -0.43 -1.01 16 14 C -0.11 -1.91 9.46 -39.58 -0.37 -2.29 16 15 C -0.12 -1.91 10.05 -39.58 -0.40 -2.31 16 16 C -0.14 -2.05 10.05 -39.58 -0.40 -2.45 16 17 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 18 C -0.13 -2.21 6.89 -39.58 -0.27 -2.48 16 19 C -0.06 -1.05 4.69 -104.62 -0.49 -1.54 16 20 C -0.11 -1.87 7.60 -39.58 -0.30 -2.17 16 21 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 22 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 24 C -0.12 -1.90 9.67 -39.59 -0.38 -2.29 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.36 7.51 6.26 45.56 0.29 7.80 16 27 H 0.09 1.63 7.68 -51.93 -0.40 1.24 16 28 H 0.12 1.99 7.96 -52.49 -0.42 1.57 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.13 2.16 4.15 -52.49 -0.22 1.94 16 33 H 0.15 2.61 4.01 -52.49 -0.21 2.40 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.64 7.98 -52.48 -0.42 1.22 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -30.00 298.80 -8.58 -38.58 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -3.86 Total: 12.08 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -5.29 Total: -34.76 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.77 Total: -25.80 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.26 Total: -12.85 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.45 Total: 18.24 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.00 -8.58 -38.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228517042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.916 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds