Wall clock time and date at job start Mon Mar 30 2020 07:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48501 * 109.47007 * 269.99574 * 3 2 1 5 5 H 1.48491 * 109.47128 * 29.99693 * 3 2 1 6 6 H 1.48498 * 109.47016 * 149.99819 * 3 2 1 7 7 C 1.37879 * 120.00137 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99389 * 359.72222 * 7 2 1 9 9 C 1.50698 * 120.00625 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.46797 * 59.71581 * 9 7 2 11 11 O 1.42907 * 109.46742 * 299.72561 * 9 7 2 12 12 C 1.52991 * 109.47400 * 179.72532 * 9 7 2 13 13 C 1.50700 * 109.47654 * 66.21585 * 12 9 7 14 14 C 1.38232 * 119.99905 * 247.74992 * 13 12 9 15 15 C 1.38241 * 119.99808 * 179.76304 * 14 13 12 16 16 C 1.38233 * 119.99893 * 0.50285 * 15 14 13 17 17 C 1.38242 * 120.00175 * 359.74281 * 16 15 14 18 18 C 1.38236 * 119.99971 * 0.02562 * 17 16 15 19 19 C 1.50698 * 109.47068 * 186.21787 * 12 9 7 20 20 C 1.38244 * 120.00024 * 311.97004 * 19 12 9 21 21 C 1.38234 * 120.00202 * 179.76746 * 20 19 12 22 22 C 1.38240 * 119.99792 * 0.51018 * 21 20 19 23 23 C 1.38240 * 119.99866 * 359.74038 * 22 21 20 24 24 C 1.38229 * 120.00419 * 132.24564 * 19 12 9 25 25 H 0.97006 * 119.99898 * 0.02562 * 1 2 3 26 26 H 0.96698 * 113.99919 * 308.84557 * 11 9 7 27 27 H 1.08998 * 109.47150 * 306.21306 * 12 9 7 28 28 H 1.07994 * 120.00507 * 359.97438 * 14 13 12 29 29 H 1.07992 * 119.99891 * 180.22331 * 15 14 13 30 30 H 1.08000 * 120.00509 * 179.72598 * 16 15 14 31 31 H 1.08001 * 120.00354 * 179.97438 * 17 16 15 32 32 H 1.07989 * 120.00417 * 179.97438 * 18 17 16 33 33 H 1.07999 * 119.99460 * 359.97438 * 20 19 12 34 34 H 1.07995 * 120.00303 * 180.23045 * 21 20 19 35 35 H 1.07999 * 120.00043 * 179.72784 * 22 21 20 36 36 H 1.07998 * 119.99590 * 179.97438 * 23 22 21 37 37 H 1.08007 * 119.99930 * 359.97438 * 24 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1294 0.0055 9 6 3.5115 -1.1942 0.0011 10 1 3.8745 -0.6758 0.8886 11 8 3.9883 -0.5264 -1.1689 12 6 4.0214 -2.6366 0.0086 13 6 3.6492 -3.3078 -1.2883 14 6 2.7222 -4.3332 -1.2947 15 6 2.3771 -4.9457 -2.4850 16 6 2.9667 -4.5396 -3.6675 17 6 3.8975 -3.5175 -3.6605 18 6 4.2391 -2.9019 -2.4709 19 6 5.5205 -2.6386 0.1630 20 6 6.2978 -1.8116 -0.6262 21 6 7.6725 -1.8100 -0.4812 22 6 8.2708 -2.6430 0.4457 23 6 7.4938 -3.4738 1.2313 24 6 6.1187 -3.4716 1.0899 25 1 -0.4850 0.8401 -0.0004 26 1 3.5973 -0.8486 -1.9925 27 1 3.5698 -3.1773 0.8402 28 1 2.2651 -4.6537 -0.3702 29 1 1.6503 -5.7443 -2.4904 30 1 2.7005 -5.0210 -4.5969 31 1 4.3585 -3.2005 -4.5843 32 1 4.9665 -2.1038 -2.4653 33 1 5.8308 -1.1644 -1.3538 34 1 8.2795 -1.1612 -1.0952 35 1 9.3451 -2.6449 0.5560 36 1 7.9612 -4.1248 1.9552 37 1 5.5117 -4.1206 1.7038 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228517042.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:22 Heat of formation + Delta-G solvation = -14.098463 kcal Electronic energy + Delta-G solvation = -20363.250052 eV Core-core repulsion = 17455.525274 eV Total energy + Delta-G solvation = -2907.724777 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.23761 -39.36973 -37.88326 -34.47106 -34.30810 -31.91985 -31.52811 -30.96716 -29.98342 -26.94396 -23.91402 -23.43178 -22.94041 -22.70931 -21.07440 -19.46162 -17.59611 -17.53542 -17.04233 -16.65711 -16.40533 -15.92568 -15.42596 -15.27297 -15.15927 -14.86518 -14.45639 -14.05768 -14.01869 -13.53193 -13.34619 -13.29643 -13.11544 -12.77671 -12.63416 -12.37300 -11.96562 -11.75907 -11.72145 -11.54804 -11.00924 -10.86376 -10.46574 -9.71311 -9.65948 -9.43212 -9.35316 -8.34246 -6.47057 0.51022 0.59224 0.65777 0.69713 1.39973 1.41355 1.56535 2.36749 2.96210 2.99912 3.05137 3.75927 3.97108 4.05399 4.12315 4.20356 4.25664 4.30900 4.37023 4.45305 4.51260 4.70992 4.77575 4.81564 4.89465 4.91238 5.12391 5.25138 5.28837 5.31703 5.42866 5.50694 5.67316 5.70977 5.71091 5.75879 5.86137 5.97724 6.10516 6.24949 6.28395 6.65752 7.04220 7.29708 8.79629 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.013663 B = 0.009205 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.766913 B = 3041.223670 C = 4260.588431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.306 1.306 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.046 0.954 9 C 0.215 3.785 10 H 0.051 0.949 11 O -0.578 6.578 12 C -0.026 4.026 13 C -0.053 4.053 14 C -0.134 4.134 15 C -0.127 4.127 16 C -0.136 4.136 17 C -0.124 4.124 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.128 4.128 21 C -0.132 4.132 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.136 4.136 25 H 0.266 0.734 26 H 0.369 0.631 27 H 0.071 0.929 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.105 -7.783 -4.165 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.234 1.234 6 H -0.187 1.187 7 C -0.587 4.587 8 H 0.065 0.935 9 C 0.158 3.842 10 H 0.069 0.931 11 O -0.387 6.387 12 C -0.045 4.045 13 C -0.053 4.053 14 C -0.152 4.152 15 C -0.145 4.145 16 C -0.154 4.154 17 C -0.141 4.141 18 C -0.158 4.158 19 C -0.080 4.080 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.148 4.148 23 C -0.145 4.145 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.219 0.781 27 H 0.090 0.910 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.163 0.837 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.306 -7.379 -3.723 16.522 hybrid contribution -0.919 0.479 0.024 1.037 sum 13.387 -6.899 -3.699 15.508 Atomic orbital electron populations 1.70065 1.08106 1.28164 1.51109 1.25757 0.95248 1.02954 0.92940 0.85422 0.78181 0.78367 0.78711 1.19786 1.23403 1.18681 1.21773 0.91663 0.93547 1.51737 0.93548 1.19601 0.91239 0.88116 0.85241 0.93129 1.86272 1.69164 1.65540 1.17756 1.19636 0.91715 0.97654 0.95463 1.19609 0.96006 0.94970 0.94677 1.21161 0.98049 0.97206 0.98826 1.21336 1.00103 1.00503 0.92528 1.21396 0.97436 0.98078 0.98466 1.21442 0.98111 0.96398 0.98192 1.21509 1.01121 1.00885 0.92288 1.19893 0.94233 0.97022 0.96878 1.21805 0.94272 0.98494 0.99939 1.21468 0.94456 0.99720 0.99379 1.21445 1.00866 0.96396 0.96134 1.21354 0.93060 0.99883 1.00169 1.21266 0.95960 0.99340 0.98811 0.92473 0.78067 0.91038 0.87278 0.84672 0.83749 0.83801 0.84519 0.84103 0.84446 0.83685 0.83919 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.96 21.45 0.30 -57.19 16 2 C 0.03 1.78 5.47 84.66 0.46 2.24 16 3 Si 0.97 47.31 26.19 68.60 1.80 49.10 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.31 -14.91 7.11 99.48 0.71 -14.20 16 6 H -0.26 -12.57 6.53 99.48 0.65 -11.92 16 7 C -0.55 -30.30 8.77 25.60 0.22 -30.08 16 8 H 0.05 2.81 7.68 -2.91 -0.02 2.78 16 9 C 0.22 9.92 1.90 29.84 0.06 9.98 16 10 H 0.05 2.49 7.18 -2.39 -0.02 2.47 16 11 O -0.58 -24.79 7.36 -148.98 -1.10 -25.89 16 12 C -0.03 -1.02 2.17 -12.29 -0.03 -1.05 16 13 C -0.05 -1.97 4.08 -19.86 -0.08 -2.05 16 14 C -0.13 -4.90 9.46 22.27 0.21 -4.69 16 15 C -0.13 -3.93 10.05 22.27 0.22 -3.71 16 16 C -0.14 -3.77 10.05 22.27 0.22 -3.55 16 17 C -0.12 -3.54 10.05 22.27 0.22 -3.31 16 18 C -0.14 -4.68 6.89 22.27 0.15 -4.53 16 19 C -0.08 -2.79 4.69 -19.87 -0.09 -2.89 16 20 C -0.13 -4.17 7.60 22.27 0.17 -4.00 16 21 C -0.13 -3.56 10.05 22.27 0.22 -3.33 16 22 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 23 C -0.13 -3.19 10.05 22.27 0.22 -2.96 16 24 C -0.14 -4.14 9.67 22.27 0.22 -3.93 16 25 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 26 H 0.37 15.20 6.26 -74.06 -0.46 14.74 16 27 H 0.07 2.91 7.68 -2.39 -0.02 2.90 16 28 H 0.11 3.97 7.96 -2.91 -0.02 3.95 16 29 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 30 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 31 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.14 4.36 4.15 -2.92 -0.01 4.35 16 33 H 0.14 4.78 4.01 -2.91 -0.01 4.77 16 34 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 36 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.12 3.43 7.98 -2.91 -0.02 3.41 16 Total: -1.00 -65.56 298.80 4.19 -61.37 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.56 Total: 33.34 kcal Atomic # 6 Polarization: -63.38 SS G_CDS: 2.63 Total: -60.74 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.30 Total: -57.19 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -1.10 Total: -25.89 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.80 Total: 49.10 kcal Total: -65.56 4.19 -61.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228517042.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.271 kcal (2) G-P(sol) polarization free energy of solvation -65.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds