Wall clock time and date at job start Mon Mar 30 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 120.41990 * 2 1 4 4 N 1.31857 * 120.76094 * 179.97438 * 3 2 1 5 5 C 1.31883 * 121.72859 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76490 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.41856 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46882 * 269.98009 * 7 6 5 9 9 C 1.38856 * 119.99939 * 180.02562 * 8 7 6 10 10 C 1.39570 * 119.84142 * 359.72404 * 9 8 7 11 11 C 1.36341 * 120.15933 * 179.71858 * 10 9 8 12 12 C 1.40884 * 119.83717 * 0.55664 * 11 10 9 13 13 C 1.41133 * 120.15713 * 179.70150 * 12 11 10 14 14 H 1.08001 * 119.99949 * 204.62283 * 13 12 11 15 15 C 1.39864 * 120.00236 * 24.61596 * 13 12 11 16 16 N 1.30904 * 119.99895 * 17.97027 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 197.96648 * 15 13 12 18 18 H 1.48498 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46920 * 120.00140 * 17 15 13 20 20 H 1.48493 * 109.47538 * 240.00082 * 17 15 13 21 21 C 1.40889 * 119.68576 * 359.71468 * 12 11 10 22 22 C 1.36333 * 119.83822 * 0.02562 * 21 12 11 23 23 C 1.38632 * 120.42098 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47221 * 89.99583 * 1 2 3 25 25 H 1.08996 * 109.47447 * 210.00379 * 1 2 3 26 26 H 1.09005 * 109.47092 * 330.00188 * 1 2 3 27 27 H 1.07997 * 119.61776 * 359.95855 * 3 2 1 28 28 H 1.07996 * 119.61430 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47229 * 29.97341 * 7 6 5 30 30 H 1.08996 * 109.47300 * 149.98063 * 7 6 5 31 31 H 0.96995 * 120.00139 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.91815 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.08027 * 180.27097 * 11 10 9 34 34 H 0.97001 * 120.00420 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.07952 * 179.97438 * 21 12 11 36 36 H 1.08002 * 119.92094 * 179.97438 * 22 21 12 37 37 H 1.07999 * 120.78793 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4026 -2.4192 0.0012 8 7 4.6645 -2.8320 -1.3799 9 6 5.3959 -3.9848 -1.6332 10 6 5.8849 -4.7448 -0.5695 11 6 6.5989 -5.8810 -0.8106 12 6 6.8527 -6.2810 -2.1374 13 6 7.5965 -7.4525 -2.3948 14 1 8.1269 -7.5610 -3.3293 15 6 7.6468 -8.4729 -1.4396 16 7 6.7538 -8.5191 -0.4835 17 14 8.9881 -9.7700 -1.5282 18 1 9.8663 -9.4951 -2.6938 19 1 9.7948 -9.7338 -0.2819 20 1 8.3701 -11.1118 -1.6790 21 6 6.3608 -5.5058 -3.2061 22 6 5.6438 -4.3749 -2.9500 23 6 2.2089 -1.1955 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6675 2.1277 -0.0007 28 1 5.3046 0.1286 0.0014 29 1 5.3487 -2.2486 0.5149 30 1 3.8461 -3.2028 0.5152 31 1 4.3264 -2.3004 -2.1174 32 1 5.6937 -4.4342 0.4471 33 1 6.9730 -6.4704 0.0135 34 1 6.7889 -9.2265 0.1792 35 1 6.5520 -5.8063 -4.2257 36 1 5.2664 -3.7794 -3.7683 37 1 1.6888 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228684065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:54 Heat of formation + Delta-G solvation = 48.892786 kcal Electronic energy + Delta-G solvation = -18616.958640 eV Core-core repulsion = 15744.258119 eV Total energy + Delta-G solvation = -2872.700521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.42088 -37.95530 -35.44781 -33.75383 -33.41955 -31.77237 -29.47391 -28.67347 -27.49645 -26.12541 -23.98338 -23.17332 -21.68036 -20.72909 -19.86937 -17.21662 -17.10065 -16.72716 -16.31628 -15.17647 -14.95496 -14.38187 -14.11276 -13.79100 -13.43691 -13.25543 -13.15443 -12.96388 -12.73609 -12.59769 -12.50334 -12.00575 -11.70581 -11.51874 -11.15069 -11.04891 -10.83238 -10.47852 -9.81872 -9.69185 -9.55855 -9.31172 -9.24137 -8.97252 -8.55714 -7.50730 -6.65610 -6.41427 -4.04456 0.92594 1.13980 2.89569 3.09046 3.15248 3.20690 3.33805 3.59924 4.05145 4.27730 4.48162 4.59061 4.64685 4.75584 4.84081 4.89744 5.07334 5.31042 5.33894 5.52416 5.67764 5.79650 5.85647 5.89790 6.06012 6.25112 6.26633 6.30531 6.57915 6.89427 6.92698 7.19075 7.34723 7.52992 7.67734 7.81994 7.84241 8.14494 8.27039 8.46671 8.66996 8.78157 9.05330 9.13956 10.36341 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043729 B = 0.003194 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.148693 B = 8765.412915 C = 8861.255085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.142 4.142 3 C 0.094 3.906 4 N -0.484 5.484 5 C 0.107 3.893 6 C -0.139 4.139 7 C 0.182 3.818 8 N -0.757 5.757 9 C 0.089 3.911 10 C -0.163 4.163 11 C -0.125 4.125 12 C 0.075 3.925 13 C -0.466 4.466 14 H 0.073 0.927 15 C 0.074 3.926 16 N -0.807 5.807 17 Si 0.902 3.098 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.277 1.277 21 C -0.187 4.187 22 C -0.157 4.157 23 C -0.061 4.061 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.156 0.844 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.384 0.616 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.276 0.724 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.241 12.886 3.118 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.144 4.144 3 C -0.064 4.064 4 N -0.192 5.192 5 C -0.050 4.050 6 C -0.141 4.141 7 C 0.056 3.944 8 N -0.394 5.394 9 C -0.007 4.007 10 C -0.185 4.185 11 C -0.145 4.145 12 C 0.072 3.928 13 C -0.497 4.497 14 H 0.091 0.909 15 C -0.141 4.141 16 N -0.434 5.434 17 Si 0.727 3.273 18 H -0.186 1.186 19 H -0.200 1.200 20 H -0.203 1.203 21 C -0.207 4.207 22 C -0.179 4.179 23 C -0.088 4.088 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.170 0.830 28 H 0.174 0.826 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.217 0.783 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.834 13.504 3.516 16.516 hybrid contribution -0.072 -1.327 -0.230 1.348 sum -8.906 12.178 3.286 15.441 Atomic orbital electron populations 1.20715 0.90223 1.03071 1.02634 1.20948 0.97601 0.94147 1.01731 1.22664 0.90068 0.97367 0.96252 1.67709 1.08280 1.31265 1.11913 1.22743 1.00457 0.87027 0.94778 1.21106 0.94634 0.97013 1.01347 1.19830 0.97210 0.90865 0.86474 1.43828 1.63602 1.27916 1.04024 1.17328 1.00499 0.89466 0.93409 1.20091 1.05035 0.98062 0.95324 1.20934 1.00855 0.95044 0.97647 1.17507 0.91784 0.92572 0.90920 1.19403 1.27574 1.00273 1.02469 0.90890 1.25799 0.95230 0.98533 0.94512 1.69862 1.29678 1.30987 1.12916 0.86367 0.81645 0.80086 0.79173 1.18624 1.19956 1.20280 1.20545 1.04412 0.98150 0.97590 1.19799 1.05498 0.99517 0.93046 1.21501 0.93509 0.98355 0.95409 0.90894 0.91255 0.91249 0.83050 0.82628 0.92232 0.92391 0.78325 0.89385 0.86356 0.91374 0.89031 0.89636 0.84685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.04 36.00 0.36 -0.40 16 2 C -0.14 -1.42 5.90 -104.48 -0.62 -2.04 16 3 C 0.09 1.00 10.86 -17.54 -0.19 0.81 16 4 N -0.48 -6.22 10.36 -13.25 -0.14 -6.35 16 5 C 0.11 1.35 10.86 -17.55 -0.19 1.16 16 6 C -0.14 -1.74 5.27 -104.48 -0.55 -2.29 16 7 C 0.18 2.64 5.04 -5.19 -0.03 2.62 16 8 N -0.76 -13.00 5.69 -59.67 -0.34 -13.34 16 9 C 0.09 1.93 6.67 -83.69 -0.56 1.37 16 10 C -0.16 -3.77 9.23 -39.77 -0.37 -4.14 16 11 C -0.12 -3.25 8.64 -39.26 -0.34 -3.59 16 12 C 0.08 2.03 5.57 -106.80 -0.60 1.43 16 13 C -0.47 -12.65 9.03 -37.88 -0.34 -12.99 16 14 H 0.07 1.92 7.91 -52.49 -0.41 1.51 16 15 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 16 N -0.81 -21.34 10.96 55.54 0.61 -20.74 16 17 Si 0.90 19.19 29.60 -169.99 -5.03 14.16 16 18 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 21 C -0.19 -4.62 9.74 -39.27 -0.38 -5.01 16 22 C -0.16 -3.51 9.82 -39.77 -0.39 -3.90 16 23 C -0.06 -0.69 9.55 -39.28 -0.37 -1.07 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 26 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 27 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 28 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 30 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 31 H 0.38 6.12 8.46 -40.82 -0.35 5.78 16 32 H 0.09 1.84 6.68 -52.49 -0.35 1.49 16 33 H 0.12 3.20 6.16 -52.48 -0.32 2.88 16 34 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -29.00 317.16 -9.53 -38.54 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -4.76 Total: 9.17 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -4.65 Total: -26.21 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 0.13 Total: -40.43 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.00 -9.53 -38.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228684065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.432 kcal (2) G-P(sol) polarization free energy of solvation -29.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds