Wall clock time and date at job start Mon Mar 30 2020 07:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38233 * 120.41990 * 2 1 4 4 N 1.31857 * 120.76094 * 179.97438 * 3 2 1 5 5 C 1.31883 * 121.72859 * 0.02562 * 4 3 2 6 6 C 1.38180 * 120.76490 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.41856 * 180.02562 * 6 5 4 8 8 N 1.46504 * 109.46882 * 269.98009 * 7 6 5 9 9 C 1.38856 * 119.99939 * 180.02562 * 8 7 6 10 10 C 1.39570 * 119.84142 * 359.72404 * 9 8 7 11 11 C 1.36341 * 120.15933 * 179.71858 * 10 9 8 12 12 C 1.40884 * 119.83717 * 0.55664 * 11 10 9 13 13 C 1.41133 * 120.15713 * 179.70150 * 12 11 10 14 14 H 1.08001 * 119.99949 * 204.62283 * 13 12 11 15 15 C 1.39864 * 120.00236 * 24.61596 * 13 12 11 16 16 N 1.30904 * 119.99895 * 17.97027 * 15 13 12 17 17 Si 1.86800 * 120.00296 * 197.96648 * 15 13 12 18 18 H 1.48498 * 109.47179 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46920 * 120.00140 * 17 15 13 20 20 H 1.48493 * 109.47538 * 240.00082 * 17 15 13 21 21 C 1.40889 * 119.68576 * 359.71468 * 12 11 10 22 22 C 1.36333 * 119.83822 * 0.02562 * 21 12 11 23 23 C 1.38632 * 120.42098 * 179.97438 * 2 1 3 24 24 H 1.09004 * 109.47221 * 89.99583 * 1 2 3 25 25 H 1.08996 * 109.47447 * 210.00379 * 1 2 3 26 26 H 1.09005 * 109.47092 * 330.00188 * 1 2 3 27 27 H 1.07997 * 119.61776 * 359.95855 * 3 2 1 28 28 H 1.07996 * 119.61430 * 180.02562 * 5 4 3 29 29 H 1.09005 * 109.47229 * 29.97341 * 7 6 5 30 30 H 1.08996 * 109.47300 * 149.98063 * 7 6 5 31 31 H 0.96995 * 120.00139 * 359.97438 * 8 7 6 32 32 H 1.08001 * 119.91815 * 359.97438 * 10 9 8 33 33 H 1.08005 * 120.08027 * 180.27097 * 11 10 9 34 34 H 0.97001 * 120.00420 * 180.02562 * 16 15 13 35 35 H 1.08000 * 120.07952 * 179.97438 * 21 12 11 36 36 H 1.08002 * 119.92094 * 179.97438 * 22 21 12 37 37 H 1.07999 * 120.78793 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2257 0.0823 0.0005 6 6 3.5948 -1.1471 0.0005 7 6 4.4026 -2.4192 0.0012 8 7 4.6645 -2.8320 -1.3799 9 6 5.3959 -3.9848 -1.6332 10 6 5.8849 -4.7448 -0.5695 11 6 6.5989 -5.8810 -0.8106 12 6 6.8527 -6.2810 -2.1374 13 6 7.5965 -7.4525 -2.3948 14 1 8.1269 -7.5610 -3.3293 15 6 7.6468 -8.4729 -1.4396 16 7 6.7538 -8.5191 -0.4835 17 14 8.9881 -9.7700 -1.5282 18 1 9.8663 -9.4951 -2.6938 19 1 9.7948 -9.7338 -0.2819 20 1 8.3701 -11.1118 -1.6790 21 6 6.3608 -5.5058 -3.2061 22 6 5.6438 -4.3749 -2.9500 23 6 2.2089 -1.1955 0.0005 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.6675 2.1277 -0.0007 28 1 5.3046 0.1286 0.0014 29 1 5.3487 -2.2486 0.5149 30 1 3.8461 -3.2028 0.5152 31 1 4.3264 -2.3004 -2.1174 32 1 5.6937 -4.4342 0.4471 33 1 6.9730 -6.4704 0.0135 34 1 6.7889 -9.2265 0.1792 35 1 6.5520 -5.8063 -4.2257 36 1 5.2664 -3.7794 -3.7683 37 1 1.6888 -2.1420 0.0005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228684065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:54 Heat of formation + Delta-G solvation = 33.275051 kcal Electronic energy + Delta-G solvation = -18617.635876 eV Core-core repulsion = 15744.258119 eV Total energy + Delta-G solvation = -2873.377756 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31891 -39.71585 -36.97038 -35.10810 -34.52890 -33.13079 -31.34935 -30.36851 -28.19964 -27.52829 -25.66532 -24.13221 -23.13494 -22.24493 -21.45277 -19.15094 -18.05704 -17.82781 -17.61912 -16.82938 -16.53463 -15.66864 -15.28391 -15.01770 -14.72368 -14.48583 -14.41224 -14.10255 -14.01186 -13.74015 -13.60725 -13.49418 -13.15546 -13.11583 -12.74418 -12.58939 -12.35017 -12.21369 -11.57665 -11.21268 -11.08493 -10.67199 -10.46603 -10.29675 -9.82977 -9.40440 -8.55177 -8.18307 -6.00814 0.04368 0.26373 1.10238 1.18589 1.40916 1.54868 1.58228 2.27945 2.64170 2.84437 3.12075 3.45776 3.73314 3.80686 3.86876 4.01488 4.02761 4.26679 4.44456 4.47704 4.51314 4.68460 4.78435 4.83579 4.89394 5.03897 5.13169 5.18899 5.27565 5.27833 5.32107 5.45844 5.67592 5.74329 5.79595 5.95839 6.19308 6.38873 6.65802 6.85634 6.96187 7.08866 7.11298 7.28063 8.48444 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.043729 B = 0.003194 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.148693 B = 8765.412915 C = 8861.255085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.136 4.136 3 C 0.090 3.910 4 N -0.506 5.506 5 C 0.096 3.904 6 C -0.145 4.145 7 C 0.184 3.816 8 N -0.746 5.746 9 C 0.111 3.889 10 C -0.172 4.172 11 C -0.144 4.144 12 C 0.036 3.964 13 C -0.505 4.505 14 H 0.067 0.933 15 C 0.032 3.968 16 N -0.840 5.840 17 Si 0.976 3.024 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.268 1.268 21 C -0.196 4.196 22 C -0.164 4.164 23 C -0.069 4.069 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.180 0.820 28 H 0.159 0.841 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.394 0.606 32 H 0.108 0.892 33 H 0.100 0.900 34 H 0.282 0.718 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.646 14.280 3.230 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.138 4.138 3 C -0.067 4.067 4 N -0.214 5.214 5 C -0.060 4.060 6 C -0.148 4.148 7 C 0.059 3.941 8 N -0.382 5.382 9 C 0.012 3.988 10 C -0.194 4.194 11 C -0.164 4.164 12 C 0.033 3.967 13 C -0.536 4.536 14 H 0.085 0.915 15 C -0.180 4.180 16 N -0.468 5.468 17 Si 0.798 3.202 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.193 1.193 21 C -0.216 4.216 22 C -0.186 4.186 23 C -0.095 4.095 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.197 0.803 28 H 0.176 0.824 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.228 0.772 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -10.266 14.942 3.629 18.489 hybrid contribution 0.188 -1.533 -0.257 1.566 sum -10.078 13.409 3.372 17.109 Atomic orbital electron populations 1.20791 0.87833 1.04309 1.03548 1.21263 0.99255 0.93273 1.00035 1.23199 0.89560 0.98889 0.95047 1.67733 1.09518 1.31351 1.12768 1.22805 1.00807 0.87149 0.95270 1.20851 0.95015 0.95845 1.03042 1.19863 0.97665 0.91905 0.84705 1.43869 1.62145 1.26333 1.05815 1.17414 0.98776 0.89841 0.92751 1.20254 1.04792 0.97510 0.96890 1.20870 1.02336 0.96219 0.96947 1.17826 0.93348 0.93583 0.91918 1.19612 1.29220 1.01533 1.03258 0.91493 1.26601 0.97111 1.00421 0.93860 1.69918 1.31072 1.32138 1.13719 0.85259 0.78461 0.77285 0.79238 1.18516 1.19134 1.19349 1.20745 1.04595 0.98825 0.97434 1.20084 1.04992 0.99143 0.94408 1.21699 0.93123 0.99433 0.95244 0.89977 0.90712 0.89417 0.80330 0.82409 0.92177 0.92508 0.77212 0.87449 0.88234 0.90747 0.88575 0.86686 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.04 71.23 0.72 -0.40 16 2 C -0.14 -2.33 5.90 -19.77 -0.12 -2.45 16 3 C 0.09 1.68 10.86 84.69 0.92 2.60 16 4 N -0.51 -12.07 10.36 -195.84 -2.03 -14.10 16 5 C 0.10 2.30 10.86 84.67 0.92 3.22 16 6 C -0.15 -3.40 5.27 -19.78 -0.10 -3.50 16 7 C 0.18 5.05 5.04 85.63 0.43 5.48 16 8 N -0.75 -24.18 5.69 -342.70 -1.95 -26.14 16 9 C 0.11 4.66 6.67 38.67 0.26 4.92 16 10 C -0.17 -7.97 9.23 22.15 0.20 -7.76 16 11 C -0.14 -7.72 8.64 22.47 0.19 -7.52 16 12 C 0.04 2.01 5.57 -21.27 -0.12 1.89 16 13 C -0.50 -28.46 9.03 23.37 0.21 -28.25 16 14 H 0.07 3.68 7.91 -2.91 -0.02 3.66 16 15 C 0.03 1.69 5.13 85.22 0.44 2.13 16 16 N -0.84 -45.76 10.96 21.82 0.24 -45.52 16 17 Si 0.98 40.16 29.60 68.60 2.03 42.19 16 18 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 19 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 20 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 21 C -0.20 -9.82 9.74 22.47 0.22 -9.61 16 22 C -0.16 -7.19 9.82 22.14 0.22 -6.97 16 23 C -0.07 -1.40 9.55 22.47 0.21 -1.19 16 24 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 26 H 0.09 0.62 8.09 -2.38 -0.02 0.60 16 27 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 29 H 0.06 1.68 7.87 -2.38 -0.02 1.66 16 30 H 0.06 1.61 7.89 -2.39 -0.02 1.59 16 31 H 0.39 11.57 8.46 -92.71 -0.78 10.79 16 32 H 0.11 4.44 6.68 -2.91 -0.02 4.42 16 33 H 0.10 5.63 6.16 -2.91 -0.02 5.62 16 34 H 0.28 13.93 8.30 -92.71 -0.77 13.16 16 35 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -63.69 317.16 3.19 -60.50 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.29 Total: 30.49 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 4.60 Total: -47.42 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -3.74 Total: -85.76 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -63.69 3.19 -60.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228684065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.775 kcal (2) G-P(sol) polarization free energy of solvation -63.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds