Wall clock time and date at job start Mon Mar 30 2020 06:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46705 * 240.00409 * 2 1 3 5 5 C 1.50699 * 109.47335 * 59.99711 * 4 2 1 6 6 H 1.07997 * 119.99855 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46930 * 90.00752 * 9 7 5 11 11 H 1.48505 * 109.46823 * 210.00407 * 9 7 5 12 12 H 1.48500 * 109.47468 * 330.00291 * 9 7 5 13 13 C 1.52993 * 109.47233 * 120.00212 * 2 1 3 14 14 N 1.46500 * 109.47303 * 299.99820 * 13 2 1 15 15 C 1.39777 * 119.99930 * 180.02562 * 14 13 2 16 16 C 1.39218 * 120.49758 * 0.25872 * 15 14 13 17 17 C 1.38564 * 118.37368 * 180.28825 * 16 15 14 18 18 C 1.38217 * 119.26403 * 359.45403 * 17 16 15 19 19 N 1.31893 * 120.94000 * 0.28445 * 18 17 16 20 20 C 1.31886 * 121.78402 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 119.68838 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.46867 * 299.99763 * 1 2 3 23 23 H 1.08999 * 109.47119 * 59.99549 * 1 2 3 24 24 H 1.08996 * 109.46565 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46632 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47096 * 300.00464 * 3 2 1 27 27 H 1.09001 * 109.46664 * 60.00106 * 3 2 1 28 28 H 1.09001 * 109.46744 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.46695 * 299.99762 * 4 2 1 30 30 H 0.97000 * 120.00479 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47104 * 179.97438 * 13 2 1 32 32 H 1.09004 * 109.47156 * 60.00219 * 13 2 1 33 33 H 0.97005 * 119.99987 * 0.02562 * 14 13 2 34 34 H 1.07997 * 120.81927 * 0.02562 * 16 15 14 35 35 H 1.08002 * 120.37107 * 179.73852 * 17 16 15 36 36 H 1.08004 * 119.53124 * 180.25845 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 2.6271 -1.5507 -3.8528 9 14 1.2488 0.3996 -5.2572 10 1 2.2272 1.4412 -5.6608 11 1 1.0840 -0.5793 -6.3617 12 1 -0.0594 1.0371 -4.9615 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8900 -0.5080 3.7148 16 6 2.6946 -1.6356 3.8545 17 6 2.9975 -2.0740 5.1336 18 6 2.5049 -1.3774 6.2210 19 7 1.7493 -0.3090 6.0562 20 6 1.4326 0.1396 4.8571 21 17 0.4336 1.5510 4.7033 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7208 -1.2496 29 1 1.6766 -1.7488 -1.2493 30 1 2.8614 -1.8822 -4.7337 31 1 3.1301 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2491 33 1 0.9938 0.7578 2.3564 34 1 3.0699 -2.1583 2.9872 35 1 3.6154 -2.9477 5.2793 36 1 2.7418 -1.7129 7.2199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229678962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:47 Heat of formation + Delta-G solvation = 9.249371 kcal Electronic energy + Delta-G solvation = -18062.682646 eV Core-core repulsion = 15185.830208 eV Total energy + Delta-G solvation = -2876.852438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.26935 -37.86644 -36.56308 -34.82686 -32.44297 -31.85751 -29.48602 -27.06410 -26.56700 -26.18722 -23.64482 -23.15093 -21.86050 -18.58369 -17.47413 -17.08852 -16.41234 -16.16983 -14.90966 -14.65457 -14.61728 -14.11645 -14.04417 -13.50122 -13.03276 -12.70782 -12.60625 -12.31683 -12.12077 -11.72010 -11.39698 -11.27422 -11.07367 -10.89957 -10.73303 -10.50625 -10.47676 -10.31238 -9.89613 -9.69126 -9.45939 -9.26343 -9.00885 -8.42168 -7.49657 -6.06680 -4.07790 1.02113 1.35320 1.91872 3.27198 3.34402 3.35890 3.42135 3.72129 4.40413 4.59135 4.73037 5.00878 5.06332 5.29227 5.33502 5.35088 5.47227 5.67328 5.82951 5.99470 6.08082 6.08834 6.16929 6.29601 6.39374 6.57284 6.57355 6.94982 7.00064 7.01380 7.18733 7.53911 7.66155 7.66943 7.81151 7.91626 8.33815 8.96621 9.55937 11.04809 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.004192 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.286469 B = 6677.814864 C = 7306.730574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.071 4.071 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.126 3.874 14 N -0.722 5.722 15 C 0.199 3.801 16 C -0.152 4.152 17 C -0.114 4.114 18 C 0.038 3.962 19 N -0.439 5.439 20 C 0.088 3.912 21 Cl -0.044 7.044 22 H 0.029 0.971 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.029 0.971 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.405 0.595 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 0.642 15.908 15.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.071 4.071 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.003 3.997 14 N -0.349 5.349 15 C 0.088 3.912 16 C -0.183 4.183 17 C -0.135 4.135 18 C -0.122 4.122 19 N -0.149 5.149 20 C -0.083 4.083 21 Cl -0.016 7.016 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.048 0.952 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.244 0.756 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.716 1.004 16.273 16.320 hybrid contribution -0.235 0.349 -1.692 1.744 sum -0.951 1.353 14.581 14.675 Atomic orbital electron populations 1.21767 0.95148 1.01211 1.00417 1.20880 0.95614 0.95937 0.94683 1.21766 1.00509 0.95853 1.00415 1.19093 0.96270 0.95175 0.89496 1.21174 1.31267 1.12111 0.90487 0.92240 1.24994 0.95253 0.95040 0.99095 1.69949 1.36982 1.23014 1.23515 0.86647 0.79251 0.79443 0.82987 1.20730 1.21292 1.19904 1.21762 0.98455 0.96004 0.83480 1.45261 1.55311 1.32528 1.01808 1.18469 0.93613 0.93105 0.86040 1.21156 1.01412 0.96911 0.98862 1.21993 0.98854 1.00080 0.92526 1.22234 0.98131 0.92499 0.99304 1.66719 1.11399 1.12971 1.23823 1.20938 1.03324 0.94872 0.89135 1.98366 1.67685 1.38377 1.97165 0.95169 0.91328 0.93321 0.93320 0.91338 0.95163 0.96364 0.96351 0.93007 0.92045 0.92046 0.75631 0.83823 0.84366 0.82547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.05 37.16 0.30 -1.94 16 2 C -0.07 -1.28 0.54 -154.50 -0.08 -1.37 16 3 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 4 C 0.04 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.25 7.65 -34.44 -0.26 -13.51 16 6 H 0.06 1.50 5.68 -52.49 -0.30 1.20 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 9 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.13 1.96 3.83 -4.05 -0.02 1.94 16 14 N -0.72 -10.26 5.09 -58.49 -0.30 -10.56 16 15 C 0.20 2.76 6.67 -83.57 -0.56 2.20 16 16 C -0.15 -1.84 9.42 -39.10 -0.37 -2.21 16 17 C -0.11 -1.16 10.10 -39.47 -0.40 -1.56 16 18 C 0.04 0.42 11.17 -17.53 -0.20 0.23 16 19 N -0.44 -6.12 10.33 -10.20 -0.11 -6.23 16 20 C 0.09 1.25 7.30 -17.23 -0.13 1.13 16 21 Cl -0.04 -0.59 27.76 -51.86 -1.44 -2.03 16 22 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 23 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 27 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 32 H 0.06 0.94 8.00 -51.93 -0.42 0.53 16 33 H 0.41 5.74 4.86 -40.82 -0.20 5.55 16 34 H 0.14 1.60 6.89 -52.49 -0.36 1.24 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.16 1.25 8.06 -52.48 -0.42 0.82 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -28.44 306.97 -7.88 -36.32 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -4.76 Total: 1.81 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.62 Total: -14.81 kcal Atomic # 7 Polarization: -42.07 SS G_CDS: 0.33 Total: -41.74 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.44 Total: -2.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.44 -7.88 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229678962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.567 kcal (2) G-P(sol) polarization free energy of solvation -28.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds