Wall clock time and date at job start Mon Mar 30 2020 06:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 C 1.53005 * 109.46705 * 240.00409 * 2 1 3 5 5 C 1.50699 * 109.47335 * 59.99711 * 4 2 1 6 6 H 1.07997 * 119.99855 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00000 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99832 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46930 * 90.00752 * 9 7 5 11 11 H 1.48505 * 109.46823 * 210.00407 * 9 7 5 12 12 H 1.48500 * 109.47468 * 330.00291 * 9 7 5 13 13 C 1.52993 * 109.47233 * 120.00212 * 2 1 3 14 14 N 1.46500 * 109.47303 * 299.99820 * 13 2 1 15 15 C 1.39777 * 119.99930 * 180.02562 * 14 13 2 16 16 C 1.39218 * 120.49758 * 0.25872 * 15 14 13 17 17 C 1.38564 * 118.37368 * 180.28825 * 16 15 14 18 18 C 1.38217 * 119.26403 * 359.45403 * 17 16 15 19 19 N 1.31893 * 120.94000 * 0.28445 * 18 17 16 20 20 C 1.31886 * 121.78402 * 359.97438 * 19 18 17 21 21 Cl 1.73597 * 119.68838 * 179.97438 * 20 19 18 22 22 H 1.09001 * 109.46867 * 299.99763 * 1 2 3 23 23 H 1.08999 * 109.47119 * 59.99549 * 1 2 3 24 24 H 1.08996 * 109.46565 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46632 * 180.02562 * 3 2 1 26 26 H 1.08999 * 109.47096 * 300.00464 * 3 2 1 27 27 H 1.09001 * 109.46664 * 60.00106 * 3 2 1 28 28 H 1.09001 * 109.46744 * 179.97438 * 4 2 1 29 29 H 1.08998 * 109.46695 * 299.99762 * 4 2 1 30 30 H 0.97000 * 120.00479 * 179.97438 * 8 7 5 31 31 H 1.09006 * 109.47104 * 179.97438 * 13 2 1 32 32 H 1.09004 * 109.47156 * 60.00219 * 13 2 1 33 33 H 0.97005 * 119.99987 * 0.02562 * 14 13 2 34 34 H 1.07997 * 120.81927 * 0.02562 * 16 15 14 35 35 H 1.08002 * 120.37107 * 179.73852 * 17 16 15 36 36 H 1.08004 * 119.53124 * 180.25845 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5376 -0.0108 -2.4798 6 1 0.9170 0.8675 -2.3806 7 6 1.8710 -0.4815 -3.7321 8 7 2.6271 -1.5507 -3.8528 9 14 1.2488 0.3996 -5.2572 10 1 2.2272 1.4412 -5.6608 11 1 1.0840 -0.5793 -6.3617 12 1 -0.0594 1.0371 -4.9615 13 6 2.0401 -0.7213 1.2491 14 7 1.5518 -0.0307 2.4454 15 6 1.8900 -0.5080 3.7148 16 6 2.6946 -1.6356 3.8545 17 6 2.9975 -2.0740 5.1336 18 6 2.5049 -1.3774 6.2210 19 7 1.7493 -0.3090 6.0562 20 6 1.4326 0.1396 4.8571 21 17 0.4336 1.5510 4.7033 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1300 -0.7208 -1.2496 29 1 1.6766 -1.7488 -1.2493 30 1 2.8614 -1.8822 -4.7337 31 1 3.1301 -0.7216 1.2489 32 1 1.6768 -1.7490 1.2491 33 1 0.9938 0.7578 2.3564 34 1 3.0699 -2.1583 2.9872 35 1 3.6154 -2.9477 5.2793 36 1 2.7418 -1.7129 7.2199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229678962.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:46 Heat of formation + Delta-G solvation = -6.772511 kcal Electronic energy + Delta-G solvation = -18063.377407 eV Core-core repulsion = 15185.830208 eV Total energy + Delta-G solvation = -2877.547199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23618 -39.22881 -37.55255 -36.13736 -34.32886 -32.80691 -30.65287 -28.86346 -28.00534 -27.43257 -25.11764 -24.29949 -23.07734 -19.93704 -18.58713 -18.38466 -18.07535 -17.23176 -16.47530 -16.04361 -15.70457 -15.28333 -15.19989 -14.90212 -14.41221 -14.08422 -14.01901 -13.86202 -13.21195 -12.97515 -12.74961 -12.71833 -12.66162 -12.35660 -12.30445 -12.18883 -11.96899 -11.79278 -11.34935 -11.05368 -10.86720 -10.55183 -10.50269 -10.38017 -8.53729 -8.14513 -6.20721 0.10235 0.41582 0.94189 1.41460 1.42675 1.51996 2.29525 2.45467 2.80270 3.20586 3.68984 3.82070 3.95679 4.07557 4.13438 4.18705 4.24903 4.53867 4.66745 4.70834 4.71864 4.93114 4.96908 5.08930 5.10578 5.21780 5.39729 5.47829 5.49424 5.53866 5.57661 5.79546 5.89909 6.07216 6.33890 6.57998 6.88881 6.93649 7.46693 8.97513 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.033919 B = 0.004192 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.286469 B = 6677.814864 C = 7306.730574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.043 3.957 5 C -0.516 4.516 6 H 0.065 0.935 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.141 3.859 14 N -0.724 5.724 15 C 0.184 3.816 16 C -0.159 4.159 17 C -0.102 4.102 18 C 0.041 3.959 19 N -0.464 5.464 20 C 0.069 3.931 21 Cl -0.048 7.048 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.043 0.957 26 H 0.051 0.949 27 H 0.055 0.945 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.260 0.740 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.404 0.596 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.511 0.725 17.298 17.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.006 3.994 5 C -0.554 4.554 6 H 0.083 0.917 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 C 0.017 3.983 14 N -0.353 5.353 15 C 0.073 3.927 16 C -0.190 4.190 17 C -0.122 4.122 18 C -0.119 4.119 19 N -0.174 5.174 20 C -0.099 4.099 21 Cl -0.020 7.020 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.012 0.988 29 H 0.012 0.988 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.243 0.757 34 H 0.168 0.832 35 H 0.194 0.806 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.787 1.106 17.687 17.739 hybrid contribution -0.163 0.249 -1.996 2.018 sum -0.950 1.355 15.691 15.778 Atomic orbital electron populations 1.21687 0.94407 1.01043 1.00833 1.20687 0.96122 0.96070 0.93665 1.21689 1.00178 0.95264 1.00855 1.18943 0.94605 0.94292 0.91577 1.21587 1.30437 1.11999 0.91414 0.91656 1.25816 0.95681 0.95814 1.02296 1.70076 1.38661 1.24704 1.24062 0.85653 0.79055 0.78279 0.79315 1.20268 1.21374 1.18871 1.21422 0.98297 0.95622 0.82930 1.45009 1.56007 1.32684 1.01560 1.18593 0.94581 0.93961 0.85518 1.21453 1.00933 0.96411 1.00204 1.22399 0.97982 1.00572 0.91251 1.22910 0.96510 0.91304 1.01187 1.66761 1.12591 1.14331 1.23755 1.21023 1.04118 0.95316 0.89494 1.98353 1.67838 1.38602 1.97198 0.92576 0.92989 0.93795 0.93795 0.92950 0.92574 0.98790 0.98775 0.93132 0.92059 0.92070 0.75725 0.83171 0.80633 0.79348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 2 C -0.07 -2.34 0.54 -52.18 -0.03 -2.37 16 3 C -0.12 -4.19 8.05 71.98 0.58 -3.61 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.52 -27.00 7.65 25.60 0.20 -26.80 16 6 H 0.07 3.28 5.68 -2.91 -0.02 3.26 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.93 -54.69 13.29 21.45 0.28 -54.41 16 9 Si 0.95 42.95 29.54 68.60 2.03 44.98 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 12 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.14 4.28 3.83 86.38 0.33 4.61 16 14 N -0.72 -19.69 5.09 -338.95 -1.73 -21.41 16 15 C 0.18 4.81 6.67 38.30 0.26 5.06 16 16 C -0.16 -3.50 9.42 22.58 0.21 -3.29 16 17 C -0.10 -1.72 10.10 22.34 0.23 -1.49 16 18 C 0.04 0.78 11.17 84.68 0.95 1.73 16 19 N -0.46 -12.06 10.33 -186.19 -1.92 -13.98 16 20 C 0.07 1.89 7.30 84.88 0.62 2.51 16 21 Cl -0.05 -1.24 27.76 -2.72 -0.08 -1.32 16 22 H 0.06 1.62 6.86 -2.39 -0.02 1.60 16 23 H 0.05 1.93 6.62 -2.39 -0.02 1.92 16 24 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 27 H 0.06 1.62 6.86 -2.39 -0.02 1.60 16 28 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 29 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 30 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.06 1.85 7.98 -2.38 -0.02 1.83 16 32 H 0.06 1.85 8.00 -2.38 -0.02 1.83 16 33 H 0.40 10.89 4.86 -92.70 -0.45 10.44 16 34 H 0.15 3.06 6.89 -2.91 -0.02 3.04 16 35 H 0.18 1.61 8.06 -2.91 -0.02 1.59 16 36 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -61.62 306.97 3.72 -57.90 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.64 Total: 12.79 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: 4.50 Total: -24.55 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -3.37 Total: -89.80 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -0.08 Total: -1.32 kcal Total: -61.62 3.72 -57.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229678962.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.125 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds