Wall clock time and date at job start Mon Mar 30 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 N 1.46907 * 109.47295 * 240.00046 * 2 1 3 5 5 C 1.46899 * 110.99803 * 299.79705 * 4 2 1 6 6 C 1.50703 * 109.47101 * 174.41533 * 5 4 2 7 7 H 1.07999 * 119.99905 * 4.93367 * 6 5 4 8 8 C 1.37879 * 119.99946 * 184.93737 * 6 5 4 9 9 N 1.31516 * 119.99554 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00112 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47023 * 90.00144 * 10 8 6 12 12 H 1.48499 * 109.47055 * 209.99993 * 10 8 6 13 13 H 1.48498 * 109.47362 * 330.00076 * 10 8 6 14 14 C 1.39000 * 111.00200 * 175.84235 * 4 2 1 15 15 N 1.32424 * 119.70539 * 60.60133 * 14 4 2 16 16 C 1.31950 * 121.62076 * 179.97438 * 15 14 4 17 17 C 1.38066 * 120.85615 * 0.02562 * 16 15 14 18 18 C 1.38837 * 119.32677 * 359.97438 * 17 16 15 19 19 C 1.38340 * 118.50791 * 359.74608 * 18 17 16 20 20 C 1.50694 * 120.45476 * 180.26845 * 19 18 17 21 21 Cl 1.80300 * 109.47135 * 275.85478 * 20 19 18 22 22 H 1.08999 * 109.47379 * 66.70727 * 1 2 3 23 23 H 1.09006 * 109.47349 * 186.70697 * 1 2 3 24 24 H 1.08995 * 109.47118 * 306.70464 * 1 2 3 25 25 H 1.09003 * 109.47088 * 120.00578 * 2 1 3 26 26 H 1.09001 * 109.46796 * 63.85612 * 3 2 1 27 27 H 1.09004 * 109.47549 * 183.85045 * 3 2 1 28 28 H 1.08999 * 109.47453 * 303.85450 * 3 2 1 29 29 H 1.09001 * 109.46889 * 294.41283 * 5 4 2 30 30 H 1.09005 * 109.47364 * 54.41807 * 5 4 2 31 31 H 0.96998 * 119.99499 * 180.02562 * 9 8 6 32 32 H 1.08000 * 119.56921 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.33482 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.74484 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47269 * 35.84861 * 20 19 18 36 36 H 1.09003 * 109.47771 * 155.85070 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 1.5526 -2.0849 -1.2310 6 6 1.9573 -2.7211 -2.5358 7 1 2.5742 -2.1753 -3.2343 8 6 1.5398 -4.0000 -2.8380 9 7 1.8926 -4.5549 -3.9770 10 14 0.4733 -4.9443 -1.6297 11 1 -0.9584 -4.6756 -1.9183 12 1 0.7410 -6.3987 -1.7648 13 1 0.7893 -4.5093 -0.2455 14 6 3.4060 -0.6301 -1.2796 15 7 4.1435 -1.1593 -0.3155 16 6 5.4619 -1.1220 -0.3533 17 6 6.1234 -0.5247 -1.4077 18 6 5.3869 0.0421 -2.4392 19 6 4.0062 -0.0176 -2.3748 20 6 3.1639 0.5780 -3.4733 21 17 2.9462 2.3426 -3.1740 22 1 -0.3634 0.4064 -0.9439 23 1 -0.3634 -1.0207 0.1200 24 1 -0.3633 0.6142 0.8239 25 1 1.8933 -0.5139 0.8900 26 1 1.7342 1.9359 0.9225 27 1 3.1278 1.4433 -0.0690 28 1 1.6214 1.9759 -0.8534 29 1 1.9993 -2.6367 -0.4038 30 1 0.4668 -2.1062 -1.1378 31 1 1.5986 -5.4544 -4.1897 32 1 6.0309 -1.5638 0.4514 33 1 7.2029 -0.4993 -1.4304 34 1 5.8807 0.5148 -3.2752 35 1 3.6606 0.4308 -4.4324 36 1 2.1897 0.0893 -3.4898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232664690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:16 Heat of formation + Delta-G solvation = 32.310708 kcal Electronic energy + Delta-G solvation = -19217.537937 eV Core-core repulsion = 16341.685514 eV Total energy + Delta-G solvation = -2875.852423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.23977 -37.09623 -35.59751 -32.97551 -32.75958 -31.92636 -30.08586 -27.60850 -26.50311 -26.08162 -23.06155 -21.68160 -21.34592 -19.55374 -17.01673 -16.69056 -15.97200 -15.34172 -15.03760 -14.41173 -14.15537 -13.71047 -13.57099 -13.09881 -12.87455 -12.65322 -12.52163 -12.23145 -11.99973 -11.84544 -11.76850 -11.53838 -10.95439 -10.76176 -10.50586 -10.32399 -10.18545 -9.93119 -9.88725 -9.38142 -9.30734 -9.09271 -8.61619 -8.27116 -7.75320 -6.11511 -4.09001 1.39363 1.68537 2.91724 3.25526 3.33433 3.37192 4.25505 4.33160 4.38916 4.84518 5.11978 5.22946 5.26118 5.32746 5.40231 5.48038 5.58132 5.71776 5.85078 5.88335 5.99035 6.21649 6.21882 6.24703 6.30319 6.45428 6.55595 6.61530 6.67216 6.77482 6.90489 7.07072 7.49099 7.73108 8.09951 8.46607 8.52015 8.91993 9.49812 11.01162 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.008202 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.633783 B = 3412.958873 C = 3717.477214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 C -0.143 4.143 4 N -0.482 5.482 5 C 0.163 3.837 6 C -0.515 4.515 7 H 0.078 0.922 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.872 3.128 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.369 3.631 15 N -0.513 5.513 16 C 0.115 3.885 17 C -0.197 4.197 18 C -0.057 4.057 19 C -0.130 4.130 20 C 0.032 3.968 21 Cl -0.199 7.199 22 H 0.066 0.934 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.004 0.996 30 H 0.037 0.963 31 H 0.264 0.736 32 H 0.147 0.853 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.082 10.732 5.074 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.201 4.201 4 N -0.206 5.206 5 C 0.039 3.961 6 C -0.553 4.553 7 H 0.096 0.904 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.699 3.301 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.140 3.860 15 N -0.225 5.225 16 C -0.043 4.043 17 C -0.217 4.217 18 C -0.084 4.084 19 C -0.133 4.133 20 C -0.031 4.031 21 Cl -0.172 7.172 22 H 0.085 0.915 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.022 0.978 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.110 0.890 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.396 10.525 5.290 12.259 hybrid contribution 0.317 -0.799 0.479 0.984 sum 3.713 9.726 5.769 11.902 Atomic orbital electron populations 1.21853 0.94400 1.01819 1.01927 1.21569 0.95437 0.94375 0.91309 1.21902 1.00680 0.95789 1.01684 1.60364 1.03363 1.19121 1.37761 1.20309 0.95844 0.81894 0.98060 1.20984 1.32880 0.99514 1.01894 0.90366 1.24826 0.95856 0.97202 0.95001 1.69882 1.45801 1.15271 1.22590 0.86895 0.81282 0.79469 0.82441 1.19991 1.21198 1.19081 1.19485 0.90278 0.88233 0.88030 1.67817 1.07640 1.17417 1.29649 1.22468 0.90084 0.94935 0.96841 1.21899 1.00775 1.02707 0.96283 1.21333 0.92964 0.96159 0.97925 1.20295 0.93669 1.02055 0.97324 1.23087 1.04183 0.79360 0.96443 1.98678 1.98150 1.23174 1.97246 0.91529 0.92479 0.92791 0.93618 0.93049 0.93447 0.91216 0.97836 0.94519 0.92613 0.83590 0.85336 0.85164 0.88963 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.77 37.16 0.33 -1.92 16 2 C 0.08 1.42 2.50 -67.71 -0.17 1.25 16 3 C -0.14 -2.23 9.04 37.16 0.34 -1.89 16 4 N -0.48 -9.86 3.28 -166.99 -0.55 -10.41 16 5 C 0.16 3.90 3.48 -4.97 -0.02 3.89 16 6 C -0.51 -14.11 9.27 -34.44 -0.32 -14.43 16 7 H 0.08 2.28 6.63 -52.49 -0.35 1.94 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.85 13.96 55.43 0.77 -26.07 16 10 Si 0.87 21.35 27.37 -169.99 -4.65 16.69 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.27 -6.39 6.69 56.52 0.38 -6.01 16 14 C 0.37 7.38 2.67 -155.01 -0.41 6.96 16 15 N -0.51 -10.24 9.58 -12.44 -0.12 -10.36 16 16 C 0.12 1.89 11.17 -17.56 -0.20 1.69 16 17 C -0.20 -2.85 10.10 -39.42 -0.40 -3.25 16 18 C -0.06 -0.89 9.87 -39.32 -0.39 -1.27 16 19 C -0.13 -2.32 4.79 -104.27 -0.50 -2.82 16 20 C 0.03 0.53 6.37 36.00 0.23 0.76 16 21 Cl -0.20 -3.01 27.99 -51.86 -1.45 -4.46 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.06 0.94 6.66 -51.93 -0.35 0.60 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.86 7.96 -51.93 -0.41 0.45 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.79 6.97 -51.93 -0.36 0.43 16 28 H 0.07 1.08 7.00 -51.93 -0.36 0.72 16 29 H 0.00 0.10 7.26 -51.93 -0.38 -0.28 16 30 H 0.04 0.86 5.33 -51.93 -0.28 0.59 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.15 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 34 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 36 H 0.13 2.45 7.00 -51.93 -0.36 2.08 16 LS Contribution 306.44 15.07 4.62 4.62 Total: -1.00 -30.34 306.44 -7.96 -38.30 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -4.97 Total: 0.73 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -1.61 Total: -9.04 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.11 Total: -46.84 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.65 Total: 16.69 kcal Atomic # 17 Polarization: -3.01 SS G_CDS: -1.45 Total: -4.46 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.34 -7.96 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232664690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.610 kcal (2) G-P(sol) polarization free energy of solvation -30.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds