Wall clock time and date at job start Mon Mar 30 2020 06:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 N 1.46907 * 109.47295 * 240.00046 * 2 1 3 5 5 C 1.46899 * 110.99803 * 299.79705 * 4 2 1 6 6 C 1.50703 * 109.47101 * 174.41533 * 5 4 2 7 7 H 1.07999 * 119.99905 * 4.93367 * 6 5 4 8 8 C 1.37879 * 119.99946 * 184.93737 * 6 5 4 9 9 N 1.31516 * 119.99554 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00112 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.47023 * 90.00144 * 10 8 6 12 12 H 1.48499 * 109.47055 * 209.99993 * 10 8 6 13 13 H 1.48498 * 109.47362 * 330.00076 * 10 8 6 14 14 C 1.39000 * 111.00200 * 175.84235 * 4 2 1 15 15 N 1.32424 * 119.70539 * 60.60133 * 14 4 2 16 16 C 1.31950 * 121.62076 * 179.97438 * 15 14 4 17 17 C 1.38066 * 120.85615 * 0.02562 * 16 15 14 18 18 C 1.38837 * 119.32677 * 359.97438 * 17 16 15 19 19 C 1.38340 * 118.50791 * 359.74608 * 18 17 16 20 20 C 1.50694 * 120.45476 * 180.26845 * 19 18 17 21 21 Cl 1.80300 * 109.47135 * 275.85478 * 20 19 18 22 22 H 1.08999 * 109.47379 * 66.70727 * 1 2 3 23 23 H 1.09006 * 109.47349 * 186.70697 * 1 2 3 24 24 H 1.08995 * 109.47118 * 306.70464 * 1 2 3 25 25 H 1.09003 * 109.47088 * 120.00578 * 2 1 3 26 26 H 1.09001 * 109.46796 * 63.85612 * 3 2 1 27 27 H 1.09004 * 109.47549 * 183.85045 * 3 2 1 28 28 H 1.08999 * 109.47453 * 303.85450 * 3 2 1 29 29 H 1.09001 * 109.46889 * 294.41283 * 5 4 2 30 30 H 1.09005 * 109.47364 * 54.41807 * 5 4 2 31 31 H 0.96998 * 119.99499 * 180.02562 * 9 8 6 32 32 H 1.08000 * 119.56921 * 179.97438 * 16 15 14 33 33 H 1.08001 * 120.33482 * 180.02562 * 17 16 15 34 34 H 1.07998 * 120.74484 * 180.02562 * 18 17 16 35 35 H 1.09004 * 109.47269 * 35.84861 * 20 19 18 36 36 H 1.09003 * 109.47771 * 155.85070 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 1.5526 -2.0849 -1.2310 6 6 1.9573 -2.7211 -2.5358 7 1 2.5742 -2.1753 -3.2343 8 6 1.5398 -4.0000 -2.8380 9 7 1.8926 -4.5549 -3.9770 10 14 0.4733 -4.9443 -1.6297 11 1 -0.9584 -4.6756 -1.9183 12 1 0.7410 -6.3987 -1.7648 13 1 0.7893 -4.5093 -0.2455 14 6 3.4060 -0.6301 -1.2796 15 7 4.1435 -1.1593 -0.3155 16 6 5.4619 -1.1220 -0.3533 17 6 6.1234 -0.5247 -1.4077 18 6 5.3869 0.0421 -2.4392 19 6 4.0062 -0.0176 -2.3748 20 6 3.1639 0.5780 -3.4733 21 17 2.9462 2.3426 -3.1740 22 1 -0.3634 0.4064 -0.9439 23 1 -0.3634 -1.0207 0.1200 24 1 -0.3633 0.6142 0.8239 25 1 1.8933 -0.5139 0.8900 26 1 1.7342 1.9359 0.9225 27 1 3.1278 1.4433 -0.0690 28 1 1.6214 1.9759 -0.8534 29 1 1.9993 -2.6367 -0.4038 30 1 0.4668 -2.1062 -1.1378 31 1 1.5986 -5.4544 -4.1897 32 1 6.0309 -1.5638 0.4514 33 1 7.2029 -0.4993 -1.4304 34 1 5.8807 0.5148 -3.2752 35 1 3.6606 0.4308 -4.4324 36 1 2.1897 0.0893 -3.4898 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232664690.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:16 Heat of formation + Delta-G solvation = 14.055714 kcal Electronic energy + Delta-G solvation = -19218.329533 eV Core-core repulsion = 16341.685514 eV Total energy + Delta-G solvation = -2876.644019 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.60201 -38.52485 -36.86658 -34.93459 -34.10073 -33.39710 -31.66120 -29.17313 -27.97088 -27.44553 -24.54139 -23.33828 -22.73838 -20.97596 -18.99821 -18.08394 -17.43818 -16.85301 -16.46806 -16.07422 -15.53424 -15.17336 -15.02029 -14.61869 -14.35509 -14.19925 -13.97434 -13.67075 -13.56548 -13.24610 -13.01882 -12.87083 -12.68808 -12.40349 -12.06584 -11.88906 -11.75095 -11.48208 -11.39306 -11.16324 -10.78641 -10.60659 -10.43791 -9.58674 -9.33733 -8.28948 -6.30097 0.09963 0.41126 1.31286 1.33524 1.43523 1.61500 2.32726 2.85171 2.98256 3.07941 3.57587 3.89592 3.96813 4.08526 4.13220 4.18483 4.38143 4.48148 4.51910 4.63628 4.73002 4.82400 4.91537 4.95607 4.97302 5.05447 5.07930 5.23788 5.28273 5.34544 5.39830 5.53163 5.71014 5.93372 6.47579 6.57899 6.74576 7.14076 7.32494 8.86482 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.008202 C = 0.007530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.633783 B = 3412.958873 C = 3717.477214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.076 3.924 3 C -0.129 4.129 4 N -0.483 5.483 5 C 0.178 3.822 6 C -0.511 4.511 7 H 0.050 0.950 8 C 0.018 3.982 9 N -0.941 5.941 10 Si 0.933 3.067 11 H -0.260 1.260 12 H -0.284 1.284 13 H -0.261 1.261 14 C 0.337 3.663 15 N -0.547 5.547 16 C 0.098 3.902 17 C -0.182 4.182 18 C -0.062 4.062 19 C -0.146 4.146 20 C 0.038 3.962 21 Cl -0.184 7.184 22 H 0.063 0.937 23 H 0.044 0.956 24 H 0.084 0.916 25 H 0.031 0.969 26 H 0.075 0.925 27 H 0.033 0.967 28 H 0.068 0.932 29 H -0.017 1.017 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.174 0.826 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.107 0.893 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.695 11.821 6.078 14.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.031 4.031 3 C -0.187 4.187 4 N -0.207 5.207 5 C 0.053 3.947 6 C -0.549 4.549 7 H 0.068 0.932 8 C -0.180 4.180 9 N -0.581 5.581 10 Si 0.757 3.243 11 H -0.185 1.185 12 H -0.210 1.210 13 H -0.185 1.185 14 C 0.109 3.891 15 N -0.260 5.260 16 C -0.060 4.060 17 C -0.201 4.201 18 C -0.088 4.088 19 C -0.150 4.150 20 C -0.025 4.025 21 Cl -0.157 7.157 22 H 0.082 0.918 23 H 0.063 0.937 24 H 0.103 0.897 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.001 0.999 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.191 0.809 33 H 0.189 0.811 34 H 0.179 0.821 35 H 0.125 0.875 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.007 11.643 6.305 13.833 hybrid contribution 0.268 -1.036 0.158 1.082 sum 4.275 10.607 6.463 13.136 Atomic orbital electron populations 1.21839 0.92983 1.01718 1.03049 1.21706 0.96602 0.95095 0.89666 1.21777 0.99654 0.94377 1.02856 1.60295 1.04502 1.16779 1.39150 1.19966 0.95742 0.83891 0.95149 1.21197 1.31674 0.99405 1.02607 0.93185 1.25627 0.97418 0.98332 0.96656 1.70013 1.47694 1.15819 1.24595 0.85922 0.80123 0.77926 0.80310 1.18509 1.20988 1.18512 1.19590 0.89993 0.90234 0.89243 1.67738 1.09476 1.18506 1.30281 1.23069 0.89276 0.95167 0.98460 1.22358 1.02824 1.00243 0.94696 1.21782 0.92068 0.95803 0.99132 1.20511 0.95087 1.02439 0.96914 1.22875 1.02606 0.80058 0.96981 1.98673 1.98130 1.21692 1.97255 0.91811 0.93673 0.89716 0.95121 0.90596 0.94771 0.91333 0.99941 0.94079 0.92553 0.80852 0.81106 0.82066 0.87517 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.20 8.77 71.98 0.63 -3.57 16 2 C 0.08 2.67 2.50 44.91 0.11 2.78 16 3 C -0.13 -3.86 9.04 71.98 0.65 -3.21 16 4 N -0.48 -20.04 3.28 -682.25 -2.24 -22.27 16 5 C 0.18 8.65 3.48 85.56 0.30 8.95 16 6 C -0.51 -28.74 9.27 25.60 0.24 -28.50 16 7 H 0.05 3.04 6.63 -2.91 -0.02 3.02 16 8 C 0.02 1.02 5.47 84.65 0.46 1.48 16 9 N -0.94 -57.61 13.96 21.45 0.30 -57.31 16 10 Si 0.93 44.42 27.37 68.60 1.88 46.30 16 11 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 12 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 13 H -0.26 -12.08 6.69 99.48 0.67 -11.42 16 14 C 0.34 13.57 2.67 133.05 0.36 13.93 16 15 N -0.55 -21.78 9.58 -193.26 -1.85 -23.63 16 16 C 0.10 3.07 11.17 84.63 0.95 4.02 16 17 C -0.18 -4.76 10.10 22.37 0.23 -4.54 16 18 C -0.06 -1.77 9.87 22.44 0.22 -1.55 16 19 C -0.15 -5.17 4.79 -19.63 -0.09 -5.26 16 20 C 0.04 1.26 6.37 71.23 0.45 1.71 16 21 Cl -0.18 -5.37 27.99 -2.72 -0.08 -5.45 16 22 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 23 H 0.04 1.46 6.66 -2.38 -0.02 1.44 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.03 1.16 7.96 -2.39 -0.02 1.14 16 26 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.03 1.10 6.97 -2.38 -0.02 1.09 16 28 H 0.07 2.05 7.00 -2.39 -0.02 2.03 16 29 H -0.02 -0.90 7.26 -2.39 -0.02 -0.92 16 30 H 0.04 1.94 5.33 -2.38 -0.01 1.93 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 33 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 34 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 35 H 0.11 3.16 8.13 -2.38 -0.02 3.14 16 36 H 0.10 3.87 7.00 -2.39 -0.02 3.86 16 Total: -1.00 -67.10 306.44 3.54 -63.56 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 1.03 Total: 12.57 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: 4.50 Total: -13.77 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -3.79 Total: -103.21 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Atomic # 17 Polarization: -5.37 SS G_CDS: -0.08 Total: -5.45 kcal Total: -67.10 3.54 -63.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232664690.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.615 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds