Wall clock time and date at job start Mon Mar 30 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42896 * 109.47231 * 120.00066 * 2 1 3 5 5 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 6 6 C 1.38257 * 119.95586 * 264.72927 * 5 2 1 7 7 C 1.38134 * 120.07614 * 179.72657 * 6 5 2 8 8 C 1.38766 * 119.99630 * 0.54745 * 7 6 5 9 9 O 1.35898 * 120.04348 * 179.75119 * 8 7 6 10 10 C 1.42901 * 117.00052 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47011 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47030 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99954 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00441 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47122 * 89.99904 * 17 15 13 19 19 H 1.48498 * 109.47355 * 210.00042 * 17 15 13 20 20 H 1.48505 * 109.46978 * 330.00182 * 17 15 13 21 21 C 1.38673 * 119.91248 * 359.72450 * 8 7 6 22 22 C 1.38383 * 119.92386 * 0.02562 * 21 8 7 23 23 F 1.35093 * 119.99601 * 180.02562 * 22 21 8 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96708 * 114.00101 * 59.99127 * 4 2 1 28 28 H 1.08003 * 119.96018 * 359.97438 * 6 5 2 29 29 H 1.08001 * 119.99692 * 180.25181 * 7 6 5 30 30 H 1.08999 * 109.46880 * 300.00387 * 10 9 8 31 31 H 1.09004 * 109.47208 * 59.99879 * 10 9 8 32 32 H 1.08999 * 109.47332 * 299.99909 * 11 10 9 33 33 H 1.09005 * 109.46963 * 60.00166 * 11 10 9 34 34 H 1.08999 * 109.47243 * 300.00264 * 12 11 10 35 35 H 1.09005 * 109.46877 * 60.00413 * 12 11 10 36 36 H 0.96998 * 120.00140 * 179.97438 * 16 15 13 37 37 H 1.08006 * 120.03442 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3661 -2.0505 -1.1660 7 6 2.8214 -2.7056 -2.2937 8 6 2.9549 -2.0157 -3.4903 9 8 3.4076 -2.6580 -4.5991 10 6 3.7279 -4.0438 -4.4608 11 6 4.2173 -4.5906 -5.8033 12 6 4.5609 -6.0741 -5.6549 13 6 5.0424 -6.6129 -6.9775 14 1 5.0981 -5.9621 -7.8376 15 6 5.4117 -7.9365 -7.0893 16 7 5.8323 -8.4066 -8.2434 17 14 5.3159 -9.0619 -5.6015 18 1 3.9752 -9.6983 -5.5476 19 1 6.3591 -10.1134 -5.7082 20 1 5.5373 -8.2686 -4.3657 21 6 2.6254 -0.6702 -3.5533 22 6 2.1647 -0.0187 -2.4227 23 9 1.8427 1.2920 -2.4826 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7209 -1.5953 1.2329 28 1 2.2670 -2.5868 -0.2338 29 1 3.0780 -3.7535 -2.2428 30 1 4.5120 -4.1625 -3.7129 31 1 2.8400 -4.5924 -4.1465 32 1 3.4336 -4.4718 -6.5514 33 1 5.1054 -4.0419 -6.1171 34 1 5.3448 -6.1925 -4.9069 35 1 3.6731 -6.6230 -5.3410 36 1 6.0925 -9.3377 -8.3220 37 1 2.7281 -0.1315 -4.4837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235239838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:41 Heat of formation + Delta-G solvation = -127.762033 kcal Electronic energy + Delta-G solvation = -19524.490747 eV Core-core repulsion = 16181.067923 eV Total energy + Delta-G solvation = -3343.422824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.18825 -40.33852 -38.62555 -36.61282 -34.19899 -32.17347 -31.69102 -30.94282 -29.00199 -27.47558 -24.14068 -23.84332 -22.38613 -21.27551 -20.30593 -18.70485 -17.46719 -17.22336 -16.68446 -16.19880 -16.12825 -15.71442 -15.36809 -15.11320 -14.57730 -14.20411 -14.12059 -13.66151 -13.28658 -12.95243 -12.86988 -12.75962 -12.34997 -12.12058 -12.09810 -11.55065 -11.43618 -11.11878 -10.83674 -10.69981 -10.55512 -10.14763 -9.93306 -9.80454 -9.30724 -9.11411 -8.62044 -8.33328 -6.11681 -4.11158 0.89843 1.02372 3.08134 3.24267 3.30948 3.32276 3.33692 3.97344 4.12193 4.23896 4.37345 4.47290 4.73847 4.77488 4.86851 5.10166 5.11674 5.20608 5.29391 5.30320 5.33445 5.53871 5.66504 5.68264 5.72561 5.80567 6.04920 6.09457 6.28678 6.30563 6.53768 6.68622 7.12100 7.20021 7.24993 7.35161 7.68544 8.44892 8.92825 9.49275 11.01607 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.003187 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.777388 B = 8782.995948 C = 9421.938480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.152 3.848 3 H 0.108 0.892 4 O -0.556 6.556 5 C -0.201 4.201 6 C -0.044 4.044 7 C -0.216 4.216 8 C 0.171 3.829 9 O -0.308 6.308 10 C 0.055 3.945 11 C -0.101 4.101 12 C -0.009 4.009 13 C -0.523 4.523 14 H 0.074 0.926 15 C 0.067 3.933 16 N -0.901 5.901 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.192 4.192 22 C 0.145 3.855 23 F -0.134 7.134 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.374 0.626 28 H 0.133 0.867 29 H 0.139 0.861 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.264 0.736 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.166 15.177 17.249 25.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.093 3.907 3 H 0.126 0.874 4 O -0.362 6.362 5 C -0.202 4.202 6 C -0.062 4.062 7 C -0.235 4.235 8 C 0.124 3.876 9 O -0.220 6.220 10 C -0.019 4.019 11 C -0.139 4.139 12 C -0.047 4.047 13 C -0.561 4.561 14 H 0.092 0.908 15 C -0.134 4.134 16 N -0.539 5.539 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C -0.212 4.212 22 C 0.126 3.874 23 F -0.112 7.112 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.222 0.778 28 H 0.151 0.849 29 H 0.157 0.843 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.032 0.968 36 H 0.074 0.926 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.799 15.700 17.056 25.167 hybrid contribution -0.300 -1.225 0.527 1.367 sum -10.099 14.475 17.583 24.913 Atomic orbital electron populations 1.22478 0.95250 1.02941 1.03072 1.20581 0.93060 0.95865 0.81158 0.87443 1.86635 1.77228 1.29214 1.43084 1.20394 1.08520 0.95800 0.95489 1.20474 0.95243 0.92451 0.98057 1.21393 1.07751 1.01649 0.92684 1.18739 0.91330 0.91149 0.86417 1.86152 1.78107 1.26190 1.31590 1.23315 0.99687 0.77121 1.01826 1.21540 1.01323 0.98115 0.92933 1.19514 0.96300 0.90359 0.98494 1.21055 1.43925 0.95864 0.95281 0.90802 1.25029 0.94538 0.98065 0.95812 1.69908 1.44509 1.15313 1.24195 0.86771 0.78047 0.80640 0.83767 1.20211 1.21248 1.19052 1.20267 1.08128 0.93466 0.99333 1.16947 0.98998 0.77951 0.93547 1.91490 1.90207 1.32577 1.96968 0.91315 0.91288 0.91980 0.77769 0.84947 0.84313 0.91999 0.92024 0.91470 0.91437 0.96325 0.96778 0.92594 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 9.52 37.16 0.35 -0.93 16 2 C 0.15 1.34 3.60 -27.88 -0.10 1.24 16 3 H 0.11 0.98 7.79 -51.93 -0.40 0.58 16 4 O -0.56 -4.87 12.98 -35.23 -0.46 -5.33 16 5 C -0.20 -2.05 5.08 -104.53 -0.53 -2.58 16 6 C -0.04 -0.43 9.30 -39.61 -0.37 -0.79 16 7 C -0.22 -2.47 9.04 -39.42 -0.36 -2.83 16 8 C 0.17 2.29 6.69 -39.23 -0.26 2.02 16 9 O -0.31 -4.74 10.14 -19.42 -0.20 -4.94 16 10 C 0.05 0.84 4.74 37.16 0.18 1.02 16 11 C -0.10 -1.93 5.52 -26.73 -0.15 -2.08 16 12 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 13 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 14 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 16 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 17 Si 0.88 21.03 27.47 -169.99 -4.67 16.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 21 C -0.19 -2.39 9.97 -39.37 -0.39 -2.79 16 22 C 0.15 1.67 7.24 -39.44 -0.29 1.38 16 23 F -0.13 -1.52 16.56 2.25 0.04 -1.48 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.37 1.95 7.32 45.56 0.33 2.28 16 28 H 0.13 0.87 6.40 -52.48 -0.34 0.54 16 29 H 0.14 1.45 6.30 -52.49 -0.33 1.12 16 30 H 0.06 0.88 7.66 -51.93 -0.40 0.48 16 31 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 35 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.14 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 314.67 15.07 4.74 4.74 Total: -1.00 -31.03 314.67 -6.65 -37.68 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -4.42 Total: -0.65 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.46 Total: -19.77 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.77 Total: -26.62 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.65 Total: -10.27 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.03 -6.65 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235239838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.083 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds