Wall clock time and date at job start Mon Mar 30 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 O 1.42896 * 109.47231 * 120.00066 * 2 1 3 5 5 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 6 6 C 1.38257 * 119.95586 * 264.72927 * 5 2 1 7 7 C 1.38134 * 120.07614 * 179.72657 * 6 5 2 8 8 C 1.38766 * 119.99630 * 0.54745 * 7 6 5 9 9 O 1.35898 * 120.04348 * 179.75119 * 8 7 6 10 10 C 1.42901 * 117.00052 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47248 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47011 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47030 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99954 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99825 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00441 * 359.97438 * 15 13 12 18 18 H 1.48505 * 109.47122 * 89.99904 * 17 15 13 19 19 H 1.48498 * 109.47355 * 210.00042 * 17 15 13 20 20 H 1.48505 * 109.46978 * 330.00182 * 17 15 13 21 21 C 1.38673 * 119.91248 * 359.72450 * 8 7 6 22 22 C 1.38383 * 119.92386 * 0.02562 * 21 8 7 23 23 F 1.35093 * 119.99601 * 180.02562 * 22 21 8 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.96708 * 114.00101 * 59.99127 * 4 2 1 28 28 H 1.08003 * 119.96018 * 359.97438 * 6 5 2 29 29 H 1.08001 * 119.99692 * 180.25181 * 7 6 5 30 30 H 1.08999 * 109.46880 * 300.00387 * 10 9 8 31 31 H 1.09004 * 109.47208 * 59.99879 * 10 9 8 32 32 H 1.08999 * 109.47332 * 299.99909 * 11 10 9 33 33 H 1.09005 * 109.46963 * 60.00166 * 11 10 9 34 34 H 1.08999 * 109.47243 * 300.00264 * 12 11 10 35 35 H 1.09005 * 109.46877 * 60.00413 * 12 11 10 36 36 H 0.96998 * 120.00140 * 179.97438 * 16 15 13 37 37 H 1.08006 * 120.03442 * 180.02562 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0323 -0.7104 -1.2305 6 6 2.3661 -2.0505 -1.1660 7 6 2.8214 -2.7056 -2.2937 8 6 2.9549 -2.0157 -3.4903 9 8 3.4076 -2.6580 -4.5991 10 6 3.7279 -4.0438 -4.4608 11 6 4.2173 -4.5906 -5.8033 12 6 4.5609 -6.0741 -5.6549 13 6 5.0424 -6.6129 -6.9775 14 1 5.0981 -5.9621 -7.8376 15 6 5.4117 -7.9365 -7.0893 16 7 5.8323 -8.4066 -8.2434 17 14 5.3159 -9.0619 -5.6015 18 1 3.9752 -9.6983 -5.5476 19 1 6.3591 -10.1134 -5.7082 20 1 5.5373 -8.2686 -4.3657 21 6 2.6254 -0.6702 -3.5533 22 6 2.1647 -0.0187 -2.4227 23 9 1.8427 1.2920 -2.4826 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.7209 -1.5953 1.2329 28 1 2.2670 -2.5868 -0.2338 29 1 3.0780 -3.7535 -2.2428 30 1 4.5120 -4.1625 -3.7129 31 1 2.8400 -4.5924 -4.1465 32 1 3.4336 -4.4718 -6.5514 33 1 5.1054 -4.0419 -6.1171 34 1 5.3448 -6.1925 -4.9069 35 1 3.6731 -6.6230 -5.3410 36 1 6.0925 -9.3377 -8.3220 37 1 2.7281 -0.1315 -4.4837 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235239838.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:41 Heat of formation + Delta-G solvation = -147.971809 kcal Electronic energy + Delta-G solvation = -19525.367109 eV Core-core repulsion = 16181.067923 eV Total energy + Delta-G solvation = -3344.299186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.06490 -41.27654 -39.48090 -37.46714 -35.93989 -33.91768 -32.58818 -31.84899 -29.92897 -28.99781 -25.36860 -24.79684 -23.52777 -22.18162 -21.87739 -19.66668 -18.97351 -18.16513 -17.96622 -17.30763 -17.06171 -16.68150 -16.33602 -16.06904 -15.82368 -15.42394 -15.09558 -14.93179 -14.77708 -14.04725 -13.81131 -13.73464 -13.67199 -13.28983 -12.98317 -12.78358 -12.70899 -12.18041 -12.06800 -11.89215 -11.83300 -11.71578 -11.42779 -11.34375 -11.22083 -10.76877 -9.98071 -9.24301 -8.29467 -6.35520 0.03341 0.16234 1.38513 1.41123 1.52559 2.02434 2.37303 2.45307 3.05923 3.22477 3.43670 3.49440 3.65785 3.93952 4.04364 4.04913 4.10370 4.19436 4.27058 4.36080 4.41840 4.71306 4.75556 4.76734 4.86307 4.91165 4.96004 4.98516 5.20650 5.22602 5.28345 5.41806 5.50997 5.61414 5.65451 6.25305 6.33574 6.73175 6.75492 7.29185 8.87581 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035355 B = 0.003187 C = 0.002971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.777388 B = 8782.995948 C = 9421.938480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 H 0.100 0.900 4 O -0.566 6.566 5 C -0.194 4.194 6 C -0.039 4.039 7 C -0.215 4.215 8 C 0.146 3.854 9 O -0.329 6.329 10 C 0.065 3.935 11 C -0.097 4.097 12 C -0.006 4.006 13 C -0.539 4.539 14 H 0.028 0.972 15 C 0.000 4.000 16 N -0.954 5.954 17 Si 0.956 3.044 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.238 1.238 21 C -0.205 4.205 22 C 0.134 3.866 23 F -0.136 7.136 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.390 0.610 28 H 0.169 0.831 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.267 0.733 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 14.673 20.955 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.096 3.904 3 H 0.118 0.882 4 O -0.374 6.374 5 C -0.196 4.196 6 C -0.057 4.057 7 C -0.234 4.234 8 C 0.100 3.900 9 O -0.243 6.243 10 C -0.009 4.009 11 C -0.135 4.135 12 C -0.043 4.043 13 C -0.577 4.577 14 H 0.046 0.954 15 C -0.196 4.196 16 N -0.594 5.594 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.213 1.213 20 H -0.161 1.161 21 C -0.224 4.224 22 C 0.115 3.885 23 F -0.115 7.115 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.241 0.759 28 H 0.187 0.813 29 H 0.171 0.829 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.865 15.222 20.777 27.954 hybrid contribution 0.015 -0.954 -0.676 1.169 sum -10.850 14.268 20.101 26.932 Atomic orbital electron populations 1.22435 0.93912 1.03714 1.03230 1.20546 0.93974 0.95364 0.80521 0.88211 1.86618 1.77497 1.30627 1.42696 1.20690 1.07282 0.96195 0.95421 1.20874 0.93695 0.92171 0.98923 1.21615 1.07217 1.02306 0.92255 1.18911 0.92945 0.91475 0.86667 1.86075 1.79046 1.26075 1.33067 1.23051 1.00952 0.77577 0.99309 1.21315 1.00575 0.96288 0.95291 1.19427 0.96924 0.92408 0.95556 1.21462 1.43942 0.95737 0.96514 0.95400 1.26119 0.93970 1.00076 0.99470 1.70085 1.46210 1.15986 1.27159 0.85573 0.78443 0.78106 0.80010 1.18916 1.21286 1.16057 1.20350 1.08681 0.93609 0.99799 1.17073 0.99522 0.78018 0.93926 1.91481 1.90263 1.32731 1.97006 0.90442 0.91874 0.90913 0.75902 0.81349 0.82902 0.90361 0.90125 0.92693 0.92794 0.95108 0.95160 0.92440 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 9.52 71.98 0.69 -1.37 16 2 C 0.16 2.33 3.60 29.85 0.11 2.44 16 3 H 0.10 1.66 7.79 -2.39 -0.02 1.64 16 4 O -0.57 -8.04 12.98 -148.98 -1.93 -9.97 16 5 C -0.19 -3.51 5.08 -19.80 -0.10 -3.61 16 6 C -0.04 -0.61 9.30 22.25 0.21 -0.41 16 7 C -0.22 -4.29 9.04 22.37 0.20 -4.09 16 8 C 0.15 3.72 6.69 22.50 0.15 3.87 16 9 O -0.33 -9.88 10.14 -92.40 -0.94 -10.82 16 10 C 0.07 1.87 4.74 71.98 0.34 2.21 16 11 C -0.10 -3.66 5.52 30.59 0.17 -3.49 16 12 C -0.01 -0.25 4.04 29.85 0.12 -0.13 16 13 C -0.54 -30.68 9.66 25.60 0.25 -30.44 16 14 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 15 C 0.00 0.01 5.47 84.65 0.46 0.47 16 16 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 17 Si 0.96 42.38 27.47 68.60 1.88 44.27 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.24 -9.38 6.54 99.48 0.65 -8.73 16 21 C -0.20 -5.02 9.97 22.41 0.22 -4.80 16 22 C 0.13 2.95 7.24 22.36 0.16 3.11 16 23 F -0.14 -3.01 16.56 44.97 0.74 -2.27 16 24 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.39 2.43 7.32 -74.05 -0.54 1.89 16 28 H 0.17 1.38 6.40 -2.91 -0.02 1.36 16 29 H 0.15 2.57 6.30 -2.91 -0.02 2.56 16 30 H 0.08 1.98 7.66 -2.39 -0.02 1.96 16 31 H 0.08 2.00 7.66 -2.38 -0.02 1.98 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.03 1.28 7.20 -2.39 -0.02 1.27 16 35 H 0.03 1.24 7.57 -2.38 -0.02 1.22 16 36 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 37 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -68.83 314.67 3.52 -65.31 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.48 Total: 9.08 kcal Atomic # 6 Polarization: -39.21 SS G_CDS: 2.98 Total: -36.23 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.30 Total: -59.37 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -2.87 Total: -20.79 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.74 Total: -2.27 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 1.88 Total: 44.27 kcal Total: -68.83 3.52 -65.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235239838.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.657 kcal (2) G-P(sol) polarization free energy of solvation -68.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds