Wall clock time and date at job start Mon Mar 30 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47262 * 2 1 4 4 O 1.42903 * 109.46979 * 239.99320 * 2 1 3 5 5 C 1.50708 * 109.46986 * 119.99704 * 2 1 3 6 6 C 1.38245 * 119.95748 * 95.00099 * 5 2 1 7 7 C 1.38134 * 120.08224 * 179.97438 * 6 5 2 8 8 C 1.38766 * 119.99234 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.04429 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99774 * 0.02562 * 9 8 7 11 11 C 1.52994 * 109.47095 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47209 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47006 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99515 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00619 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47017 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47141 * 120.00115 * 17 15 13 20 20 H 1.48495 * 109.47492 * 240.00197 * 17 15 13 21 21 C 1.38675 * 119.91470 * 0.02562 * 8 7 6 22 22 C 1.38386 * 119.91988 * 359.97438 * 21 8 7 23 23 F 1.35102 * 119.99708 * 179.97438 * 22 21 8 24 24 H 1.09000 * 109.47392 * 300.00196 * 1 2 3 25 25 H 1.08991 * 109.47337 * 60.00488 * 1 2 3 26 26 H 1.09008 * 109.47281 * 180.02562 * 1 2 3 27 27 H 0.96695 * 114.00454 * 299.99703 * 4 2 1 28 28 H 1.08004 * 119.96005 * 0.02562 * 6 5 2 29 29 H 1.08004 * 120.00515 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47484 * 300.00349 * 10 9 8 31 31 H 1.09007 * 109.46552 * 60.00193 * 10 9 8 32 32 H 1.08998 * 109.47266 * 300.00515 * 11 10 9 33 33 H 1.09010 * 109.46959 * 60.00202 * 11 10 9 34 34 H 1.08996 * 109.46901 * 300.00431 * 12 11 10 35 35 H 1.09001 * 109.46576 * 60.00654 * 12 11 10 36 36 H 0.96995 * 120.00400 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03923 * 179.72849 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3608 -2.0518 1.1676 7 6 2.8220 -2.7053 2.2938 8 6 2.9564 -2.0151 3.4901 9 8 3.4096 -2.6572 4.5989 10 6 3.7294 -4.0430 4.4607 11 6 4.2194 -4.5896 5.8031 12 6 4.5625 -6.0733 5.6551 13 6 5.0446 -6.6117 6.9775 14 1 5.1003 -5.9610 7.8375 15 6 5.4146 -7.9352 7.0893 16 7 5.3473 -8.7276 6.0418 17 14 6.0128 -8.6025 8.7282 18 1 5.9958 -7.5164 9.7408 19 1 5.1202 -9.7042 9.1697 20 1 7.3974 -9.1176 8.5774 21 6 2.6268 -0.6695 3.5530 22 6 2.1652 -0.0184 2.4226 23 9 1.8431 1.2923 2.4823 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7210 -1.5954 -1.2328 28 1 2.2576 -2.5892 0.2365 29 1 3.0787 -3.7532 2.2430 30 1 2.8412 -4.5915 4.1471 31 1 4.5131 -4.1621 3.7124 32 1 5.1078 -4.0411 6.1163 33 1 3.4361 -4.4703 6.5517 34 1 3.6745 -6.6220 5.3417 35 1 5.3461 -6.1920 4.9067 36 1 5.6079 -9.6586 6.1204 37 1 2.7265 -0.1315 4.4841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235549127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:44 Heat of formation + Delta-G solvation = -131.961551 kcal Electronic energy + Delta-G solvation = -19463.430905 eV Core-core repulsion = 16119.825976 eV Total energy + Delta-G solvation = -3343.604929 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.13961 -40.26415 -38.55598 -36.54298 -34.10260 -32.12026 -31.57266 -30.84383 -28.89335 -27.02884 -24.10805 -23.83052 -22.47483 -21.25917 -20.33543 -18.65424 -17.40096 -17.11754 -16.29730 -16.10843 -16.06329 -15.63592 -15.30902 -15.04913 -14.50644 -14.41869 -14.11140 -13.49628 -13.21913 -12.90237 -12.84253 -12.41400 -12.21010 -11.99684 -11.95531 -11.38356 -11.33450 -11.03371 -10.68639 -10.63230 -10.55485 -10.49772 -9.85131 -9.60692 -9.20985 -9.05384 -8.44284 -8.26364 -6.09155 -4.11914 0.96067 1.08699 3.16590 3.26828 3.34674 3.37377 3.39291 4.02355 4.17888 4.29068 4.40278 4.54268 4.79859 4.82232 4.93242 5.15781 5.18953 5.27316 5.34807 5.41529 5.46409 5.58792 5.72414 5.75115 5.85059 5.87706 6.11241 6.17143 6.44212 6.45862 6.65813 6.90129 7.25080 7.43410 7.53588 7.63750 7.89181 8.30493 8.94485 9.52951 11.02354 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042969 B = 0.002911 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.481519 B = 9615.851422 C =10114.387409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.153 3.847 3 H 0.107 0.893 4 O -0.556 6.556 5 C -0.201 4.201 6 C -0.044 4.044 7 C -0.215 4.215 8 C 0.171 3.829 9 O -0.310 6.310 10 C 0.057 3.943 11 C -0.109 4.109 12 C 0.025 3.975 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.194 4.194 22 C 0.144 3.856 23 F -0.135 7.135 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.374 0.626 28 H 0.133 0.867 29 H 0.140 0.860 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 15.659 -11.964 21.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.094 3.906 3 H 0.125 0.875 4 O -0.362 6.362 5 C -0.203 4.203 6 C -0.062 4.062 7 C -0.234 4.234 8 C 0.124 3.876 9 O -0.223 6.223 10 C -0.017 4.017 11 C -0.147 4.147 12 C -0.012 4.012 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.213 4.213 22 C 0.125 3.875 23 F -0.113 7.113 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.223 0.777 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.071 0.929 37 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.625 16.166 -11.917 21.857 hybrid contribution 0.045 -0.998 0.949 1.378 sum -8.580 15.168 -10.968 20.591 Atomic orbital electron populations 1.22479 0.95291 1.02949 1.03024 1.20573 0.93027 0.95841 0.81189 0.87489 1.86629 1.77255 1.29229 1.43077 1.20382 1.08657 0.95776 0.95465 1.20478 0.95216 0.92420 0.98090 1.21421 1.07503 1.01770 0.92680 1.18752 0.91232 0.91118 0.86483 1.86152 1.78047 1.26461 1.31607 1.23318 0.99738 0.76726 1.01951 1.21745 1.00638 0.99523 0.92749 1.19053 0.96968 0.87439 0.97789 1.21210 1.43799 0.95063 0.95901 0.92373 1.25021 0.95640 0.97056 0.96722 1.69959 1.48346 1.05882 1.29240 0.86493 0.78442 0.78972 0.83867 1.19651 1.20944 1.20933 1.20257 1.08286 0.93505 0.99278 1.16947 0.99092 0.77924 0.93577 1.91487 1.90235 1.32625 1.96975 0.91316 0.91348 0.91963 0.77737 0.84938 0.84185 0.91996 0.91976 0.92069 0.92082 0.96278 0.96257 0.92921 0.83831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 9.52 37.16 0.35 -1.00 16 2 C 0.15 1.40 3.60 -27.88 -0.10 1.30 16 3 H 0.11 1.02 7.79 -51.93 -0.40 0.62 16 4 O -0.56 -5.12 12.99 -35.23 -0.46 -5.57 16 5 C -0.20 -2.16 5.07 -104.53 -0.53 -2.69 16 6 C -0.04 -0.45 9.30 -39.62 -0.37 -0.82 16 7 C -0.21 -2.63 9.04 -39.42 -0.36 -2.98 16 8 C 0.17 2.41 6.69 -39.22 -0.26 2.15 16 9 O -0.31 -5.01 10.14 -19.44 -0.20 -5.20 16 10 C 0.06 0.94 4.74 37.15 0.18 1.11 16 11 C -0.11 -2.17 5.52 -26.73 -0.15 -2.32 16 12 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 C -0.19 -2.51 9.97 -39.37 -0.39 -2.90 16 22 C 0.14 1.72 7.24 -39.44 -0.29 1.44 16 23 F -0.13 -1.57 16.56 2.25 0.04 -1.54 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 27 H 0.37 2.13 7.32 45.56 0.33 2.46 16 28 H 0.13 0.96 6.40 -52.48 -0.34 0.62 16 29 H 0.14 1.61 6.30 -52.48 -0.33 1.28 16 30 H 0.06 0.96 7.66 -51.93 -0.40 0.56 16 31 H 0.06 0.97 7.66 -51.93 -0.40 0.57 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -30.37 318.27 -7.02 -37.39 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.46 Total: -1.15 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.46 Total: -19.47 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.65 Total: -10.78 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.37 -7.02 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235549127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.568 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds