Wall clock time and date at job start Mon Mar 30 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47262 * 2 1 4 4 O 1.42903 * 109.46979 * 239.99320 * 2 1 3 5 5 C 1.50708 * 109.46986 * 119.99704 * 2 1 3 6 6 C 1.38245 * 119.95748 * 95.00099 * 5 2 1 7 7 C 1.38134 * 120.08224 * 179.97438 * 6 5 2 8 8 C 1.38766 * 119.99234 * 359.97438 * 7 6 5 9 9 O 1.35905 * 120.04429 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99774 * 0.02562 * 9 8 7 11 11 C 1.52994 * 109.47095 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47209 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47006 * 180.02562 * 12 11 10 14 14 H 1.07992 * 120.00030 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99515 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00619 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47017 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47141 * 120.00115 * 17 15 13 20 20 H 1.48495 * 109.47492 * 240.00197 * 17 15 13 21 21 C 1.38675 * 119.91470 * 0.02562 * 8 7 6 22 22 C 1.38386 * 119.91988 * 359.97438 * 21 8 7 23 23 F 1.35102 * 119.99708 * 179.97438 * 22 21 8 24 24 H 1.09000 * 109.47392 * 300.00196 * 1 2 3 25 25 H 1.08991 * 109.47337 * 60.00488 * 1 2 3 26 26 H 1.09008 * 109.47281 * 180.02562 * 1 2 3 27 27 H 0.96695 * 114.00454 * 299.99703 * 4 2 1 28 28 H 1.08004 * 119.96005 * 0.02562 * 6 5 2 29 29 H 1.08004 * 120.00515 * 180.02562 * 7 6 5 30 30 H 1.08998 * 109.47484 * 300.00349 * 10 9 8 31 31 H 1.09007 * 109.46552 * 60.00193 * 10 9 8 32 32 H 1.08998 * 109.47266 * 300.00515 * 11 10 9 33 33 H 1.09010 * 109.46959 * 60.00202 * 11 10 9 34 34 H 1.08996 * 109.46901 * 300.00431 * 12 11 10 35 35 H 1.09001 * 109.46576 * 60.00654 * 12 11 10 36 36 H 0.96995 * 120.00400 * 179.97438 * 16 15 13 37 37 H 1.08003 * 120.03923 * 179.72849 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6738 -1.1667 5 6 2.0323 -0.7104 1.2306 6 6 2.3608 -2.0518 1.1676 7 6 2.8220 -2.7053 2.2938 8 6 2.9564 -2.0151 3.4901 9 8 3.4096 -2.6572 4.5989 10 6 3.7294 -4.0430 4.4607 11 6 4.2194 -4.5896 5.8031 12 6 4.5625 -6.0733 5.6551 13 6 5.0446 -6.6117 6.9775 14 1 5.1003 -5.9610 7.8375 15 6 5.4146 -7.9352 7.0893 16 7 5.3473 -8.7276 6.0418 17 14 6.0128 -8.6025 8.7282 18 1 5.9958 -7.5164 9.7408 19 1 5.1202 -9.7042 9.1697 20 1 7.3974 -9.1176 8.5774 21 6 2.6268 -0.6695 3.5530 22 6 2.1652 -0.0184 2.4226 23 9 1.8431 1.2923 2.4823 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.7210 -1.5954 -1.2328 28 1 2.2576 -2.5892 0.2365 29 1 3.0787 -3.7532 2.2430 30 1 2.8412 -4.5915 4.1471 31 1 4.5131 -4.1621 3.7124 32 1 5.1078 -4.0411 6.1163 33 1 3.4361 -4.4703 6.5517 34 1 3.6745 -6.6220 5.3417 35 1 5.3461 -6.1920 4.9067 36 1 5.6079 -9.6586 6.1204 37 1 2.7265 -0.1315 4.4841 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235549127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:44 Heat of formation + Delta-G solvation = -150.480716 kcal Electronic energy + Delta-G solvation = -19464.233956 eV Core-core repulsion = 16119.825976 eV Total energy + Delta-G solvation = -3344.407980 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.06376 -41.28016 -39.48091 -37.46455 -35.94664 -33.76142 -32.55843 -31.83403 -29.81586 -28.70652 -25.54505 -24.80575 -23.67292 -22.25090 -21.89943 -19.68216 -18.61174 -18.13159 -17.92700 -17.30364 -17.07379 -16.67647 -16.48304 -16.09122 -15.85831 -15.47003 -15.00909 -14.92934 -14.41604 -13.98694 -13.79013 -13.71765 -13.65850 -13.20927 -12.93585 -12.79910 -12.67869 -12.45463 -12.20505 -11.94830 -11.87764 -11.56515 -11.45667 -11.23834 -11.21873 -10.57493 -9.98816 -9.25193 -8.22737 -6.33071 0.02455 0.15471 1.40369 1.41289 1.54094 2.01162 2.41421 2.44392 3.11501 3.21746 3.43370 3.48980 3.65533 3.92874 4.03990 4.06358 4.10183 4.19235 4.28348 4.35894 4.44231 4.71118 4.81825 4.85561 4.87797 4.90633 4.97403 5.08773 5.20752 5.23503 5.27988 5.47662 5.63283 5.66139 5.80725 6.18622 6.32344 6.74709 6.82555 7.36304 8.89291 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.042969 B = 0.002911 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.481519 B = 9615.851422 C =10114.387409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.155 3.845 3 H 0.102 0.898 4 O -0.566 6.566 5 C -0.194 4.194 6 C -0.039 4.039 7 C -0.218 4.218 8 C 0.145 3.855 9 O -0.326 6.326 10 C 0.069 3.931 11 C -0.098 4.098 12 C 0.029 3.971 13 C -0.545 4.545 14 H 0.059 0.941 15 C 0.002 3.998 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.278 1.278 21 C -0.202 4.202 22 C 0.136 3.864 23 F -0.135 7.135 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.390 0.610 28 H 0.168 0.832 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.002 0.998 35 H 0.002 0.998 36 H 0.265 0.735 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 16.011 -12.635 22.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.096 3.904 3 H 0.120 0.880 4 O -0.375 6.375 5 C -0.195 4.195 6 C -0.057 4.057 7 C -0.236 4.236 8 C 0.099 3.901 9 O -0.240 6.240 10 C -0.005 4.005 11 C -0.136 4.136 12 C -0.008 4.008 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.196 4.196 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.222 4.222 22 C 0.116 3.884 23 F -0.113 7.113 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.241 0.759 28 H 0.185 0.815 29 H 0.164 0.836 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.021 0.979 35 H 0.020 0.980 36 H 0.074 0.926 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.121 16.531 -12.596 22.697 hybrid contribution 0.161 -1.042 1.063 1.498 sum -8.960 15.489 -11.533 21.289 Atomic orbital electron populations 1.22437 0.93872 1.03682 1.03300 1.20560 0.94004 0.95381 0.80439 0.88042 1.86611 1.77541 1.30605 1.42723 1.20686 1.07266 0.96012 0.95564 1.20848 0.93760 0.92293 0.98790 1.21593 1.07320 1.02139 0.92596 1.18933 0.92974 0.91581 0.86605 1.86066 1.79017 1.25882 1.33011 1.22986 1.00358 0.77462 0.99742 1.21449 1.00590 0.96620 0.94930 1.18913 0.95459 0.90325 0.96145 1.21660 1.43920 0.95618 0.97084 0.92284 1.25920 0.95736 0.97433 1.00483 1.70069 1.49235 1.06317 1.31399 0.85414 0.77983 0.78373 0.79385 1.18816 1.20292 1.20325 1.20344 1.08549 0.93375 0.99899 1.17047 0.99443 0.78047 0.93853 1.91486 1.90242 1.32597 1.96996 0.91766 0.90368 0.91027 0.75930 0.81508 0.83568 0.91025 0.91198 0.92334 0.92243 0.97940 0.98012 0.92635 0.83713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.52 71.98 0.68 -1.54 16 2 C 0.16 2.50 3.60 29.85 0.11 2.61 16 3 H 0.10 1.76 7.79 -2.39 -0.02 1.74 16 4 O -0.57 -8.81 12.99 -148.98 -1.94 -10.75 16 5 C -0.19 -3.78 5.07 -19.80 -0.10 -3.88 16 6 C -0.04 -0.71 9.30 22.25 0.21 -0.50 16 7 C -0.22 -4.99 9.04 22.37 0.20 -4.79 16 8 C 0.15 4.00 6.69 22.50 0.15 4.15 16 9 O -0.33 -10.48 10.14 -92.48 -0.94 -11.41 16 10 C 0.07 2.25 4.74 71.98 0.34 2.59 16 11 C -0.10 -3.95 5.52 30.59 0.17 -3.78 16 12 C 0.03 1.45 4.97 29.85 0.15 1.60 16 13 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 14 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 17 Si 0.96 43.52 29.54 68.60 2.03 45.55 16 18 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 21 C -0.20 -5.16 9.97 22.41 0.22 -4.94 16 22 C 0.14 3.11 7.24 22.36 0.16 3.27 16 23 F -0.13 -3.04 16.56 44.97 0.74 -2.29 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 27 H 0.39 3.08 7.32 -74.06 -0.54 2.54 16 28 H 0.17 1.78 6.40 -2.91 -0.02 1.77 16 29 H 0.15 3.12 6.30 -2.91 -0.02 3.10 16 30 H 0.07 2.18 7.66 -2.39 -0.02 2.16 16 31 H 0.07 2.15 7.66 -2.38 -0.02 2.13 16 32 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 35 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -64.56 318.27 3.71 -60.85 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 0.53 Total: 7.55 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 2.99 Total: -34.77 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: 0.28 Total: -54.72 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -2.87 Total: -22.16 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.74 Total: -2.29 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -64.56 3.71 -60.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235549127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.631 kcal (2) G-P(sol) polarization free energy of solvation -64.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds