Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38290 * 120.00139 * 2 1 4 4 C 1.38259 * 120.21715 * 179.72560 * 3 2 1 5 5 C 1.38248 * 120.21177 * 0.25193 * 4 3 2 6 6 C 1.38729 * 119.99285 * 359.97438 * 5 4 3 7 7 N 1.39804 * 120.10843 * 180.02562 * 6 5 4 8 8 C 1.38721 * 119.99924 * 255.61151 * 7 6 5 9 9 C 1.39632 * 119.84976 * 6.39349 * 8 7 6 10 10 C 1.36293 * 120.15571 * 179.75550 * 9 8 7 11 11 C 1.40909 * 119.84198 * 0.54066 * 10 9 8 12 12 C 1.41102 * 120.14775 * 179.69371 * 11 10 9 13 13 H 1.07996 * 120.00303 * 24.24928 * 12 11 10 14 14 C 1.39832 * 119.99400 * 204.24712 * 12 11 10 15 15 N 1.30916 * 120.00298 * 18.09932 * 14 12 11 16 16 Si 1.86797 * 119.99575 * 198.09698 * 14 12 11 17 17 H 1.48499 * 109.47242 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47253 * 120.00380 * 16 14 12 19 19 H 1.48508 * 109.47309 * 240.00015 * 16 14 12 20 20 C 1.40907 * 119.70113 * 359.71237 * 11 10 9 21 21 C 1.36296 * 119.83792 * 0.02562 * 20 11 10 22 22 C 1.38651 * 120.00181 * 180.23263 * 2 1 3 23 23 N 1.39895 * 120.10215 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47076 * 90.00264 * 1 2 3 25 25 H 1.09000 * 109.47505 * 210.00012 * 1 2 3 26 26 H 1.09002 * 109.47459 * 330.00013 * 1 2 3 27 27 H 1.08005 * 119.88586 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.89347 * 180.27424 * 4 3 2 29 29 H 1.08002 * 120.00611 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00070 * 75.61457 * 7 6 5 31 31 H 1.08001 * 119.92073 * 359.97438 * 9 8 7 32 32 H 1.08007 * 120.07905 * 180.27434 * 10 9 8 33 33 H 0.97008 * 120.00223 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.08114 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.91838 * 180.02562 * 21 20 11 36 36 H 0.97000 * 120.00381 * 180.27822 * 23 22 2 37 37 H 0.96998 * 119.99630 * 0.27501 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1976 0.0000 4 6 3.5810 1.2028 0.0057 5 6 4.2811 0.0108 0.0062 6 6 3.5963 -1.1957 0.0015 7 7 4.3020 -2.4026 0.0026 8 6 4.3991 -3.1503 -1.1619 9 6 3.9079 -2.6336 -2.3625 10 6 4.0046 -3.3607 -3.5112 11 6 4.5917 -4.6414 -3.4831 12 6 4.6893 -5.4024 -4.6673 13 1 4.6936 -4.9086 -5.6278 14 6 4.7804 -6.7960 -4.5972 15 7 4.4263 -7.4209 -3.5027 16 14 5.4072 -7.7659 -6.0654 17 1 5.7397 -6.8314 -7.1706 18 1 6.6234 -8.5235 -5.6755 19 1 4.3572 -8.7140 -6.5172 20 6 5.0805 -5.1588 -2.2670 21 6 4.9821 -4.4186 -1.1268 22 6 2.2002 -1.2007 -0.0049 23 7 1.5029 -2.4135 -0.0093 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6565 2.1319 -0.0004 28 1 4.1157 2.1412 0.0102 29 1 5.3611 0.0187 0.0111 30 1 4.7236 -2.7173 0.8175 31 1 3.4535 -1.6540 -2.3816 32 1 3.6283 -2.9580 -4.4401 33 1 4.4899 -8.3877 -3.4539 34 1 5.5312 -6.1399 -2.2384 35 1 5.3567 -4.8138 -0.1941 36 1 1.9894 -3.2527 -0.0086 37 1 0.5330 -2.4152 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235935898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = 45.690626 kcal Electronic energy + Delta-G solvation = -19451.321120 eV Core-core repulsion = 16578.481743 eV Total energy + Delta-G solvation = -2872.839377 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.67552 -37.64760 -35.05280 -34.20268 -33.09566 -31.17389 -29.55853 -28.85836 -27.46159 -26.52370 -24.45559 -21.94462 -21.10714 -20.66088 -20.01855 -17.22182 -16.83568 -16.78741 -16.09295 -15.85648 -15.03259 -14.09469 -13.97305 -13.84865 -13.66066 -13.17937 -12.80096 -12.67218 -12.46628 -12.06459 -11.93524 -11.75008 -11.50931 -11.27291 -11.03708 -10.98861 -10.82286 -10.51924 -10.32965 -9.70644 -9.35288 -9.32389 -8.75127 -8.23819 -7.51020 -7.11554 -6.69153 -6.44724 -4.08017 1.65573 1.93418 2.86560 3.09797 3.13550 3.18951 3.31355 4.02533 4.09106 4.22653 4.36982 4.72727 5.08238 5.19518 5.43602 5.56412 5.67958 5.77074 5.79844 5.86819 6.07446 6.26176 6.30253 6.37153 6.56040 6.75686 6.87778 6.91584 7.05949 7.12419 7.18983 7.32024 7.60270 7.65327 7.76279 7.89605 8.12203 8.13943 8.32867 8.53931 8.69338 8.75877 9.02560 9.11638 10.32225 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.004274 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.451498 B = 6549.569311 C = 6683.486003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.172 4.172 3 C -0.084 4.084 4 C -0.175 4.175 5 C -0.090 4.090 6 C 0.100 3.900 7 N -0.709 5.709 8 C 0.077 3.923 9 C -0.137 4.137 10 C -0.192 4.192 11 C 0.080 3.920 12 C -0.465 4.465 13 H 0.073 0.927 14 C 0.075 3.925 15 N -0.805 5.805 16 Si 0.902 3.098 17 H -0.262 1.262 18 H -0.274 1.274 19 H -0.277 1.277 20 C -0.130 4.130 21 C -0.156 4.156 22 C 0.217 3.783 23 N -0.866 5.866 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.391 0.609 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.276 0.724 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.405 0.595 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 9.816 7.586 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.177 4.177 3 C -0.103 4.103 4 C -0.196 4.196 5 C -0.111 4.111 6 C 0.001 3.999 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.159 4.159 10 C -0.213 4.213 11 C 0.077 3.923 12 C -0.496 4.496 13 H 0.091 0.909 14 C -0.140 4.140 15 N -0.433 5.433 16 Si 0.727 3.273 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.202 1.202 20 C -0.149 4.149 21 C -0.178 4.178 22 C 0.109 3.891 23 N -0.404 5.404 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.225 0.775 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.137 0.863 35 H 0.105 0.895 36 H 0.235 0.765 37 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -4.365 9.657 7.569 13.023 hybrid contribution 0.236 -0.985 -0.409 1.092 sum -4.129 8.672 7.161 11.980 Atomic orbital electron populations 1.20531 0.91804 1.01769 1.01645 1.19204 0.95388 0.91705 1.11443 1.20670 0.94017 0.96346 0.99287 1.20676 0.93955 0.97274 1.07682 1.21259 0.99606 0.91636 0.98558 1.16941 0.88050 0.86868 1.08001 1.41113 1.61251 1.21407 1.10367 1.17340 1.06726 0.92146 0.85609 1.19881 1.05200 0.98787 0.92052 1.20562 1.06783 0.97798 0.96119 1.17522 0.90255 0.91228 0.93271 1.19422 1.45268 0.90936 0.93931 0.90861 1.25799 0.92901 0.98409 0.96918 1.69868 1.35542 1.09987 1.27862 0.86364 0.79148 0.79625 0.82137 1.18582 1.19911 1.20240 1.20897 1.02129 0.99961 0.91960 1.20047 1.06141 0.93654 0.97971 1.18061 0.91088 0.86270 0.93709 1.42559 1.08367 1.05786 1.83735 0.91920 0.92533 0.91945 0.86783 0.86835 0.86417 0.77469 0.89479 0.89227 0.91341 0.86284 0.89483 0.76483 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.56 36.00 0.34 -0.75 16 2 C -0.17 -2.38 5.89 -104.45 -0.62 -3.00 16 3 C -0.08 -1.10 9.69 -39.55 -0.38 -1.48 16 4 C -0.18 -2.36 10.04 -39.57 -0.40 -2.76 16 5 C -0.09 -1.37 9.97 -39.40 -0.39 -1.77 16 6 C 0.10 1.66 4.52 -83.53 -0.38 1.29 16 7 N -0.71 -12.49 4.74 -8.17 -0.04 -12.53 16 8 C 0.08 1.64 5.86 -83.70 -0.49 1.15 16 9 C -0.14 -3.15 9.11 -39.76 -0.36 -3.51 16 10 C -0.19 -4.82 9.74 -39.27 -0.38 -5.21 16 11 C 0.08 2.15 5.58 -106.79 -0.60 1.56 16 12 C -0.46 -12.59 9.03 -37.90 -0.34 -12.93 16 13 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 14 C 0.08 1.92 5.13 -17.35 -0.09 1.83 16 15 N -0.81 -21.08 10.94 55.54 0.61 -20.47 16 16 Si 0.90 19.11 29.60 -169.99 -5.03 14.08 16 17 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 19 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.13 -3.34 8.64 -39.27 -0.34 -3.68 16 21 C -0.16 -3.55 9.82 -39.76 -0.39 -3.95 16 22 C 0.22 3.41 6.28 -83.51 -0.52 2.89 16 23 N -0.87 -12.79 8.94 32.54 0.29 -12.49 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.11 1.19 8.06 -52.48 -0.42 0.77 16 28 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 30 H 0.39 6.19 8.83 -40.82 -0.36 5.83 16 31 H 0.09 1.95 6.75 -52.49 -0.35 1.59 16 32 H 0.09 2.17 8.06 -52.48 -0.42 1.74 16 33 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 34 H 0.12 3.19 6.14 -52.49 -0.32 2.87 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.41 6.64 7.51 -40.82 -0.31 6.33 16 37 H 0.39 4.84 6.83 -40.82 -0.28 4.56 16 LS Contribution 309.74 15.07 4.67 4.67 Total: -1.00 -27.95 309.74 -9.31 -37.26 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -4.47 Total: 19.80 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: -5.34 Total: -30.31 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.86 Total: -45.50 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.95 -9.31 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235935898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.952 kcal (2) G-P(sol) polarization free energy of solvation -27.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds