Wall clock time and date at job start Mon Mar 30 2020 07:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38290 * 120.00139 * 2 1 4 4 C 1.38259 * 120.21715 * 179.72560 * 3 2 1 5 5 C 1.38248 * 120.21177 * 0.25193 * 4 3 2 6 6 C 1.38729 * 119.99285 * 359.97438 * 5 4 3 7 7 N 1.39804 * 120.10843 * 180.02562 * 6 5 4 8 8 C 1.38721 * 119.99924 * 255.61151 * 7 6 5 9 9 C 1.39632 * 119.84976 * 6.39349 * 8 7 6 10 10 C 1.36293 * 120.15571 * 179.75550 * 9 8 7 11 11 C 1.40909 * 119.84198 * 0.54066 * 10 9 8 12 12 C 1.41102 * 120.14775 * 179.69371 * 11 10 9 13 13 H 1.07996 * 120.00303 * 24.24928 * 12 11 10 14 14 C 1.39832 * 119.99400 * 204.24712 * 12 11 10 15 15 N 1.30916 * 120.00298 * 18.09932 * 14 12 11 16 16 Si 1.86797 * 119.99575 * 198.09698 * 14 12 11 17 17 H 1.48499 * 109.47242 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47253 * 120.00380 * 16 14 12 19 19 H 1.48508 * 109.47309 * 240.00015 * 16 14 12 20 20 C 1.40907 * 119.70113 * 359.71237 * 11 10 9 21 21 C 1.36296 * 119.83792 * 0.02562 * 20 11 10 22 22 C 1.38651 * 120.00181 * 180.23263 * 2 1 3 23 23 N 1.39895 * 120.10215 * 359.97438 * 22 2 1 24 24 H 1.08997 * 109.47076 * 90.00264 * 1 2 3 25 25 H 1.09000 * 109.47505 * 210.00012 * 1 2 3 26 26 H 1.09002 * 109.47459 * 330.00013 * 1 2 3 27 27 H 1.08005 * 119.88586 * 359.97438 * 3 2 1 28 28 H 1.08001 * 119.89347 * 180.27424 * 4 3 2 29 29 H 1.08002 * 120.00611 * 180.02562 * 5 4 3 30 30 H 0.97003 * 120.00070 * 75.61457 * 7 6 5 31 31 H 1.08001 * 119.92073 * 359.97438 * 9 8 7 32 32 H 1.08007 * 120.07905 * 180.27434 * 10 9 8 33 33 H 0.97008 * 120.00223 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.08114 * 179.97438 * 20 11 10 35 35 H 1.08002 * 119.91838 * 180.02562 * 21 20 11 36 36 H 0.97000 * 120.00381 * 180.27822 * 23 22 2 37 37 H 0.96998 * 119.99630 * 0.27501 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1976 0.0000 4 6 3.5810 1.2028 0.0057 5 6 4.2811 0.0108 0.0062 6 6 3.5963 -1.1957 0.0015 7 7 4.3020 -2.4026 0.0026 8 6 4.3991 -3.1503 -1.1619 9 6 3.9079 -2.6336 -2.3625 10 6 4.0046 -3.3607 -3.5112 11 6 4.5917 -4.6414 -3.4831 12 6 4.6893 -5.4024 -4.6673 13 1 4.6936 -4.9086 -5.6278 14 6 4.7804 -6.7960 -4.5972 15 7 4.4263 -7.4209 -3.5027 16 14 5.4072 -7.7659 -6.0654 17 1 5.7397 -6.8314 -7.1706 18 1 6.6234 -8.5235 -5.6755 19 1 4.3572 -8.7140 -6.5172 20 6 5.0805 -5.1588 -2.2670 21 6 4.9821 -4.4186 -1.1268 22 6 2.2002 -1.2007 -0.0049 23 7 1.5029 -2.4135 -0.0093 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6565 2.1319 -0.0004 28 1 4.1157 2.1412 0.0102 29 1 5.3611 0.0187 0.0111 30 1 4.7236 -2.7173 0.8175 31 1 3.4535 -1.6540 -2.3816 32 1 3.6283 -2.9580 -4.4401 33 1 4.4899 -8.3877 -3.4539 34 1 5.5312 -6.1399 -2.2384 35 1 5.3567 -4.8138 -0.1941 36 1 1.9894 -3.2527 -0.0086 37 1 0.5330 -2.4152 -0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235935898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:09 Heat of formation + Delta-G solvation = 30.837270 kcal Electronic energy + Delta-G solvation = -19451.965210 eV Core-core repulsion = 16578.481743 eV Total energy + Delta-G solvation = -2873.483467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93343 -39.34794 -36.63622 -35.32276 -34.84542 -32.47118 -31.33556 -30.55140 -28.85164 -27.52721 -26.25744 -23.48018 -22.61461 -22.07041 -21.57479 -19.15314 -18.08670 -17.96093 -17.69551 -17.25290 -16.74778 -15.69531 -15.23392 -15.07951 -14.79711 -14.64009 -14.40165 -14.16350 -13.87893 -13.71297 -13.48271 -13.12680 -12.90880 -12.73118 -12.71218 -12.41203 -12.23767 -11.99133 -11.57299 -11.44337 -11.22904 -11.12989 -10.49967 -9.43856 -9.39704 -8.59025 -8.35590 -8.12105 -6.04222 0.51710 0.81339 1.07651 1.18264 1.40043 1.53746 1.56809 2.26445 2.80367 2.85873 3.00082 3.17509 3.82950 4.07388 4.22579 4.42610 4.48141 4.51546 4.52700 4.73192 4.86075 4.90792 4.95899 5.06099 5.17542 5.28589 5.33847 5.41291 5.50667 5.63008 5.72837 5.78845 5.82100 5.93499 6.11241 6.16541 6.40235 6.60349 6.70983 6.92632 6.99284 7.06355 7.20010 7.27052 8.45153 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033913 B = 0.004274 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.451498 B = 6549.569311 C = 6683.486003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.177 4.177 3 C -0.081 4.081 4 C -0.175 4.175 5 C -0.100 4.100 6 C 0.066 3.934 7 N -0.697 5.697 8 C 0.109 3.891 9 C -0.141 4.141 10 C -0.203 4.203 11 C 0.044 3.956 12 C -0.505 4.505 13 H 0.065 0.935 14 C 0.035 3.965 15 N -0.836 5.836 16 Si 0.975 3.025 17 H -0.262 1.262 18 H -0.265 1.265 19 H -0.268 1.268 20 C -0.144 4.144 21 C -0.163 4.163 22 C 0.200 3.800 23 N -0.866 5.866 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.120 0.880 30 H 0.400 0.600 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.283 0.717 34 H 0.103 0.897 35 H 0.111 0.889 36 H 0.396 0.604 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 11.374 8.396 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.182 4.182 3 C -0.100 4.100 4 C -0.195 4.195 5 C -0.120 4.120 6 C -0.032 4.032 7 N -0.328 5.328 8 C 0.011 3.989 9 C -0.163 4.163 10 C -0.223 4.223 11 C 0.042 3.958 12 C -0.536 4.536 13 H 0.083 0.917 14 C -0.177 4.177 15 N -0.464 5.464 16 Si 0.797 3.203 17 H -0.186 1.186 18 H -0.190 1.190 19 H -0.193 1.193 20 C -0.164 4.164 21 C -0.185 4.185 22 C 0.092 3.908 23 N -0.405 5.405 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.163 0.837 28 H 0.157 0.843 29 H 0.138 0.862 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.224 0.776 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.986 11.261 8.422 14.920 hybrid contribution 0.348 -1.242 -0.487 1.379 sum -4.637 10.019 7.935 13.596 Atomic orbital electron populations 1.20592 0.89743 1.03189 1.02183 1.19623 0.97063 0.91286 1.10254 1.21099 0.94073 0.97334 0.97478 1.21009 0.94484 0.97591 1.06466 1.21389 0.99958 0.91918 0.98785 1.17175 0.88648 0.86583 1.10797 1.40998 1.60941 1.21487 1.09369 1.17338 1.03537 0.91510 0.86468 1.19899 1.05600 0.98911 0.91936 1.20682 1.06973 0.97711 0.96977 1.17795 0.91833 0.92262 0.93946 1.19608 1.47955 0.92238 0.93792 0.91660 1.26569 0.92444 0.98783 0.99923 1.69914 1.36178 1.10623 1.29715 0.85270 0.78774 0.77957 0.78327 1.18629 1.18986 1.19267 1.20840 1.02935 0.99817 0.92821 1.20231 1.06234 0.93998 0.98065 1.18256 0.90965 0.87178 0.94387 1.42537 1.08906 1.05196 1.83877 0.91707 0.91951 0.89799 0.83687 0.84308 0.86217 0.76360 0.88752 0.89387 0.90636 0.87927 0.87060 0.77613 0.76855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 9.56 71.23 0.68 -1.19 16 2 C -0.18 -4.42 5.89 -19.76 -0.12 -4.54 16 3 C -0.08 -1.83 9.69 22.29 0.22 -1.61 16 4 C -0.17 -4.18 10.04 22.28 0.22 -3.96 16 5 C -0.10 -2.87 9.97 22.39 0.22 -2.65 16 6 C 0.07 2.09 4.52 38.32 0.17 2.27 16 7 N -0.70 -23.75 4.74 -179.75 -0.85 -24.60 16 8 C 0.11 4.59 5.86 38.73 0.23 4.82 16 9 C -0.14 -6.49 9.11 22.15 0.20 -6.29 16 10 C -0.20 -10.48 9.74 22.47 0.22 -10.26 16 11 C 0.04 2.48 5.58 -21.27 -0.12 2.36 16 12 C -0.50 -28.47 9.03 23.36 0.21 -28.26 16 13 H 0.07 3.62 7.91 -2.91 -0.02 3.59 16 14 C 0.04 1.85 5.13 85.22 0.44 2.28 16 15 N -0.84 -44.94 10.94 21.81 0.24 -44.70 16 16 Si 0.98 39.90 29.60 68.60 2.03 41.93 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 18 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 20 C -0.14 -7.65 8.64 22.47 0.19 -7.45 16 21 C -0.16 -7.44 9.82 22.15 0.22 -7.22 16 22 C 0.20 5.97 6.28 38.29 0.24 6.21 16 23 N -0.87 -24.69 8.94 -50.96 -0.46 -25.14 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 1.09 6.56 -2.39 -0.02 1.07 16 26 H 0.08 1.21 8.09 -2.39 -0.02 1.19 16 27 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 28 H 0.14 2.58 8.06 -2.91 -0.02 2.55 16 29 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.40 12.12 8.83 -92.71 -0.82 11.31 16 31 H 0.09 4.18 6.75 -2.91 -0.02 4.16 16 32 H 0.09 4.42 8.06 -2.91 -0.02 4.39 16 33 H 0.28 13.78 8.30 -92.70 -0.77 13.01 16 34 H 0.10 5.72 6.14 -2.91 -0.02 5.70 16 35 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.40 12.75 7.51 -92.71 -0.70 12.05 16 37 H 0.40 9.44 6.83 -92.71 -0.63 8.81 16 Total: -1.00 -61.49 309.74 3.16 -58.33 By element: Atomic # 1 Polarization: 50.71 SS G_CDS: -1.03 Total: 49.68 kcal Atomic # 6 Polarization: -58.72 SS G_CDS: 3.23 Total: -55.49 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -1.07 Total: -94.44 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Total: -61.49 3.16 -58.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235935898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.165 kcal (2) G-P(sol) polarization free energy of solvation -61.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds