Wall clock time and date at job start Mon Mar 30 2020 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38423 * 122.53768 * 2 1 4 4 C 1.33397 * 114.91674 * 180.02562 * 3 2 1 5 5 S 1.75881 * 109.59567 * 359.97438 * 4 3 2 6 6 C 1.33387 * 122.53738 * 180.02562 * 2 1 3 7 7 C 1.50698 * 125.20455 * 0.24561 * 6 2 1 8 8 H 1.09003 * 109.47120 * 346.67173 * 7 6 2 9 9 C 1.52999 * 109.46934 * 106.66774 * 7 6 2 10 10 N 1.46905 * 109.47221 * 184.35329 * 9 7 6 11 11 N 1.46906 * 109.47328 * 226.66753 * 7 6 2 12 12 C 1.46901 * 110.99668 * 45.05336 * 11 7 6 13 13 C 1.46898 * 110.99988 * 169.00786 * 11 7 6 14 14 H 1.09005 * 109.46758 * 58.29391 * 13 11 7 15 15 C 1.52996 * 109.47281 * 298.29549 * 13 11 7 16 16 C 1.50695 * 109.47185 * 178.29278 * 13 11 7 17 17 H 1.08005 * 119.99814 * 0.02562 * 16 13 11 18 18 C 1.37875 * 120.00096 * 179.97438 * 16 13 11 19 19 N 1.31518 * 120.00264 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99895 * 179.97438 * 18 16 13 21 21 H 1.48498 * 109.47025 * 60.00248 * 20 18 16 22 22 H 1.48500 * 109.46897 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47154 * 300.00004 * 20 18 16 24 24 H 1.09004 * 109.47075 * 269.98097 * 1 2 3 25 25 H 1.09001 * 109.47133 * 29.97997 * 1 2 3 26 26 H 1.08997 * 109.46960 * 149.98155 * 1 2 3 27 27 H 1.07993 * 122.54230 * 0.03656 * 3 2 1 28 28 H 1.07997 * 125.19865 * 180.02562 * 4 3 2 29 29 H 1.08993 * 109.47351 * 304.35460 * 9 7 6 30 30 H 1.09005 * 109.46898 * 64.35847 * 9 7 6 31 31 H 1.00907 * 110.99437 * 56.04866 * 10 9 7 32 32 H 1.00894 * 111.00117 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.47193 * 54.21879 * 12 11 7 34 34 H 1.09002 * 109.46445 * 174.21309 * 12 11 7 35 35 H 1.08992 * 109.47353 * 294.21602 * 12 11 7 36 36 H 1.09005 * 109.47096 * 299.99635 * 15 13 11 37 37 H 1.09000 * 109.47566 * 60.00163 * 15 13 11 38 38 H 1.08999 * 109.47539 * 180.02562 * 15 13 11 39 39 H 0.96996 * 120.00159 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9900 -0.0005 5 16 3.9386 -0.7305 -0.0004 6 6 2.2244 -1.1245 -0.0005 7 6 1.6536 -2.5192 -0.0064 8 1 0.5897 -2.4773 0.2268 9 6 1.8484 -3.1441 -1.3893 10 7 1.2006 -4.4621 -1.4268 11 7 2.3441 -3.3352 1.0013 12 6 2.4859 -2.6012 2.2659 13 6 1.6503 -4.6132 1.2093 14 1 1.5940 -5.1540 0.2645 15 6 0.2363 -4.3471 1.7295 16 6 2.4089 -5.4386 2.2162 17 1 3.3157 -5.0523 2.6579 18 6 1.9450 -6.6866 2.5745 19 7 0.8406 -7.1569 2.0371 20 14 2.8859 -7.7100 3.8222 21 1 2.9636 -6.9732 5.1091 22 1 2.1844 -9.0019 4.0325 23 1 4.2579 -7.9690 3.3163 24 1 -0.3633 -0.0003 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5141 27 1 1.7965 2.1463 0.0006 28 1 4.3078 1.7822 -0.0002 29 1 1.4024 -2.4985 -2.1458 30 1 2.9138 -3.2570 -1.5902 31 1 0.2246 -4.3924 -1.1803 32 1 1.3149 -4.8955 -2.3307 33 1 1.5077 -2.2491 2.5933 34 1 2.9068 -3.2617 3.0240 35 1 3.1485 -1.7484 2.1186 36 1 0.2925 -3.8063 2.6743 37 1 -0.3126 -3.7501 1.0012 38 1 -0.2784 -5.2953 1.8843 39 1 0.5144 -8.0349 2.2889 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250880013.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:48:13 Heat of formation + Delta-G solvation = 53.341004 kcal Electronic energy + Delta-G solvation = -19459.327093 eV Core-core repulsion = 16722.263413 eV Total energy + Delta-G solvation = -2737.063680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.90908 -37.05846 -33.81346 -32.45477 -30.99701 -29.34503 -27.64836 -26.06637 -25.02613 -23.84021 -22.75085 -21.21196 -18.90492 -18.23552 -16.92849 -15.84329 -15.57359 -14.89016 -14.73887 -14.51221 -14.07106 -13.74483 -13.20857 -12.99034 -12.90250 -12.56365 -12.14077 -11.97335 -11.77050 -11.60021 -11.43381 -11.15467 -10.93383 -10.81319 -10.63153 -10.54045 -10.43033 -10.06260 -9.83034 -9.62593 -8.91752 -8.32190 -8.28104 -7.97969 -7.49656 -6.92992 -5.82826 -3.82380 1.25747 1.95595 2.37789 2.88955 3.41444 3.45106 3.48834 4.54265 4.84007 5.03476 5.08361 5.36456 5.48538 5.50338 5.60611 5.64975 5.74157 5.76896 5.85081 5.99008 6.04847 6.24240 6.36662 6.44843 6.59007 6.64535 6.73680 6.86044 6.98897 7.08299 7.42124 7.59807 7.78837 7.88446 7.92080 8.01976 8.55107 8.69330 8.83849 9.24476 9.78694 11.23924 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026455 B = 0.006051 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.149105 B = 4626.500834 C = 4963.389899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.124 4.124 3 C -0.129 4.129 4 C -0.241 4.241 5 S 0.137 5.863 6 C -0.149 4.149 7 C 0.142 3.858 8 H 0.059 0.941 9 C 0.081 3.919 10 N -0.821 5.821 11 N -0.516 5.516 12 C 0.025 3.975 13 C 0.182 3.818 14 H 0.116 0.884 15 C -0.167 4.167 16 C -0.494 4.494 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.279 1.279 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.017 0.983 30 H 0.076 0.924 31 H 0.339 0.661 32 H 0.331 0.669 33 H 0.008 0.992 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.018 0.982 37 H 0.001 0.999 38 H 0.086 0.914 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 13.850 -6.760 15.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C -0.161 4.161 4 C -0.376 4.376 5 S 0.403 5.597 6 C -0.267 4.267 7 C 0.032 3.968 8 H 0.076 0.924 9 C -0.051 4.051 10 N -0.351 5.351 11 N -0.240 5.240 12 C -0.124 4.124 13 C 0.076 3.924 14 H 0.133 0.867 15 C -0.227 4.227 16 C -0.533 4.533 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.533 5.533 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.204 1.204 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.149 0.851 28 H 0.174 0.826 29 H 0.035 0.965 30 H 0.094 0.906 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.027 0.973 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.020 0.980 38 H 0.104 0.896 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.534 12.522 -6.374 14.278 hybrid contribution -2.229 1.018 0.516 2.504 sum 0.305 13.540 -5.857 14.755 Atomic orbital electron populations 1.20466 0.90338 1.02076 1.02057 1.18790 0.97149 0.91687 1.06052 1.19905 0.92924 0.98715 1.04519 1.25663 0.99671 1.00522 1.11775 1.84504 1.06024 0.97628 1.71497 1.24478 0.95974 0.98689 1.07570 1.20210 0.96460 0.85750 0.94424 0.92365 1.21752 1.00104 0.89048 0.94199 1.58905 1.19862 1.21834 1.34453 1.62596 1.50204 1.04689 1.06545 1.22411 0.98368 0.97809 0.93803 1.20177 0.87294 0.84248 1.00636 0.86700 1.22401 1.02013 1.01446 0.96802 1.21185 1.08670 1.00458 1.22955 0.92635 1.24834 0.95187 0.97542 0.96632 1.69878 1.21598 1.18074 1.43785 0.86717 0.80119 0.79488 0.81911 1.20733 1.21596 1.20447 0.91599 0.91987 0.91783 0.85133 0.82557 0.96457 0.90558 0.84755 0.85601 0.97340 0.90527 0.93774 0.96331 0.98019 0.89551 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.61 36.01 0.35 -0.78 16 2 C -0.12 -1.80 5.80 -106.25 -0.62 -2.42 16 3 C -0.13 -1.67 9.98 -41.21 -0.41 -2.08 16 4 C -0.24 -3.05 11.23 29.04 0.33 -2.73 16 5 S 0.14 2.06 21.54 -107.50 -2.32 -0.26 16 6 C -0.15 -2.40 3.89 -36.00 -0.14 -2.54 16 7 C 0.14 2.57 1.89 -68.86 -0.13 2.44 16 8 H 0.06 1.10 4.30 -51.93 -0.22 0.87 16 9 C 0.08 1.33 6.37 -3.82 -0.02 1.31 16 10 N -0.82 -13.93 6.21 -10.37 -0.06 -13.99 16 11 N -0.52 -11.07 4.53 -229.69 -1.04 -12.11 16 12 C 0.03 0.53 8.06 60.07 0.48 1.01 16 13 C 0.18 4.48 1.97 -68.87 -0.14 4.34 16 14 H 0.12 2.97 4.91 -51.93 -0.26 2.71 16 15 C -0.17 -4.03 8.32 37.16 0.31 -3.72 16 16 C -0.49 -13.67 7.80 -34.44 -0.27 -13.94 16 17 H 0.06 1.56 6.57 -52.48 -0.35 1.22 16 18 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 19 N -0.89 -25.46 11.32 55.43 0.63 -24.83 16 20 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 26 H 0.06 0.82 6.89 -51.93 -0.36 0.46 16 27 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.16 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.34 5.64 8.73 -39.29 -0.34 5.30 16 32 H 0.33 4.75 9.08 -39.29 -0.36 4.39 16 33 H 0.01 0.17 6.88 -51.93 -0.36 -0.18 16 34 H 0.08 1.75 6.05 -51.93 -0.31 1.43 16 35 H 0.04 0.84 5.60 -51.93 -0.29 0.55 16 36 H 0.02 0.44 6.68 -51.93 -0.35 0.09 16 37 H 0.00 0.02 5.98 -51.93 -0.31 -0.29 16 38 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -29.16 309.41 -8.99 -38.16 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.49 Total: 9.15 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -0.36 Total: -17.59 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.48 Total: -50.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.32 Total: -0.26 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.16 -8.99 -38.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250880013.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.498 kcal (2) G-P(sol) polarization free energy of solvation -29.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds