Wall clock time and date at job start Mon Mar 30 2020 07:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36454 * 119.90861 * 2 1 4 4 C 1.40812 * 119.80948 * 179.97438 * 3 2 1 5 5 C 1.41218 * 120.17816 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00239 * 150.16117 * 5 4 3 7 7 C 1.39890 * 119.99794 * 330.15205 * 5 4 3 8 8 N 1.30884 * 119.99854 * 161.71102 * 7 5 4 9 9 Si 1.86803 * 120.00093 * 341.71395 * 7 5 4 10 10 H 1.48498 * 109.46817 * 95.41461 * 9 7 5 11 11 H 1.48494 * 109.46997 * 215.41307 * 9 7 5 12 12 H 1.48500 * 109.46981 * 335.41355 * 9 7 5 13 13 C 1.40861 * 119.64342 * 359.70809 * 4 3 2 14 14 C 1.36418 * 119.80582 * 0.56603 * 13 4 3 15 15 C 1.39297 * 119.90210 * 179.97438 * 2 1 3 16 16 O 1.35669 * 119.82141 * 0.02610 * 15 2 1 17 17 C 1.42902 * 117.00072 * 180.02562 * 16 15 2 18 18 C 1.50704 * 109.46811 * 179.97438 * 17 16 15 19 19 C 1.38233 * 119.99750 * 269.72283 * 18 17 16 20 20 C 1.38243 * 119.99470 * 179.77024 * 19 18 17 21 21 C 1.38224 * 120.00221 * 0.50898 * 20 19 18 22 22 C 1.38238 * 120.00175 * 359.74482 * 21 20 19 23 23 C 1.38234 * 119.99880 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.46886 * 270.02391 * 1 2 3 25 25 H 1.08997 * 109.46545 * 30.02725 * 1 2 3 26 26 H 1.08999 * 109.47083 * 150.02073 * 1 2 3 27 27 H 1.07994 * 120.09604 * 359.95609 * 3 2 1 28 28 H 0.96999 * 119.99839 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.09533 * 180.31766 * 13 4 3 30 30 H 1.08007 * 119.90271 * 179.73137 * 14 13 4 31 31 H 1.08999 * 109.46809 * 299.99687 * 17 16 15 32 32 H 1.09000 * 109.47110 * 59.99601 * 17 16 15 33 33 H 1.07995 * 120.00459 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.99365 * 180.23225 * 20 19 18 35 35 H 1.07997 * 120.00403 * 179.72591 * 21 20 19 36 36 H 1.07993 * 120.00365 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00580 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.1828 0.0000 4 6 3.5956 1.1804 0.0005 5 6 4.3076 2.3999 0.0000 6 1 5.2803 2.4576 0.4657 7 6 3.7530 3.5333 -0.6039 8 7 4.2134 4.7228 -0.3103 9 14 2.3552 3.3492 -1.8294 10 1 1.0575 3.5328 -1.1313 11 1 2.4932 4.3738 -2.8953 12 1 2.4038 1.9945 -2.4358 13 6 4.2901 -0.0451 0.0073 14 6 3.5948 -1.2187 0.0016 15 6 2.2015 -1.2075 0.0005 16 8 1.5175 -2.3792 0.0005 17 6 2.2900 -3.5814 0.0017 18 6 1.3661 -4.7720 0.0021 19 6 0.9465 -5.3208 1.1995 20 6 0.0953 -6.4100 1.1998 21 6 -0.3279 -6.9569 0.0030 22 6 0.0959 -6.4114 -1.1944 23 6 0.9433 -5.3193 -1.1949 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6476 2.1181 -0.0007 28 1 3.8286 5.5087 -0.7288 29 1 5.3700 -0.0554 0.0130 30 1 4.1258 -2.1592 0.0024 31 1 2.9193 -3.6097 -0.8878 32 1 2.9180 -3.6089 0.8921 33 1 1.2804 -4.8961 2.1346 34 1 -0.2355 -6.8364 2.1353 35 1 -0.9894 -7.8106 0.0032 36 1 -0.2344 -6.8389 -2.1295 37 1 1.2748 -4.8933 -2.1303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258129640.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:52 Heat of formation + Delta-G solvation = -2.500791 kcal Electronic energy + Delta-G solvation = -19107.796118 eV Core-core repulsion = 16200.574253 eV Total energy + Delta-G solvation = -2907.221864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.61827 -38.75013 -36.61853 -33.52882 -32.19653 -31.65371 -30.98530 -29.72564 -26.46924 -25.96235 -24.48612 -22.65552 -21.99170 -20.73611 -19.84521 -17.44069 -17.12325 -16.83778 -15.66622 -15.51658 -15.10429 -14.71153 -14.27514 -13.76706 -13.48128 -13.27546 -13.06329 -12.84502 -12.77754 -12.62383 -12.15820 -11.93861 -11.48734 -11.43752 -11.25258 -11.05441 -10.85930 -10.71873 -10.26637 -10.03901 -9.91034 -9.50101 -9.07203 -9.00314 -8.87242 -7.73229 -7.12763 -6.89922 -4.36798 1.19023 1.31986 2.55331 2.62212 3.13153 3.22824 3.34784 3.56117 4.01714 4.25248 4.47245 4.76801 4.83882 4.94029 5.06053 5.28006 5.37651 5.40139 5.57371 5.60435 5.74963 5.87957 5.91238 5.96704 6.11088 6.31314 6.33196 6.37040 6.39472 6.56400 6.56660 6.61486 6.82568 6.89575 6.97767 7.33758 7.41306 7.55189 7.83618 7.95299 8.30269 8.41075 8.70713 8.84721 10.13210 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.038847 B = 0.004047 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.612419 B = 6916.584041 C = 7185.154136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.066 4.066 3 C -0.208 4.208 4 C 0.074 3.926 5 C -0.450 4.450 6 H 0.089 0.911 7 C 0.084 3.916 8 N -0.814 5.814 9 Si 0.906 3.094 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.244 1.244 13 C -0.182 4.182 14 C -0.155 4.155 15 C -0.008 4.008 16 O -0.316 6.316 17 C 0.105 3.895 18 C -0.082 4.082 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.119 4.119 22 C -0.125 4.125 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.284 0.716 29 H 0.103 0.897 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.155 -17.152 -0.639 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.067 4.067 3 C -0.227 4.227 4 C 0.071 3.929 5 C -0.479 4.479 6 H 0.107 0.893 7 C -0.134 4.134 8 N -0.439 5.439 9 Si 0.733 3.267 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.168 1.168 13 C -0.201 4.201 14 C -0.173 4.173 15 C -0.051 4.051 16 O -0.232 6.232 17 C 0.029 3.971 18 C -0.082 4.082 19 C -0.116 4.116 20 C -0.143 4.143 21 C -0.137 4.137 22 C -0.143 4.143 23 C -0.117 4.117 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.094 0.906 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.298 -16.880 -0.648 18.401 hybrid contribution -0.235 0.102 -0.494 0.556 sum -7.533 -16.778 -1.141 18.427 Atomic orbital electron populations 1.20557 0.92818 1.01241 1.01122 1.18552 0.94507 0.90602 1.03050 1.20560 0.94428 0.95413 1.12276 1.17700 0.91249 0.93260 0.90661 1.19364 1.05031 0.91483 1.32019 0.89281 1.26108 0.96701 0.94270 0.96293 1.69724 1.39079 0.99069 1.36005 0.86384 0.80515 0.79679 0.80117 1.19594 1.21854 1.16767 1.20617 0.98216 0.91690 1.09618 1.20546 0.92547 0.98015 1.06234 1.18296 0.89961 0.84005 1.12830 1.85899 1.34695 1.11467 1.91179 1.21302 0.92124 0.82249 1.01387 1.19703 0.98996 0.96026 0.93524 1.21124 0.96933 0.95819 0.97749 1.21134 0.98283 0.96789 0.98130 1.21161 0.99926 0.99969 0.92680 1.21133 0.98325 0.96760 0.98128 1.21124 0.96961 0.95806 0.97764 0.92391 0.92954 0.92108 0.87515 0.90602 0.87907 0.88125 0.92177 0.92146 0.85825 0.86019 0.86198 0.86030 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.92 9.78 36.01 0.35 -1.57 16 2 C -0.07 -1.50 5.86 -104.87 -0.61 -2.12 16 3 C -0.21 -5.10 6.75 -39.25 -0.26 -5.36 16 4 C 0.07 1.90 5.10 -106.80 -0.55 1.36 16 5 C -0.45 -12.30 9.56 -37.83 -0.36 -12.66 16 6 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.08 2.24 5.40 -17.34 -0.09 2.14 16 8 N -0.81 -22.00 13.93 55.54 0.77 -21.23 16 9 Si 0.91 21.10 24.52 -169.99 -4.17 16.94 16 10 H -0.27 -6.07 6.70 56.52 0.38 -5.70 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.24 -5.86 6.87 56.52 0.39 -5.47 16 13 C -0.18 -4.25 9.75 -39.25 -0.38 -4.63 16 14 C -0.15 -3.27 8.96 -39.83 -0.36 -3.63 16 15 C -0.01 -0.17 6.69 -38.78 -0.26 -0.43 16 16 O -0.32 -6.08 9.14 -18.71 -0.17 -6.25 16 17 C 0.11 1.60 4.86 36.01 0.17 1.78 16 18 C -0.08 -1.12 5.51 -104.62 -0.58 -1.69 16 19 C -0.10 -1.20 9.70 -39.58 -0.38 -1.58 16 20 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.12 -1.18 10.05 -39.59 -0.40 -1.57 16 22 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 23 C -0.10 -1.21 9.70 -39.58 -0.38 -1.59 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.05 0.94 8.08 -51.93 -0.42 0.53 16 26 H 0.06 1.10 7.52 -51.93 -0.39 0.71 16 27 H 0.11 2.62 4.73 -52.49 -0.25 2.37 16 28 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 29 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 30 H 0.10 1.81 6.27 -52.48 -0.33 1.48 16 31 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 32 H 0.06 0.87 7.59 -51.93 -0.39 0.48 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 310.63 15.07 4.68 4.68 Total: -1.00 -28.89 310.63 -8.50 -37.39 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.73 Total: 3.44 kcal Atomic # 6 Polarization: -30.09 SS G_CDS: -4.89 Total: -34.98 kcal Atomic # 7 Polarization: -22.00 SS G_CDS: 0.77 Total: -21.23 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.17 Total: -6.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.17 Total: 16.94 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.89 -8.50 -37.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258129640.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.894 kcal (2) G-P(sol) polarization free energy of solvation -28.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds