Wall clock time and date at job start Mon Mar 30 2020 07:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.36454 * 119.90861 * 2 1 4 4 C 1.40812 * 119.80948 * 179.97438 * 3 2 1 5 5 C 1.41218 * 120.17816 * 179.97438 * 4 3 2 6 6 H 1.08004 * 120.00239 * 150.16117 * 5 4 3 7 7 C 1.39890 * 119.99794 * 330.15205 * 5 4 3 8 8 N 1.30884 * 119.99854 * 161.71102 * 7 5 4 9 9 Si 1.86803 * 120.00093 * 341.71395 * 7 5 4 10 10 H 1.48498 * 109.46817 * 95.41461 * 9 7 5 11 11 H 1.48494 * 109.46997 * 215.41307 * 9 7 5 12 12 H 1.48500 * 109.46981 * 335.41355 * 9 7 5 13 13 C 1.40861 * 119.64342 * 359.70809 * 4 3 2 14 14 C 1.36418 * 119.80582 * 0.56603 * 13 4 3 15 15 C 1.39297 * 119.90210 * 179.97438 * 2 1 3 16 16 O 1.35669 * 119.82141 * 0.02610 * 15 2 1 17 17 C 1.42902 * 117.00072 * 180.02562 * 16 15 2 18 18 C 1.50704 * 109.46811 * 179.97438 * 17 16 15 19 19 C 1.38233 * 119.99750 * 269.72283 * 18 17 16 20 20 C 1.38243 * 119.99470 * 179.77024 * 19 18 17 21 21 C 1.38224 * 120.00221 * 0.50898 * 20 19 18 22 22 C 1.38238 * 120.00175 * 359.74482 * 21 20 19 23 23 C 1.38234 * 119.99880 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.46886 * 270.02391 * 1 2 3 25 25 H 1.08997 * 109.46545 * 30.02725 * 1 2 3 26 26 H 1.08999 * 109.47083 * 150.02073 * 1 2 3 27 27 H 1.07994 * 120.09604 * 359.95609 * 3 2 1 28 28 H 0.96999 * 119.99839 * 180.02562 * 8 7 5 29 29 H 1.07997 * 120.09533 * 180.31766 * 13 4 3 30 30 H 1.08007 * 119.90271 * 179.73137 * 14 13 4 31 31 H 1.08999 * 109.46809 * 299.99687 * 17 16 15 32 32 H 1.09000 * 109.47110 * 59.99601 * 17 16 15 33 33 H 1.07995 * 120.00459 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.99365 * 180.23225 * 20 19 18 35 35 H 1.07997 * 120.00403 * 179.72591 * 21 20 19 36 36 H 1.07993 * 120.00365 * 179.97438 * 22 21 20 37 37 H 1.08000 * 120.00580 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1875 1.1828 0.0000 4 6 3.5956 1.1804 0.0005 5 6 4.3076 2.3999 0.0000 6 1 5.2803 2.4576 0.4657 7 6 3.7530 3.5333 -0.6039 8 7 4.2134 4.7228 -0.3103 9 14 2.3552 3.3492 -1.8294 10 1 1.0575 3.5328 -1.1313 11 1 2.4932 4.3738 -2.8953 12 1 2.4038 1.9945 -2.4358 13 6 4.2901 -0.0451 0.0073 14 6 3.5948 -1.2187 0.0016 15 6 2.2015 -1.2075 0.0005 16 8 1.5175 -2.3792 0.0005 17 6 2.2900 -3.5814 0.0017 18 6 1.3661 -4.7720 0.0021 19 6 0.9465 -5.3208 1.1995 20 6 0.0953 -6.4100 1.1998 21 6 -0.3279 -6.9569 0.0030 22 6 0.0959 -6.4114 -1.1944 23 6 0.9433 -5.3193 -1.1949 24 1 -0.3633 0.0004 1.0276 25 1 -0.3632 0.8897 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6476 2.1181 -0.0007 28 1 3.8286 5.5087 -0.7288 29 1 5.3700 -0.0554 0.0130 30 1 4.1258 -2.1592 0.0024 31 1 2.9193 -3.6097 -0.8878 32 1 2.9180 -3.6089 0.8921 33 1 1.2804 -4.8961 2.1346 34 1 -0.2355 -6.8364 2.1353 35 1 -0.9894 -7.8106 0.0032 36 1 -0.2344 -6.8389 -2.1295 37 1 1.2748 -4.8933 -2.1303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258129640.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:51 Heat of formation + Delta-G solvation = -16.844550 kcal Electronic energy + Delta-G solvation = -19108.418110 eV Core-core repulsion = 16200.574253 eV Total energy + Delta-G solvation = -2907.843857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.97707 -39.95888 -38.24023 -35.40665 -33.73556 -32.89929 -31.80470 -31.53626 -27.70432 -27.63527 -26.27034 -23.48551 -23.40838 -22.07398 -21.55642 -19.26933 -18.80088 -17.78397 -17.08082 -16.83007 -16.66957 -15.99939 -15.45275 -15.32660 -14.93592 -14.81804 -14.34584 -14.25686 -14.19637 -13.89452 -13.69035 -13.37929 -13.10069 -13.05676 -12.63814 -12.56572 -12.14087 -11.95225 -11.93670 -11.78818 -11.60781 -11.28845 -10.94213 -9.83385 -9.77921 -9.52987 -8.94342 -8.87072 -6.38574 0.30399 0.49001 0.72886 0.78036 1.25778 1.38422 1.48307 2.12921 2.48917 2.56959 3.09097 3.44373 3.81445 3.88431 4.09128 4.15074 4.18674 4.29287 4.30244 4.37006 4.53308 4.61256 4.64557 4.74526 4.82489 4.85929 4.98016 5.04833 5.07294 5.14812 5.14981 5.51617 5.53872 5.59528 5.61124 5.66355 5.71975 5.93159 6.08544 6.12606 6.31885 6.58526 6.80852 6.93820 8.22092 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.038847 B = 0.004047 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.612419 B = 6916.584041 C = 7185.154136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.085 4.085 3 C -0.214 4.214 4 C 0.050 3.950 5 C -0.486 4.486 6 H 0.056 0.944 7 C 0.048 3.952 8 N -0.855 5.855 9 Si 0.958 3.042 10 H -0.256 1.256 11 H -0.277 1.277 12 H -0.256 1.256 13 C -0.190 4.190 14 C -0.154 4.154 15 C 0.012 3.988 16 O -0.321 6.321 17 C 0.100 3.900 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.128 4.128 23 C -0.113 4.113 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.292 0.708 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.520 -20.269 -1.131 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 C -0.233 4.233 4 C 0.048 3.952 5 C -0.516 4.516 6 H 0.075 0.925 7 C -0.165 4.165 8 N -0.482 5.482 9 Si 0.782 3.218 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.180 1.180 13 C -0.209 4.209 14 C -0.173 4.173 15 C -0.032 4.032 16 O -0.237 6.237 17 C 0.025 3.975 18 C -0.106 4.106 19 C -0.130 4.130 20 C -0.146 4.146 21 C -0.134 4.134 22 C -0.146 4.146 23 C -0.131 4.131 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.144 0.856 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.163 0.837 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.664 -20.013 -1.132 22.253 hybrid contribution 0.448 0.711 -0.275 0.884 sum -9.216 -19.302 -1.407 21.435 Atomic orbital electron populations 1.20577 0.90224 1.02164 1.02350 1.18961 0.96653 0.90320 1.02659 1.20622 0.93980 0.96258 1.12489 1.17845 0.92094 0.93392 0.91901 1.19347 1.04545 0.93298 1.34373 0.92539 1.26730 0.98736 0.93756 0.97281 1.69751 1.41025 0.99757 1.37702 0.85592 0.78613 0.79124 0.78482 1.18145 1.20320 1.18015 1.20821 0.98860 0.91871 1.09353 1.20851 0.92742 0.98650 1.05028 1.18503 0.90177 0.84997 1.09557 1.85915 1.35500 1.11748 1.90559 1.21560 0.92728 0.81190 1.02046 1.19654 1.00298 0.96005 0.94663 1.21296 0.97589 0.96693 0.97465 1.21469 0.97432 0.96064 0.99638 1.21581 0.99401 1.00298 0.92118 1.21466 0.97481 0.96037 0.99635 1.21294 0.97637 0.96698 0.97477 0.90929 0.92081 0.91135 0.87865 0.89764 0.87299 0.84727 0.91452 0.91378 0.85566 0.83627 0.83233 0.83655 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.44 9.78 71.24 0.70 -2.74 16 2 C -0.09 -3.72 5.86 -20.02 -0.12 -3.84 16 3 C -0.21 -10.48 6.75 22.48 0.15 -10.32 16 4 C 0.05 2.62 5.10 -21.28 -0.11 2.51 16 5 C -0.49 -27.86 9.56 23.40 0.22 -27.64 16 6 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 7 C 0.05 2.66 5.40 85.23 0.46 3.12 16 8 N -0.85 -48.01 13.93 21.82 0.30 -47.71 16 9 Si 0.96 43.90 24.52 68.60 1.68 45.58 16 10 H -0.26 -11.04 6.70 99.48 0.67 -10.37 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16 13 C -0.19 -8.88 9.75 22.49 0.22 -8.66 16 14 C -0.15 -6.28 8.96 22.11 0.20 -6.08 16 15 C 0.01 0.48 6.69 22.79 0.15 0.64 16 16 O -0.32 -11.56 9.14 -89.85 -0.82 -12.38 16 17 C 0.10 2.82 4.86 71.24 0.35 3.16 16 18 C -0.11 -2.64 5.51 -19.86 -0.11 -2.75 16 19 C -0.11 -2.48 9.70 22.27 0.22 -2.26 16 20 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16 21 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 23 C -0.11 -2.50 9.70 22.27 0.22 -2.29 16 24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 26 H 0.07 2.36 7.52 -2.39 -0.02 2.34 16 27 H 0.10 5.04 4.73 -2.91 -0.01 5.03 16 28 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16 29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 30 H 0.14 4.49 6.27 -2.91 -0.02 4.47 16 31 H 0.07 1.80 7.59 -2.39 -0.02 1.78 16 32 H 0.07 1.81 7.59 -2.39 -0.02 1.79 16 33 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16 34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 35 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -63.51 310.63 5.38 -58.13 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: 1.00 Total: 19.21 kcal Atomic # 6 Polarization: -66.05 SS G_CDS: 3.22 Total: -62.83 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.30 Total: -47.71 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: -0.82 Total: -12.38 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.58 kcal Total: -63.51 5.38 -58.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258129640.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.290 kcal (2) G-P(sol) polarization free energy of solvation -63.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds