Wall clock time and date at job start Mon Mar 30 2020 07:10:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.36454 * 119.90861 * 2 1
4 4 C 1.40812 * 119.80948 * 179.97438 * 3 2 1
5 5 C 1.41218 * 120.17816 * 179.97438 * 4 3 2
6 6 H 1.08004 * 120.00239 * 150.16117 * 5 4 3
7 7 C 1.39890 * 119.99794 * 330.15205 * 5 4 3
8 8 N 1.30884 * 119.99854 * 161.71102 * 7 5 4
9 9 Si 1.86803 * 120.00093 * 341.71395 * 7 5 4
10 10 H 1.48498 * 109.46817 * 95.41461 * 9 7 5
11 11 H 1.48494 * 109.46997 * 215.41307 * 9 7 5
12 12 H 1.48500 * 109.46981 * 335.41355 * 9 7 5
13 13 C 1.40861 * 119.64342 * 359.70809 * 4 3 2
14 14 C 1.36418 * 119.80582 * 0.56603 * 13 4 3
15 15 C 1.39297 * 119.90210 * 179.97438 * 2 1 3
16 16 O 1.35669 * 119.82141 * 0.02610 * 15 2 1
17 17 C 1.42902 * 117.00072 * 180.02562 * 16 15 2
18 18 C 1.50704 * 109.46811 * 179.97438 * 17 16 15
19 19 C 1.38233 * 119.99750 * 269.72283 * 18 17 16
20 20 C 1.38243 * 119.99470 * 179.77024 * 19 18 17
21 21 C 1.38224 * 120.00221 * 0.50898 * 20 19 18
22 22 C 1.38238 * 120.00175 * 359.74482 * 21 20 19
23 23 C 1.38234 * 119.99880 * 0.02562 * 22 21 20
24 24 H 1.08993 * 109.46886 * 270.02391 * 1 2 3
25 25 H 1.08997 * 109.46545 * 30.02725 * 1 2 3
26 26 H 1.08999 * 109.47083 * 150.02073 * 1 2 3
27 27 H 1.07994 * 120.09604 * 359.95609 * 3 2 1
28 28 H 0.96999 * 119.99839 * 180.02562 * 8 7 5
29 29 H 1.07997 * 120.09533 * 180.31766 * 13 4 3
30 30 H 1.08007 * 119.90271 * 179.73137 * 14 13 4
31 31 H 1.08999 * 109.46809 * 299.99687 * 17 16 15
32 32 H 1.09000 * 109.47110 * 59.99601 * 17 16 15
33 33 H 1.07995 * 120.00459 * 0.02562 * 19 18 17
34 34 H 1.08000 * 119.99365 * 180.23225 * 20 19 18
35 35 H 1.07997 * 120.00403 * 179.72591 * 21 20 19
36 36 H 1.07993 * 120.00365 * 179.97438 * 22 21 20
37 37 H 1.08000 * 120.00580 * 179.97438 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1875 1.1828 0.0000
4 6 3.5956 1.1804 0.0005
5 6 4.3076 2.3999 0.0000
6 1 5.2803 2.4576 0.4657
7 6 3.7530 3.5333 -0.6039
8 7 4.2134 4.7228 -0.3103
9 14 2.3552 3.3492 -1.8294
10 1 1.0575 3.5328 -1.1313
11 1 2.4932 4.3738 -2.8953
12 1 2.4038 1.9945 -2.4358
13 6 4.2901 -0.0451 0.0073
14 6 3.5948 -1.2187 0.0016
15 6 2.2015 -1.2075 0.0005
16 8 1.5175 -2.3792 0.0005
17 6 2.2900 -3.5814 0.0017
18 6 1.3661 -4.7720 0.0021
19 6 0.9465 -5.3208 1.1995
20 6 0.0953 -6.4100 1.1998
21 6 -0.3279 -6.9569 0.0030
22 6 0.0959 -6.4114 -1.1944
23 6 0.9433 -5.3193 -1.1949
24 1 -0.3633 0.0004 1.0276
25 1 -0.3632 0.8897 -0.5143
26 1 -0.3633 -0.8902 -0.5135
27 1 1.6476 2.1181 -0.0007
28 1 3.8286 5.5087 -0.7288
29 1 5.3700 -0.0554 0.0130
30 1 4.1258 -2.1592 0.0024
31 1 2.9193 -3.6097 -0.8878
32 1 2.9180 -3.6089 0.8921
33 1 1.2804 -4.8961 2.1346
34 1 -0.2355 -6.8364 2.1353
35 1 -0.9894 -7.8106 0.0032
36 1 -0.2344 -6.8389 -2.1295
37 1 1.2748 -4.8933 -2.1303
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000258129640.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 07:10:51
Heat of formation + Delta-G solvation = -16.844550 kcal
Electronic energy + Delta-G solvation = -19108.418110 eV
Core-core repulsion = 16200.574253 eV
Total energy + Delta-G solvation = -2907.843857 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 268.120 amu
Computer time = 0.49 seconds
Orbital eigenvalues (eV)
-40.97707 -39.95888 -38.24023 -35.40665 -33.73556 -32.89929 -31.80470 -31.53626
-27.70432 -27.63527 -26.27034 -23.48551 -23.40838 -22.07398 -21.55642 -19.26933
-18.80088 -17.78397 -17.08082 -16.83007 -16.66957 -15.99939 -15.45275 -15.32660
-14.93592 -14.81804 -14.34584 -14.25686 -14.19637 -13.89452 -13.69035 -13.37929
-13.10069 -13.05676 -12.63814 -12.56572 -12.14087 -11.95225 -11.93670 -11.78818
-11.60781 -11.28845 -10.94213 -9.83385 -9.77921 -9.52987 -8.94342 -8.87072
-6.38574 0.30399 0.49001 0.72886 0.78036 1.25778 1.38422 1.48307
2.12921 2.48917 2.56959 3.09097 3.44373 3.81445 3.88431 4.09128
4.15074 4.18674 4.29287 4.30244 4.37006 4.53308 4.61256 4.64557
4.74526 4.82489 4.85929 4.98016 5.04833 5.07294 5.14812 5.14981
5.51617 5.53872 5.59528 5.61124 5.66355 5.71975 5.93159 6.08544
6.12606 6.31885 6.58526 6.80852 6.93820 8.22092
Molecular weight = 268.12amu
Principal moments of inertia in cm(-1)
A = 0.038847 B = 0.004047 C = 0.003896
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 720.612419 B = 6916.584041 C = 7185.154136
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.097 4.097
2 C -0.085 4.085
3 C -0.214 4.214
4 C 0.050 3.950
5 C -0.486 4.486
6 H 0.056 0.944
7 C 0.048 3.952
8 N -0.855 5.855
9 Si 0.958 3.042
10 H -0.256 1.256
11 H -0.277 1.277
12 H -0.256 1.256
13 C -0.190 4.190
14 C -0.154 4.154
15 C 0.012 3.988
16 O -0.321 6.321
17 C 0.100 3.900
18 C -0.106 4.106
19 C -0.112 4.112
20 C -0.128 4.128
21 C -0.116 4.116
22 C -0.128 4.128
23 C -0.113 4.113
24 H 0.072 0.928
25 H 0.060 0.940
26 H 0.070 0.930
27 H 0.104 0.896
28 H 0.292 0.708
29 H 0.109 0.891
30 H 0.135 0.865
31 H 0.067 0.933
32 H 0.068 0.932
33 H 0.126 0.874
34 H 0.146 0.854
35 H 0.150 0.850
36 H 0.146 0.854
37 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.520 -20.269 -1.131 22.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.086 4.086
3 C -0.233 4.233
4 C 0.048 3.952
5 C -0.516 4.516
6 H 0.075 0.925
7 C -0.165 4.165
8 N -0.482 5.482
9 Si 0.782 3.218
10 H -0.181 1.181
11 H -0.203 1.203
12 H -0.180 1.180
13 C -0.209 4.209
14 C -0.173 4.173
15 C -0.032 4.032
16 O -0.237 6.237
17 C 0.025 3.975
18 C -0.106 4.106
19 C -0.130 4.130
20 C -0.146 4.146
21 C -0.134 4.134
22 C -0.146 4.146
23 C -0.131 4.131
24 H 0.091 0.909
25 H 0.079 0.921
26 H 0.089 0.911
27 H 0.121 0.879
28 H 0.102 0.898
29 H 0.127 0.873
30 H 0.153 0.847
31 H 0.085 0.915
32 H 0.086 0.914
33 H 0.144 0.856
34 H 0.164 0.836
35 H 0.168 0.832
36 H 0.163 0.837
37 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -9.664 -20.013 -1.132 22.253
hybrid contribution 0.448 0.711 -0.275 0.884
sum -9.216 -19.302 -1.407 21.435
Atomic orbital electron populations
1.20577 0.90224 1.02164 1.02350 1.18961 0.96653 0.90320 1.02659
1.20622 0.93980 0.96258 1.12489 1.17845 0.92094 0.93392 0.91901
1.19347 1.04545 0.93298 1.34373 0.92539 1.26730 0.98736 0.93756
0.97281 1.69751 1.41025 0.99757 1.37702 0.85592 0.78613 0.79124
0.78482 1.18145 1.20320 1.18015 1.20821 0.98860 0.91871 1.09353
1.20851 0.92742 0.98650 1.05028 1.18503 0.90177 0.84997 1.09557
1.85915 1.35500 1.11748 1.90559 1.21560 0.92728 0.81190 1.02046
1.19654 1.00298 0.96005 0.94663 1.21296 0.97589 0.96693 0.97465
1.21469 0.97432 0.96064 0.99638 1.21581 0.99401 1.00298 0.92118
1.21466 0.97481 0.96037 0.99635 1.21294 0.97637 0.96698 0.97477
0.90929 0.92081 0.91135 0.87865 0.89764 0.87299 0.84727 0.91452
0.91378 0.85566 0.83627 0.83233 0.83655 0.85624
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -3.44 9.78 71.24 0.70 -2.74 16
2 C -0.09 -3.72 5.86 -20.02 -0.12 -3.84 16
3 C -0.21 -10.48 6.75 22.48 0.15 -10.32 16
4 C 0.05 2.62 5.10 -21.28 -0.11 2.51 16
5 C -0.49 -27.86 9.56 23.40 0.22 -27.64 16
6 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16
7 C 0.05 2.66 5.40 85.23 0.46 3.12 16
8 N -0.85 -48.01 13.93 21.82 0.30 -47.71 16
9 Si 0.96 43.90 24.52 68.60 1.68 45.58 16
10 H -0.26 -11.04 6.70 99.48 0.67 -10.37 16
11 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
12 H -0.26 -12.09 6.87 99.48 0.68 -11.41 16
13 C -0.19 -8.88 9.75 22.49 0.22 -8.66 16
14 C -0.15 -6.28 8.96 22.11 0.20 -6.08 16
15 C 0.01 0.48 6.69 22.79 0.15 0.64 16
16 O -0.32 -11.56 9.14 -89.85 -0.82 -12.38 16
17 C 0.10 2.82 4.86 71.24 0.35 3.16 16
18 C -0.11 -2.64 5.51 -19.86 -0.11 -2.75 16
19 C -0.11 -2.48 9.70 22.27 0.22 -2.26 16
20 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16
21 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16
22 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16
23 C -0.11 -2.50 9.70 22.27 0.22 -2.29 16
24 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16
25 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16
26 H 0.07 2.36 7.52 -2.39 -0.02 2.34 16
27 H 0.10 5.04 4.73 -2.91 -0.01 5.03 16
28 H 0.29 14.74 8.30 -92.71 -0.77 13.97 16
29 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16
30 H 0.14 4.49 6.27 -2.91 -0.02 4.47 16
31 H 0.07 1.80 7.59 -2.39 -0.02 1.78 16
32 H 0.07 1.81 7.59 -2.39 -0.02 1.79 16
33 H 0.13 2.60 8.06 -2.91 -0.02 2.57 16
34 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16
35 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16
36 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16
37 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16
Total: -1.00 -63.51 310.63 5.38 -58.13
By element:
Atomic # 1 Polarization: 18.21 SS G_CDS: 1.00 Total: 19.21 kcal
Atomic # 6 Polarization: -66.05 SS G_CDS: 3.22 Total: -62.83 kcal
Atomic # 7 Polarization: -48.01 SS G_CDS: 0.30 Total: -47.71 kcal
Atomic # 8 Polarization: -11.56 SS G_CDS: -0.82 Total: -12.38 kcal
Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.58 kcal
Total: -63.51 5.38 -58.13 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000258129640.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.290 kcal
(2) G-P(sol) polarization free energy of solvation -63.514 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.224 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.845 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.49 seconds