Wall clock time and date at job start Mon Mar 30 2020 07:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38557 * 119.78044 * 2 1 4 4 C 1.37631 * 120.30514 * 179.72453 * 3 2 1 5 5 C 1.40773 * 119.85291 * 0.54537 * 4 3 2 6 6 C 1.41412 * 120.21413 * 179.70625 * 5 4 3 7 7 H 1.07993 * 119.99537 * 155.26337 * 6 5 4 8 8 C 1.39935 * 119.99767 * 335.26433 * 6 5 4 9 9 N 1.30823 * 120.00112 * 342.21254 * 8 6 5 10 10 Si 1.86805 * 119.99361 * 162.20928 * 8 6 5 11 11 H 1.48504 * 109.46849 * 94.66349 * 10 8 6 12 12 H 1.48504 * 109.46811 * 214.65969 * 10 8 6 13 13 H 1.48492 * 109.47538 * 334.66137 * 10 8 6 14 14 C 1.40604 * 119.56947 * 359.72881 * 5 4 3 15 15 C 1.38143 * 119.68919 * 359.97438 * 14 5 4 16 16 O 1.35896 * 119.92853 * 180.02562 * 15 14 5 17 17 C 1.42897 * 117.00125 * 359.97438 * 16 15 14 18 18 C 1.50702 * 109.47416 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00028 * 269.73082 * 18 17 16 20 20 C 1.38234 * 120.00176 * 179.76138 * 19 18 17 21 21 C 1.38237 * 119.99951 * 0.50814 * 20 19 18 22 22 C 1.38238 * 119.99765 * 359.74561 * 21 20 19 23 23 C 1.38233 * 120.00082 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47276 * 269.72915 * 1 2 3 25 25 H 1.08999 * 109.47388 * 149.72443 * 1 2 3 26 26 H 1.09009 * 109.47093 * 29.72681 * 1 2 3 27 27 H 1.08001 * 119.84690 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.07572 * 180.26046 * 4 3 2 29 29 H 0.97001 * 119.99695 * 180.02562 * 9 8 6 30 30 H 1.07994 * 120.15423 * 180.02562 * 14 5 4 31 31 H 1.08995 * 109.47189 * 300.00006 * 17 16 15 32 32 H 1.09002 * 109.47209 * 60.00346 * 17 16 15 33 33 H 1.08005 * 119.99814 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00747 * 180.22843 * 20 19 18 35 35 H 1.08001 * 120.00333 * 179.72286 * 21 20 19 36 36 H 1.08002 * 120.00077 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.00340 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.2026 0.0000 4 6 3.5714 1.2152 0.0057 5 6 4.2833 0.0008 0.0000 6 6 5.6974 0.0048 -0.0005 7 1 6.2399 -0.8448 0.3868 8 6 6.3937 1.1099 -0.5028 9 7 5.7837 1.9712 -1.2758 10 14 8.1942 1.3549 -0.0695 11 1 9.0443 0.7716 -1.1382 12 1 8.4804 2.8069 0.0535 13 1 8.4890 0.6813 1.2206 14 6 3.5792 -1.2163 -0.0058 15 6 2.1978 -1.2075 -0.0052 16 8 1.5123 -2.3810 -0.0103 17 6 2.2845 -3.5833 -0.0166 18 6 1.3605 -4.7738 -0.0208 19 6 0.9425 -5.3287 1.1743 20 6 0.0910 -6.4176 1.1704 21 6 -0.3342 -6.9583 -0.0287 22 6 0.0879 -6.4067 -1.2239 23 6 0.9357 -5.3148 -1.2199 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 -0.8875 -0.5181 26 1 -0.3634 0.8925 -0.5096 27 1 1.6491 2.1344 -0.0004 28 1 4.1040 2.1547 0.0099 29 1 6.2665 2.7370 -1.6243 30 1 4.1158 -2.1534 -0.0098 31 1 2.9125 -3.6072 -0.9071 32 1 2.9138 -3.6156 0.8728 33 1 1.2785 -4.9092 2.1111 34 1 -0.2386 -6.8488 2.1041 35 1 -0.9959 -7.8118 -0.0318 36 1 -0.2439 -6.8293 -2.1607 37 1 1.2659 -4.8841 -2.1537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258173833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:55 Heat of formation + Delta-G solvation = -7.279491 kcal Electronic energy + Delta-G solvation = -19049.059321 eV Core-core repulsion = 16141.630237 eV Total energy + Delta-G solvation = -2907.429084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.49401 -38.53028 -36.31675 -33.81587 -31.93435 -31.09445 -30.89505 -28.46188 -27.24468 -26.17563 -23.65692 -22.56184 -21.70395 -20.49299 -19.96979 -17.88746 -16.81450 -15.76336 -15.55708 -15.50611 -15.08112 -14.35911 -14.16173 -13.99682 -13.38748 -13.28188 -12.97715 -12.69473 -12.51500 -12.28923 -11.92097 -11.55674 -11.45883 -11.20094 -11.08959 -10.89661 -10.85919 -10.55010 -10.47823 -9.86524 -9.78290 -9.44280 -9.05621 -8.91373 -8.77988 -7.42638 -6.83717 -6.77332 -4.38796 1.28123 1.41030 2.74836 3.04060 3.05884 3.09731 3.20577 3.64545 3.90540 4.32843 4.58124 4.86643 4.92565 5.03191 5.15942 5.40698 5.50596 5.63485 5.72189 5.75834 5.98982 6.06503 6.11990 6.28312 6.42766 6.45090 6.47836 6.53654 6.67407 6.70305 6.82030 6.93797 6.98866 7.03244 7.23811 7.36199 7.74263 7.95447 8.06606 8.19996 8.37441 8.65331 8.86942 8.98519 10.15330 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.004253 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.517966 B = 6582.078605 C = 7357.450424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.238 4.238 3 C -0.074 4.074 4 C -0.186 4.186 5 C 0.135 3.865 6 C -0.463 4.463 7 H 0.077 0.923 8 C 0.078 3.922 9 N -0.789 5.789 10 Si 0.907 3.093 11 H -0.270 1.270 12 H -0.275 1.275 13 H -0.260 1.260 14 C -0.307 4.307 15 C 0.144 3.856 16 O -0.320 6.320 17 C 0.104 3.896 18 C -0.081 4.081 19 C -0.098 4.098 20 C -0.126 4.126 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.098 4.098 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.042 0.958 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.281 0.719 30 H 0.098 0.902 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.742 -10.932 1.614 12.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.239 4.239 3 C -0.092 4.092 4 C -0.205 4.205 5 C 0.133 3.867 6 C -0.492 4.492 7 H 0.095 0.905 8 C -0.141 4.141 9 N -0.414 5.414 10 Si 0.731 3.269 11 H -0.196 1.196 12 H -0.200 1.200 13 H -0.184 1.184 14 C -0.327 4.327 15 C 0.100 3.900 16 O -0.235 6.235 17 C 0.028 3.972 18 C -0.081 4.081 19 C -0.116 4.116 20 C -0.144 4.144 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.116 4.116 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.897 -10.742 1.466 12.850 hybrid contribution 1.145 0.137 0.042 1.154 sum -5.752 -10.605 1.508 12.158 Atomic orbital electron populations 1.20220 0.93261 1.00156 0.99577 1.18481 0.94103 0.90355 1.21005 1.20394 0.94490 0.94713 0.99624 1.21268 0.92241 0.98755 1.08281 1.17370 0.93099 0.90234 0.86029 1.19566 0.91406 1.02023 1.36194 0.90493 1.25911 1.00861 0.94763 0.92530 1.69842 1.38587 1.10906 1.22067 0.86327 0.81996 0.78437 0.80143 1.19560 1.19966 1.18399 1.20994 0.91541 0.98255 1.21898 1.18496 0.90385 0.83498 0.97573 1.85971 1.35602 1.12080 1.89859 1.21352 0.91998 0.81785 1.02037 1.19733 0.98831 0.96052 0.93520 1.21130 0.96906 0.95803 0.97792 1.21123 0.98353 0.96842 0.98072 1.21152 1.00000 0.99971 0.92691 1.21128 0.98373 0.96747 0.98119 1.21142 0.96854 0.95805 0.97808 0.94205 0.93283 0.93898 0.88761 0.86376 0.90828 0.88358 0.91668 0.91756 0.85824 0.86062 0.86245 0.86049 0.85787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.48 9.78 36.00 0.35 -1.13 16 2 C -0.24 -5.56 5.91 -104.18 -0.62 -6.18 16 3 C -0.07 -1.77 9.66 -39.69 -0.38 -2.15 16 4 C -0.19 -4.90 8.69 -38.85 -0.34 -5.23 16 5 C 0.14 3.64 5.57 -106.84 -0.60 3.05 16 6 C -0.46 -12.29 9.05 -37.74 -0.34 -12.63 16 7 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 8 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 9 N -0.79 -20.35 10.97 55.55 0.61 -19.74 16 10 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 11 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 12 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 13 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 14 C -0.31 -7.64 8.78 -38.72 -0.34 -7.98 16 15 C 0.14 3.41 6.65 -39.29 -0.26 3.15 16 16 O -0.32 -6.72 9.14 -19.41 -0.18 -6.90 16 17 C 0.10 1.80 4.86 36.01 0.18 1.98 16 18 C -0.08 -1.22 5.51 -104.62 -0.58 -1.79 16 19 C -0.10 -1.31 9.70 -39.58 -0.38 -1.70 16 20 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 21 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 22 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 23 C -0.10 -1.33 9.70 -39.58 -0.38 -1.71 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.95 7.51 -51.93 -0.39 0.56 16 26 H 0.04 0.76 8.08 -51.92 -0.42 0.34 16 27 H 0.09 2.02 8.06 -52.49 -0.42 1.60 16 28 H 0.12 3.18 6.17 -52.49 -0.32 2.85 16 29 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 30 H 0.10 2.28 6.28 -52.49 -0.33 1.95 16 31 H 0.07 1.12 7.60 -51.93 -0.39 0.73 16 32 H 0.06 1.09 7.59 -51.93 -0.39 0.69 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.12 1.58 8.06 -52.48 -0.42 1.15 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -28.71 316.10 -9.57 -38.28 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.76 Total: 5.94 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: -4.97 Total: -35.82 kcal Atomic # 7 Polarization: -20.35 SS G_CDS: 0.61 Total: -19.74 kcal Atomic # 8 Polarization: -6.72 SS G_CDS: -0.18 Total: -6.90 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.71 -9.57 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258173833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.004 kcal (2) G-P(sol) polarization free energy of solvation -28.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds