Wall clock time and date at job start Mon Mar 30 2020 07:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38557 * 119.78044 * 2 1 4 4 C 1.37631 * 120.30514 * 179.72453 * 3 2 1 5 5 C 1.40773 * 119.85291 * 0.54537 * 4 3 2 6 6 C 1.41412 * 120.21413 * 179.70625 * 5 4 3 7 7 H 1.07993 * 119.99537 * 155.26337 * 6 5 4 8 8 C 1.39935 * 119.99767 * 335.26433 * 6 5 4 9 9 N 1.30823 * 120.00112 * 342.21254 * 8 6 5 10 10 Si 1.86805 * 119.99361 * 162.20928 * 8 6 5 11 11 H 1.48504 * 109.46849 * 94.66349 * 10 8 6 12 12 H 1.48504 * 109.46811 * 214.65969 * 10 8 6 13 13 H 1.48492 * 109.47538 * 334.66137 * 10 8 6 14 14 C 1.40604 * 119.56947 * 359.72881 * 5 4 3 15 15 C 1.38143 * 119.68919 * 359.97438 * 14 5 4 16 16 O 1.35896 * 119.92853 * 180.02562 * 15 14 5 17 17 C 1.42897 * 117.00125 * 359.97438 * 16 15 14 18 18 C 1.50702 * 109.47416 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00028 * 269.73082 * 18 17 16 20 20 C 1.38234 * 120.00176 * 179.76138 * 19 18 17 21 21 C 1.38237 * 119.99951 * 0.50814 * 20 19 18 22 22 C 1.38238 * 119.99765 * 359.74561 * 21 20 19 23 23 C 1.38233 * 120.00082 * 0.02562 * 22 21 20 24 24 H 1.08998 * 109.47276 * 269.72915 * 1 2 3 25 25 H 1.08999 * 109.47388 * 149.72443 * 1 2 3 26 26 H 1.09009 * 109.47093 * 29.72681 * 1 2 3 27 27 H 1.08001 * 119.84690 * 359.97438 * 3 2 1 28 28 H 1.07996 * 120.07572 * 180.26046 * 4 3 2 29 29 H 0.97001 * 119.99695 * 180.02562 * 9 8 6 30 30 H 1.07994 * 120.15423 * 180.02562 * 14 5 4 31 31 H 1.08995 * 109.47189 * 300.00006 * 17 16 15 32 32 H 1.09002 * 109.47209 * 60.00346 * 17 16 15 33 33 H 1.08005 * 119.99814 * 359.97438 * 19 18 17 34 34 H 1.07998 * 120.00747 * 180.22843 * 20 19 18 35 35 H 1.08001 * 120.00333 * 179.72286 * 21 20 19 36 36 H 1.08002 * 120.00077 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.00340 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1951 1.2026 0.0000 4 6 3.5714 1.2152 0.0057 5 6 4.2833 0.0008 0.0000 6 6 5.6974 0.0048 -0.0005 7 1 6.2399 -0.8448 0.3868 8 6 6.3937 1.1099 -0.5028 9 7 5.7837 1.9712 -1.2758 10 14 8.1942 1.3549 -0.0695 11 1 9.0443 0.7716 -1.1382 12 1 8.4804 2.8069 0.0535 13 1 8.4890 0.6813 1.2206 14 6 3.5792 -1.2163 -0.0058 15 6 2.1978 -1.2075 -0.0052 16 8 1.5123 -2.3810 -0.0103 17 6 2.2845 -3.5833 -0.0166 18 6 1.3605 -4.7738 -0.0208 19 6 0.9425 -5.3287 1.1743 20 6 0.0910 -6.4176 1.1704 21 6 -0.3342 -6.9583 -0.0287 22 6 0.0879 -6.4067 -1.2239 23 6 0.9357 -5.3148 -1.2199 24 1 -0.3634 -0.0049 1.0276 25 1 -0.3634 -0.8875 -0.5181 26 1 -0.3634 0.8925 -0.5096 27 1 1.6491 2.1344 -0.0004 28 1 4.1040 2.1547 0.0099 29 1 6.2665 2.7370 -1.6243 30 1 4.1158 -2.1534 -0.0098 31 1 2.9125 -3.6072 -0.9071 32 1 2.9138 -3.6156 0.8728 33 1 1.2785 -4.9092 2.1111 34 1 -0.2386 -6.8488 2.1041 35 1 -0.9959 -7.8118 -0.0318 36 1 -0.2439 -6.8293 -2.1607 37 1 1.2659 -4.8841 -2.1537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258173833.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:55 Heat of formation + Delta-G solvation = -20.135471 kcal Electronic energy + Delta-G solvation = -19049.616798 eV Core-core repulsion = 16141.630237 eV Total energy + Delta-G solvation = -2907.986562 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.90453 -39.87972 -38.06664 -35.66590 -33.23993 -32.78929 -31.82852 -30.29526 -29.08775 -27.49374 -25.47747 -23.50398 -23.09788 -22.22273 -21.59095 -19.73305 -17.85697 -17.62278 -17.06499 -16.88700 -16.44544 -15.97834 -15.66858 -15.43907 -14.94496 -14.43141 -14.31679 -14.15353 -14.05020 -13.69870 -13.39520 -13.30966 -13.06736 -12.78201 -12.67277 -12.38201 -12.16362 -11.96932 -11.94289 -11.69236 -11.56982 -11.27773 -10.92452 -9.85535 -9.80178 -9.36107 -8.72072 -8.66363 -6.38441 0.27776 0.46946 0.91195 1.12013 1.37233 1.48232 1.53897 2.19091 2.44130 2.68383 3.05032 3.66518 3.79805 3.84337 4.10939 4.25726 4.27006 4.32266 4.37034 4.52827 4.62324 4.71711 4.73019 4.94360 4.99206 5.00495 5.03060 5.12028 5.12811 5.16576 5.30955 5.48960 5.52202 5.57031 5.64745 5.86069 6.00000 6.06750 6.14056 6.27877 6.49017 6.72797 6.90016 7.06253 8.29989 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.024184 B = 0.004253 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.517966 B = 6582.078605 C = 7357.450424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.247 4.247 3 C -0.074 4.074 4 C -0.213 4.213 5 C 0.105 3.895 6 C -0.500 4.500 7 H 0.075 0.925 8 C 0.038 3.962 9 N -0.820 5.820 10 Si 0.983 3.017 11 H -0.262 1.262 12 H -0.263 1.263 13 H -0.259 1.259 14 C -0.321 4.321 15 C 0.142 3.858 16 O -0.322 6.322 17 C 0.103 3.897 18 C -0.107 4.107 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.113 4.113 22 C -0.126 4.126 23 C -0.114 4.114 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.290 0.710 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.125 0.875 34 H 0.150 0.850 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.908 -12.305 1.850 14.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.249 4.249 3 C -0.092 4.092 4 C -0.232 4.232 5 C 0.103 3.897 6 C -0.529 4.529 7 H 0.093 0.907 8 C -0.178 4.178 9 N -0.445 5.445 10 Si 0.803 3.197 11 H -0.186 1.186 12 H -0.188 1.188 13 H -0.183 1.183 14 C -0.342 4.342 15 C 0.097 3.903 16 O -0.237 6.237 17 C 0.028 3.972 18 C -0.107 4.107 19 C -0.131 4.131 20 C -0.143 4.143 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.133 4.133 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.138 0.862 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.166 0.834 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.085 -12.130 1.698 14.676 hybrid contribution 1.361 0.432 -0.049 1.429 sum -6.724 -11.698 1.649 13.593 Atomic orbital electron populations 1.20215 0.90336 1.01208 1.00815 1.18997 0.96382 0.89948 1.19555 1.20685 0.93842 0.96235 0.98461 1.21251 0.93364 0.98058 1.10574 1.17737 0.93907 0.91161 0.86895 1.19823 0.91809 1.03292 1.37932 0.90727 1.26779 1.05547 0.93811 0.91657 1.69886 1.40690 1.11450 1.22493 0.85185 0.75855 0.78795 0.79827 1.18629 1.18759 1.18286 1.21143 0.92482 0.98021 1.22506 1.18665 0.90078 0.84933 0.96583 1.85970 1.36103 1.12281 1.89369 1.21493 0.92692 0.81422 1.01577 1.19628 1.00235 0.95801 0.95019 1.21281 0.97724 0.96856 0.97229 1.21479 0.97184 0.95809 0.99813 1.21612 0.99305 1.00264 0.91922 1.21471 0.97261 0.95729 0.99882 1.21278 0.97801 0.96963 0.97221 0.92740 0.93189 0.91875 0.86218 0.87746 0.89939 0.87905 0.92324 0.91981 0.85739 0.83257 0.82773 0.83377 0.85996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.59 9.78 71.23 0.70 -1.89 16 2 C -0.25 -11.52 5.91 -19.58 -0.12 -11.64 16 3 C -0.07 -3.58 9.66 22.20 0.21 -3.36 16 4 C -0.21 -11.60 8.69 22.75 0.20 -11.40 16 5 C 0.11 5.93 5.57 -21.30 -0.12 5.81 16 6 C -0.50 -27.62 9.05 23.46 0.21 -27.41 16 7 H 0.07 3.98 7.91 -2.91 -0.02 3.96 16 8 C 0.04 1.93 5.14 85.25 0.44 2.36 16 9 N -0.82 -43.33 10.97 21.82 0.24 -43.09 16 10 Si 0.98 38.36 29.60 68.60 2.03 40.39 16 11 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 12 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 13 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 14 C -0.32 -16.68 8.78 22.82 0.20 -16.48 16 15 C 0.14 6.84 6.65 22.46 0.15 6.99 16 16 O -0.32 -13.73 9.14 -92.39 -0.84 -14.57 16 17 C 0.10 3.70 4.86 71.24 0.35 4.05 16 18 C -0.11 -3.19 5.51 -19.86 -0.11 -3.30 16 19 C -0.11 -2.92 9.70 22.27 0.22 -2.70 16 20 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 21 C -0.11 -2.02 10.05 22.27 0.22 -1.80 16 22 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 23 C -0.11 -3.02 9.70 22.27 0.22 -2.80 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.05 1.85 7.51 -2.39 -0.02 1.83 16 26 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 27 H 0.12 5.03 8.06 -2.91 -0.02 5.00 16 28 H 0.10 5.86 6.17 -2.91 -0.02 5.85 16 29 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 30 H 0.10 5.05 6.28 -2.91 -0.02 5.03 16 31 H 0.06 2.13 7.60 -2.39 -0.02 2.11 16 32 H 0.06 2.20 7.59 -2.39 -0.02 2.18 16 33 H 0.12 3.07 8.06 -2.91 -0.02 3.04 16 34 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -63.59 316.10 5.70 -57.89 By element: Atomic # 1 Polarization: 26.50 SS G_CDS: 1.06 Total: 27.56 kcal Atomic # 6 Polarization: -71.39 SS G_CDS: 3.21 Total: -68.17 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.24 Total: -43.09 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.84 Total: -14.57 kcal Atomic # 14 Polarization: 38.36 SS G_CDS: 2.03 Total: 40.39 kcal Total: -63.59 5.70 -57.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258173833.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.757 kcal (2) G-P(sol) polarization free energy of solvation -63.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds