Wall clock time and date at job start Mon Mar 30 2020 07:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29028 * 124.91843 * 2 1 4 4 C 1.31776 * 117.12586 * 179.75372 * 3 2 1 5 5 C 1.50703 * 122.75180 * 180.33474 * 4 3 2 6 6 C 1.33645 * 114.50131 * 0.52218 * 4 3 2 7 7 C 1.50696 * 126.04083 * 179.79120 * 6 4 3 8 8 H 1.09003 * 109.47295 * 6.51180 * 7 6 4 9 9 C 1.52996 * 109.47323 * 126.50929 * 7 6 4 10 10 N 1.46895 * 109.47208 * 246.51457 * 7 6 4 11 11 C 1.46903 * 110.99758 * 291.72499 * 10 7 6 12 12 C 1.46895 * 111.00381 * 167.77279 * 10 7 6 13 13 H 1.09004 * 109.47325 * 59.28082 * 12 10 7 14 14 C 1.53001 * 109.47155 * 299.28458 * 12 10 7 15 15 C 1.50699 * 109.47340 * 179.28117 * 12 10 7 16 16 H 1.07995 * 119.99921 * 27.54405 * 15 12 10 17 17 C 1.37882 * 119.99990 * 207.54534 * 15 12 10 18 18 N 1.31515 * 120.00132 * 359.13661 * 17 15 12 19 19 Si 1.86804 * 119.99909 * 179.14270 * 17 15 12 20 20 H 1.48497 * 109.46860 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46771 * 299.99747 * 19 17 15 22 22 H 1.48495 * 109.47121 * 59.99779 * 19 17 15 23 23 S 1.70975 * 124.91746 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47019 * 269.95840 * 1 2 3 25 25 H 1.08996 * 109.46992 * 29.95578 * 1 2 3 26 26 H 1.08998 * 109.47426 * 149.95995 * 1 2 3 27 27 H 1.08995 * 109.46982 * 270.20110 * 5 4 3 28 28 H 1.08994 * 109.46834 * 30.20007 * 5 4 3 29 29 H 1.08998 * 109.47271 * 150.20109 * 5 4 3 30 30 H 1.08999 * 109.47448 * 299.99936 * 9 7 6 31 31 H 1.09006 * 109.47223 * 59.99905 * 9 7 6 32 32 H 1.08998 * 109.47114 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47517 * 302.37274 * 11 10 7 34 34 H 1.09007 * 109.46854 * 62.37349 * 11 10 7 35 35 H 1.09001 * 109.47293 * 182.36573 * 11 10 7 36 36 H 1.09000 * 109.46905 * 307.33193 * 14 12 10 37 37 H 1.08995 * 109.46911 * 67.33613 * 14 12 10 38 38 H 1.09002 * 109.47116 * 187.33213 * 14 12 10 39 39 H 0.97002 * 120.00276 * 354.02213 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8793 0.0050 5 6 4.5307 2.0245 0.0131 6 6 3.9354 -0.4007 -0.0015 7 6 5.3574 -0.8995 -0.0025 8 1 6.0381 -0.0570 0.1196 9 6 5.5532 -1.8845 1.1517 10 7 5.6384 -1.5754 -1.2761 11 6 4.8779 -2.8273 -1.3866 12 6 7.0782 -1.8181 -1.4369 13 1 7.4364 -2.4372 -0.6143 14 6 7.8243 -0.4824 -1.4322 15 6 7.3253 -2.5270 -2.7436 16 1 6.6419 -2.3920 -3.5688 17 6 8.4239 -3.3481 -2.8855 18 7 9.2653 -3.4993 -1.8861 19 14 8.7171 -4.2456 -4.4973 20 1 9.9556 -5.0582 -4.3931 21 1 7.5641 -5.1362 -4.7848 22 1 8.8643 -3.2564 -5.5950 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8896 -0.5144 27 1 4.7686 2.3063 -1.0126 28 1 4.0897 2.8762 0.5309 29 1 5.4424 1.7193 0.5267 30 1 5.3447 -1.3830 2.0968 31 1 4.8724 -2.7271 1.0297 32 1 6.5816 -2.2456 1.1507 33 1 5.1224 -3.4765 -0.5459 34 1 3.8105 -2.6062 -1.3764 35 1 5.1362 -3.3282 -2.3196 36 1 7.3786 0.1852 -2.1696 37 1 7.7537 -0.0303 -0.4430 38 1 8.8722 -0.6507 -1.6808 39 1 9.1626 -2.9682 -1.0809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:49 Heat of formation + Delta-G solvation = 39.776286 kcal Electronic energy + Delta-G solvation = -19101.395680 eV Core-core repulsion = 16363.743790 eV Total energy + Delta-G solvation = -2737.651890 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80576 -37.89734 -33.89335 -32.55352 -30.39020 -29.40044 -28.89754 -26.86597 -25.13162 -24.34462 -22.71066 -22.01151 -19.68986 -18.22638 -17.52407 -16.67498 -15.53808 -15.17586 -14.87394 -14.01003 -13.75799 -13.56611 -13.50912 -13.20757 -13.18005 -12.83490 -12.39756 -12.26562 -12.06339 -11.85844 -11.58099 -11.31558 -11.20614 -11.11344 -11.03477 -10.82481 -10.42526 -10.34708 -10.12564 -9.99410 -9.34720 -8.92516 -8.56793 -8.44432 -8.27289 -7.30612 -6.38381 -4.10988 0.94229 1.57122 2.00821 2.98631 3.42066 3.43232 3.61970 4.22225 4.47962 4.87122 5.04607 5.11130 5.30016 5.33165 5.35605 5.36473 5.53489 5.60431 5.73982 5.79654 5.90469 5.95897 6.08544 6.11544 6.21248 6.26331 6.35956 6.49885 6.55813 6.67910 6.69032 6.90430 7.05019 7.37698 7.81155 7.95073 7.97780 8.32510 8.54852 8.83269 9.60540 10.97889 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.005402 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.882640 B = 5181.977325 C = 5532.724752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.017 3.983 3 N -0.471 5.471 4 C 0.055 3.945 5 C -0.073 4.073 6 C -0.179 4.179 7 C 0.143 3.857 8 H 0.101 0.899 9 C -0.184 4.184 10 N -0.522 5.522 11 C 0.028 3.972 12 C 0.194 3.806 13 H 0.010 0.990 14 C -0.132 4.132 15 C -0.581 4.581 16 H 0.056 0.944 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 1.067 2.933 20 H -0.283 1.283 21 H -0.288 1.288 22 H -0.287 1.287 23 S 0.125 5.875 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.018 0.982 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.016 0.984 38 H 0.051 0.949 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 5.291 5.751 15.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.261 4.261 3 N -0.187 5.187 4 C -0.076 4.076 5 C -0.133 4.133 6 C -0.301 4.301 7 C 0.032 3.968 8 H 0.119 0.881 9 C -0.243 4.243 10 N -0.246 5.246 11 C -0.121 4.121 12 C 0.088 3.912 13 H 0.027 0.973 14 C -0.190 4.190 15 C -0.620 4.620 16 H 0.074 0.926 17 C -0.184 4.184 18 N -0.549 5.549 19 Si 0.895 3.105 20 H -0.209 1.209 21 H -0.215 1.215 22 H -0.214 1.214 23 S 0.381 5.619 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.070 0.930 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.661 3.931 4.617 14.038 hybrid contribution -0.198 1.290 1.367 1.890 sum -12.859 5.221 5.984 15.114 Atomic orbital electron populations 1.20340 0.85776 1.03769 1.03283 1.26943 1.01481 0.92318 1.05341 1.66096 1.04496 1.31981 1.16089 1.20035 0.90019 0.94050 1.03545 1.20307 0.95688 0.94267 1.03004 1.25778 0.99366 0.95257 1.09680 1.20209 0.88363 0.97901 0.90304 0.88117 1.22515 1.02949 1.00207 0.98651 1.62364 1.10977 1.23311 1.27947 1.22425 0.95856 0.91474 1.02322 1.19488 0.81543 0.92748 0.97439 0.97259 1.21948 1.00648 0.98819 0.97602 1.21832 1.11747 1.30490 0.97912 0.92563 1.25803 0.92922 0.96237 1.03423 1.70800 1.37953 1.40253 1.05911 0.83566 0.76243 0.76204 0.74448 1.20877 1.21486 1.21372 1.83937 0.97554 1.12008 1.68386 0.90150 0.89779 0.90439 0.90623 0.91228 0.90906 0.92734 0.92180 0.91359 0.96325 0.93563 0.89549 0.93422 0.96474 0.92999 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.46 36.00 0.38 -0.32 16 2 C 0.02 0.24 7.39 -13.46 -0.10 0.14 16 3 N -0.47 -7.66 10.53 -8.06 -0.08 -7.75 16 4 C 0.05 0.90 6.74 -84.22 -0.57 0.34 16 5 C -0.07 -1.02 9.96 36.01 0.36 -0.66 16 6 C -0.18 -3.03 5.27 -35.92 -0.19 -3.22 16 7 C 0.14 2.59 2.50 -68.87 -0.17 2.42 16 8 H 0.10 1.80 4.14 -51.93 -0.21 1.59 16 9 C -0.18 -3.10 8.27 37.16 0.31 -2.79 16 10 N -0.52 -11.08 4.55 -229.69 -1.04 -12.12 16 11 C 0.03 0.57 8.41 60.07 0.51 1.07 16 12 C 0.19 4.65 1.57 -68.87 -0.11 4.54 16 13 H 0.01 0.25 5.32 -51.93 -0.28 -0.02 16 14 C -0.13 -2.94 8.74 37.16 0.32 -2.61 16 15 C -0.58 -15.61 6.90 -34.44 -0.24 -15.85 16 16 H 0.06 1.56 7.58 -52.49 -0.40 1.16 16 17 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 18 N -0.91 -26.55 13.59 55.43 0.75 -25.80 16 19 Si 1.07 24.63 29.90 -169.99 -5.08 19.54 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 S 0.13 1.85 19.79 -107.50 -2.13 -0.28 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.95 6.67 -51.93 -0.35 0.60 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.00 6.00 -51.93 -0.31 0.69 16 32 H 0.07 1.24 6.76 -51.93 -0.35 0.89 16 33 H 0.02 0.37 6.05 -51.93 -0.31 0.06 16 34 H 0.05 0.84 4.93 -41.53 -0.20 0.64 16 35 H 0.09 1.93 6.57 -51.93 -0.34 1.59 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.02 0.32 6.56 -51.93 -0.34 -0.02 16 38 H 0.05 1.23 8.13 -51.93 -0.42 0.81 16 39 H 0.27 7.76 6.71 -40.82 -0.27 7.49 16 LS Contribution 313.77 15.07 4.73 4.73 Total: -1.00 -30.01 313.77 -8.01 -38.01 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.55 Total: 0.15 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 0.40 Total: -16.48 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: -0.38 Total: -45.67 kcal Atomic # 14 Polarization: 24.63 SS G_CDS: -5.08 Total: 19.54 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.13 Total: -0.28 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.01 -8.01 -38.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.790 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds