Wall clock time and date at job start Mon Mar 30 2020 07:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29028 * 124.91843 * 2 1 4 4 C 1.31776 * 117.12586 * 179.75372 * 3 2 1 5 5 C 1.50703 * 122.75180 * 180.33474 * 4 3 2 6 6 C 1.33645 * 114.50131 * 0.52218 * 4 3 2 7 7 C 1.50696 * 126.04083 * 179.79120 * 6 4 3 8 8 H 1.09003 * 109.47295 * 6.51180 * 7 6 4 9 9 C 1.52996 * 109.47323 * 126.50929 * 7 6 4 10 10 N 1.46895 * 109.47208 * 246.51457 * 7 6 4 11 11 C 1.46903 * 110.99758 * 291.72499 * 10 7 6 12 12 C 1.46895 * 111.00381 * 167.77279 * 10 7 6 13 13 H 1.09004 * 109.47325 * 59.28082 * 12 10 7 14 14 C 1.53001 * 109.47155 * 299.28458 * 12 10 7 15 15 C 1.50699 * 109.47340 * 179.28117 * 12 10 7 16 16 H 1.07995 * 119.99921 * 27.54405 * 15 12 10 17 17 C 1.37882 * 119.99990 * 207.54534 * 15 12 10 18 18 N 1.31515 * 120.00132 * 359.13661 * 17 15 12 19 19 Si 1.86804 * 119.99909 * 179.14270 * 17 15 12 20 20 H 1.48497 * 109.46860 * 180.02562 * 19 17 15 21 21 H 1.48499 * 109.46771 * 299.99747 * 19 17 15 22 22 H 1.48495 * 109.47121 * 59.99779 * 19 17 15 23 23 S 1.70975 * 124.91746 * 180.02562 * 2 1 3 24 24 H 1.09006 * 109.47019 * 269.95840 * 1 2 3 25 25 H 1.08996 * 109.46992 * 29.95578 * 1 2 3 26 26 H 1.08998 * 109.47426 * 149.95995 * 1 2 3 27 27 H 1.08995 * 109.46982 * 270.20110 * 5 4 3 28 28 H 1.08994 * 109.46834 * 30.20007 * 5 4 3 29 29 H 1.08998 * 109.47271 * 150.20109 * 5 4 3 30 30 H 1.08999 * 109.47448 * 299.99936 * 9 7 6 31 31 H 1.09006 * 109.47223 * 59.99905 * 9 7 6 32 32 H 1.08998 * 109.47114 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47517 * 302.37274 * 11 10 7 34 34 H 1.09007 * 109.46854 * 62.37349 * 11 10 7 35 35 H 1.09001 * 109.47293 * 182.36573 * 11 10 7 36 36 H 1.09000 * 109.46905 * 307.33193 * 14 12 10 37 37 H 1.08995 * 109.46911 * 67.33613 * 14 12 10 38 38 H 1.09002 * 109.47116 * 187.33213 * 14 12 10 39 39 H 0.97002 * 120.00276 * 354.02213 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8793 0.0050 5 6 4.5307 2.0245 0.0131 6 6 3.9354 -0.4007 -0.0015 7 6 5.3574 -0.8995 -0.0025 8 1 6.0381 -0.0570 0.1196 9 6 5.5532 -1.8845 1.1517 10 7 5.6384 -1.5754 -1.2761 11 6 4.8779 -2.8273 -1.3866 12 6 7.0782 -1.8181 -1.4369 13 1 7.4364 -2.4372 -0.6143 14 6 7.8243 -0.4824 -1.4322 15 6 7.3253 -2.5270 -2.7436 16 1 6.6419 -2.3920 -3.5688 17 6 8.4239 -3.3481 -2.8855 18 7 9.2653 -3.4993 -1.8861 19 14 8.7171 -4.2456 -4.4973 20 1 9.9556 -5.0582 -4.3931 21 1 7.5641 -5.1362 -4.7848 22 1 8.8643 -3.2564 -5.5950 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 -0.0007 1.0277 25 1 -0.3633 0.8904 -0.5131 26 1 -0.3634 -0.8896 -0.5144 27 1 4.7686 2.3063 -1.0126 28 1 4.0897 2.8762 0.5309 29 1 5.4424 1.7193 0.5267 30 1 5.3447 -1.3830 2.0968 31 1 4.8724 -2.7271 1.0297 32 1 6.5816 -2.2456 1.1507 33 1 5.1224 -3.4765 -0.5459 34 1 3.8105 -2.6062 -1.3764 35 1 5.1362 -3.3282 -2.3196 36 1 7.3786 0.1852 -2.1696 37 1 7.7537 -0.0303 -0.4430 38 1 8.8722 -0.6507 -1.6808 39 1 9.1626 -2.9682 -1.0809 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831608.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:48 Heat of formation + Delta-G solvation = 20.839439 kcal Electronic energy + Delta-G solvation = -19102.216844 eV Core-core repulsion = 16363.743790 eV Total energy + Delta-G solvation = -2738.473054 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03364 -39.49021 -35.65147 -33.91881 -31.99999 -30.92939 -30.04960 -28.10833 -27.01152 -26.13827 -23.97124 -23.46823 -21.33730 -19.52337 -18.83480 -18.58194 -17.12021 -16.52635 -16.18360 -15.65094 -15.47320 -15.05813 -14.95365 -14.36320 -14.19658 -14.15993 -13.70554 -13.50912 -13.37756 -13.24099 -13.07251 -12.86343 -12.80989 -12.77509 -12.58578 -12.41705 -12.14822 -11.95421 -11.91379 -11.63648 -10.59287 -10.53070 -10.49755 -10.13931 -9.47870 -9.03026 -8.55019 -6.28905 -0.24060 0.41223 0.82259 1.54557 1.60831 1.79031 1.80426 2.57204 3.13657 3.19741 3.35938 3.71460 3.98011 4.07325 4.18314 4.34206 4.43207 4.52566 4.56361 4.57621 4.66798 4.67490 4.70606 4.76028 4.78711 4.84109 4.90091 4.96688 5.09941 5.11004 5.14390 5.22684 5.38514 5.52034 5.95562 6.01615 6.42335 6.50170 6.74562 6.79753 7.49687 8.80504 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.028803 B = 0.005402 C = 0.005060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.882640 B = 5181.977325 C = 5532.724752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.031 3.969 3 N -0.497 5.497 4 C 0.054 3.946 5 C -0.074 4.074 6 C -0.213 4.213 7 C 0.148 3.852 8 H 0.101 0.899 9 C -0.177 4.177 10 N -0.530 5.530 11 C 0.034 3.966 12 C 0.197 3.803 13 H -0.015 1.015 14 C -0.120 4.120 15 C -0.585 4.585 16 H 0.044 0.956 17 C -0.026 4.026 18 N -0.938 5.938 19 Si 1.109 2.891 20 H -0.286 1.286 21 H -0.274 1.274 22 H -0.274 1.274 23 S 0.133 5.867 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.047 0.953 33 H 0.016 0.984 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.043 0.957 38 H 0.030 0.970 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.018 5.880 5.864 17.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.247 4.247 3 N -0.213 5.213 4 C -0.078 4.078 5 C -0.134 4.134 6 C -0.334 4.334 7 C 0.038 3.962 8 H 0.118 0.882 9 C -0.236 4.236 10 N -0.254 5.254 11 C -0.114 4.114 12 C 0.090 3.910 13 H 0.003 0.997 14 C -0.179 4.179 15 C -0.624 4.624 16 H 0.063 0.937 17 C -0.224 4.224 18 N -0.576 5.576 19 Si 0.932 3.068 20 H -0.212 1.212 21 H -0.199 1.199 22 H -0.199 1.199 23 S 0.390 5.610 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.685 4.531 4.738 16.082 hybrid contribution 0.260 1.175 1.386 1.835 sum -14.425 5.706 6.124 16.678 Atomic orbital electron populations 1.20593 0.82591 1.05142 1.05086 1.27752 1.03231 0.91373 1.02323 1.66206 1.04481 1.32706 1.17875 1.20407 0.90668 0.94492 1.02211 1.20375 0.95654 0.94183 1.03139 1.25595 0.99258 0.96033 1.12494 1.20122 0.89591 0.97577 0.88938 0.88184 1.22425 1.01599 1.00094 0.99435 1.62267 1.09082 1.23545 1.30515 1.22346 0.97120 0.91140 1.00842 1.19314 0.83561 0.92852 0.95275 0.99748 1.21766 0.98901 0.98027 0.99174 1.22070 1.11127 1.30464 0.98723 0.93736 1.27042 0.92794 0.97091 1.05468 1.70908 1.39138 1.41251 1.06339 0.83016 0.76408 0.75774 0.71590 1.21183 1.19916 1.19916 1.83803 0.96784 1.12064 1.68391 0.87976 0.89019 0.88405 0.90832 0.89826 0.90280 0.90451 0.92210 0.93371 0.96544 0.91296 0.92050 0.93338 0.93790 0.95121 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.46 71.24 0.75 -0.43 16 2 C 0.03 0.79 7.39 88.52 0.65 1.44 16 3 N -0.50 -15.06 10.53 -179.40 -1.89 -16.95 16 4 C 0.05 1.68 6.74 41.53 0.28 1.96 16 5 C -0.07 -1.95 9.96 71.24 0.71 -1.25 16 6 C -0.21 -6.87 5.27 24.64 0.13 -6.74 16 7 C 0.15 5.24 2.50 44.17 0.11 5.35 16 8 H 0.10 3.49 4.14 -2.39 -0.01 3.48 16 9 C -0.18 -5.84 8.27 71.98 0.60 -5.25 16 10 N -0.53 -22.50 4.55 -880.61 -4.00 -26.51 16 11 C 0.03 1.40 8.41 127.69 1.07 2.47 16 12 C 0.20 9.61 1.57 44.17 0.07 9.68 16 13 H -0.02 -0.81 5.32 -2.39 -0.01 -0.82 16 14 C -0.12 -5.40 8.74 71.98 0.63 -4.77 16 15 C -0.59 -31.96 6.90 25.60 0.18 -31.78 16 16 H 0.04 2.49 7.58 -2.91 -0.02 2.47 16 17 C -0.03 -1.42 5.46 84.66 0.46 -0.96 16 18 N -0.94 -55.79 13.59 21.45 0.29 -55.49 16 19 Si 1.11 49.75 29.90 68.60 2.05 51.81 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 S 0.13 3.65 19.79 -56.49 -1.12 2.53 16 24 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.08 1.94 6.67 -2.39 -0.02 1.93 16 30 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.06 1.95 6.00 -2.38 -0.01 1.94 16 32 H 0.05 1.77 6.76 -2.39 -0.02 1.76 16 33 H 0.02 0.66 6.05 -2.39 -0.01 0.65 16 34 H 0.07 2.45 4.93 -9.00 -0.04 2.41 16 35 H 0.06 2.78 6.57 -2.39 -0.02 2.76 16 36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.04 1.69 6.56 -2.39 -0.02 1.67 16 38 H 0.03 1.46 8.13 -2.39 -0.02 1.44 16 39 H 0.26 15.43 6.71 -92.71 -0.62 14.81 16 Total: -1.00 -64.55 313.77 2.13 -62.42 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.16 Total: 12.45 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 5.64 Total: -30.26 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -5.60 Total: -98.95 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.81 kcal Atomic # 16 Polarization: 3.65 SS G_CDS: -1.12 Total: 2.53 kcal Total: -64.55 2.13 -62.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831608.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.258 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds