Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.92071 * 2 1 4 4 C 1.31778 * 117.12498 * 180.23113 * 3 2 1 5 5 C 1.50698 * 122.74602 * 179.75177 * 4 3 2 6 6 C 1.33632 * 114.50402 * 359.48341 * 4 3 2 7 7 C 1.50692 * 126.04142 * 180.27399 * 6 4 3 8 8 H 1.09005 * 109.47428 * 8.94871 * 7 6 4 9 9 C 1.53007 * 109.46945 * 248.95768 * 7 6 4 10 10 N 1.46896 * 109.47627 * 128.95258 * 7 6 4 11 11 C 1.46903 * 110.99672 * 68.98596 * 10 7 6 12 12 C 1.46894 * 111.00277 * 305.03161 * 10 7 6 13 13 H 1.09000 * 109.46992 * 57.69863 * 12 10 7 14 14 C 1.53004 * 109.46761 * 297.70572 * 12 10 7 15 15 C 1.50701 * 109.47436 * 177.70260 * 12 10 7 16 16 H 1.08000 * 119.99876 * 4.59564 * 15 12 10 17 17 C 1.37872 * 120.00224 * 184.58873 * 15 12 10 18 18 N 1.31509 * 120.00296 * 196.18785 * 17 15 12 19 19 Si 1.86800 * 119.99910 * 16.19254 * 17 15 12 20 20 H 1.48498 * 109.47423 * 91.90163 * 19 17 15 21 21 H 1.48498 * 109.47175 * 211.90504 * 19 17 15 22 22 H 1.48503 * 109.47365 * 331.90468 * 19 17 15 23 23 S 1.70985 * 124.91630 * 179.69926 * 2 1 3 24 24 H 1.09005 * 109.46413 * 270.30710 * 1 2 3 25 25 H 1.09000 * 109.47354 * 30.29820 * 1 2 3 26 26 H 1.08995 * 109.47510 * 150.30631 * 1 2 3 27 27 H 1.09003 * 109.47459 * 269.70939 * 5 4 3 28 28 H 1.09004 * 109.47307 * 29.70960 * 5 4 3 29 29 H 1.09002 * 109.47028 * 149.70865 * 5 4 3 30 30 H 1.08995 * 109.47195 * 66.88819 * 9 7 6 31 31 H 1.09007 * 109.46966 * 186.89067 * 9 7 6 32 32 H 1.09002 * 109.46776 * 306.88706 * 9 7 6 33 33 H 1.08993 * 109.47597 * 50.88731 * 11 10 7 34 34 H 1.09004 * 109.46944 * 170.89103 * 11 10 7 35 35 H 1.08997 * 109.46732 * 290.88406 * 11 10 7 36 36 H 1.08995 * 109.47155 * 64.18145 * 14 12 10 37 37 H 1.09002 * 109.46724 * 184.17851 * 14 12 10 38 38 H 1.08999 * 109.47123 * 304.17103 * 14 12 10 39 39 H 0.97003 * 120.00322 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8792 -0.0047 5 6 4.5307 2.0244 -0.0108 6 6 3.9355 -0.4006 0.0020 7 6 5.3574 -0.8995 0.0047 8 1 6.0364 -0.0610 0.1602 9 6 5.6672 -1.5641 -1.3382 10 7 5.5313 -1.8775 1.0868 11 6 4.7924 -3.1148 0.8019 12 6 5.1277 -1.3093 2.3799 13 1 4.0899 -0.9808 2.3244 14 6 6.0235 -0.1147 2.7138 15 6 5.2663 -2.3569 3.4543 16 1 5.6885 -3.3220 3.2162 17 6 4.8542 -2.0834 4.7412 18 7 5.2523 -2.8466 5.7355 19 14 3.7303 -0.6286 5.0727 20 1 2.3149 -1.0751 5.0227 21 1 4.0261 -0.0706 6.4167 22 1 3.9562 0.4165 4.0422 23 16 2.4857 -1.4020 0.0074 24 1 -0.3632 0.0055 1.0277 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8927 -0.5090 27 1 4.7669 2.2952 -1.0399 28 1 4.0906 2.8818 0.4985 29 1 5.4433 1.7248 0.5046 30 1 5.6580 -0.8117 -2.1267 31 1 6.6509 -2.0318 -1.2937 32 1 4.9136 -2.3224 -1.5507 33 1 5.0425 -3.4649 -0.1995 34 1 5.0649 -3.8770 1.5319 35 1 3.7216 -2.9204 0.8620 36 1 5.8677 0.6734 1.9771 37 1 5.7733 0.2609 3.7060 38 1 7.0675 -0.4273 2.6964 39 1 4.9621 -2.6543 6.6409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259831618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = 51.879017 kcal Electronic energy + Delta-G solvation = -19681.689090 eV Core-core repulsion = 16944.562014 eV Total energy + Delta-G solvation = -2737.127077 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.82493 -37.83700 -33.57735 -32.48502 -31.07594 -29.61718 -28.76959 -26.90872 -25.61745 -24.40959 -22.54867 -21.51180 -19.84165 -18.13173 -17.49903 -16.77351 -15.39167 -15.08691 -14.99669 -14.54562 -13.77477 -13.51488 -13.39413 -13.08378 -13.02651 -12.62874 -12.51109 -12.35319 -12.19502 -11.92867 -11.87376 -11.61553 -11.38254 -11.19952 -10.84547 -10.74750 -10.48753 -10.25761 -10.19039 -9.55369 -9.19287 -9.11311 -8.78872 -8.50739 -8.26048 -7.45401 -6.12576 -4.05758 1.03719 1.68074 2.10394 3.07872 3.25406 3.35091 3.40910 4.32549 4.40062 4.69557 5.06220 5.17153 5.21231 5.37356 5.40695 5.48566 5.51242 5.58684 5.73163 5.78524 5.82704 5.90178 6.07986 6.15028 6.17341 6.30547 6.32887 6.42762 6.56532 6.61702 6.63592 6.81298 6.95678 7.28444 7.62012 7.86314 7.99614 8.07224 8.60018 8.97385 9.53819 10.99975 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.009002 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.753356 B = 3109.745452 C = 3564.476444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 N -0.475 5.475 4 C 0.056 3.944 5 C -0.078 4.078 6 C -0.228 4.228 7 C 0.146 3.854 8 H 0.101 0.899 9 C -0.142 4.142 10 N -0.511 5.511 11 C 0.026 3.974 12 C 0.186 3.814 13 H 0.000 1.000 14 C -0.140 4.140 15 C -0.513 4.513 16 H 0.082 0.918 17 C 0.080 3.920 18 N -0.889 5.889 19 Si 0.854 3.146 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.256 1.256 23 S 0.140 5.860 24 H 0.080 0.920 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.831 4.876 -13.889 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.268 4.268 3 N -0.190 5.190 4 C -0.076 4.076 5 C -0.137 4.137 6 C -0.351 4.351 7 C 0.034 3.966 8 H 0.118 0.882 9 C -0.200 4.200 10 N -0.233 5.233 11 C -0.123 4.123 12 C 0.078 3.922 13 H 0.018 0.982 14 C -0.198 4.198 15 C -0.551 4.551 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.527 5.527 19 Si 0.681 3.319 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.180 1.180 23 S 0.397 5.603 24 H 0.099 0.901 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.835 4.157 -13.630 15.048 hybrid contribution -1.084 1.708 0.538 2.093 sum -5.919 5.864 -13.091 15.518 Atomic orbital electron populations 1.20337 0.85970 1.03440 1.03474 1.27182 1.01700 0.93239 1.04678 1.66089 1.04523 1.32161 1.16256 1.20026 0.90144 0.93994 1.03467 1.20394 0.96312 0.94737 1.02251 1.26853 1.01152 0.96004 1.11104 1.20574 0.86925 0.96150 0.92969 0.88161 1.21960 1.02449 1.00397 0.95208 1.62407 1.55394 1.03562 1.01944 1.22605 0.94686 0.94139 1.00888 1.19650 0.92610 0.93640 0.86255 0.98243 1.22197 1.01261 0.97024 0.99285 1.20909 1.41885 1.00588 0.91705 0.90045 1.24807 0.95688 0.95884 0.95887 1.69964 1.43021 1.40145 0.99548 0.87324 0.81978 0.84497 0.78057 1.20742 1.21221 1.18009 1.84197 0.97024 1.11125 1.67993 0.90107 0.89892 0.90534 0.91135 0.91082 0.90389 0.92573 0.90973 0.92558 0.92662 0.89493 0.95899 0.95831 0.93319 0.92569 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.46 36.01 0.38 -0.48 16 2 C 0.01 0.15 7.39 -13.45 -0.10 0.05 16 3 N -0.47 -8.52 10.53 -8.06 -0.08 -8.61 16 4 C 0.06 0.97 6.74 -84.23 -0.57 0.40 16 5 C -0.08 -1.12 9.98 36.00 0.36 -0.76 16 6 C -0.23 -3.96 3.68 -35.93 -0.13 -4.09 16 7 C 0.15 2.43 2.39 -68.87 -0.16 2.27 16 8 H 0.10 1.64 5.14 -51.93 -0.27 1.37 16 9 C -0.14 -1.93 8.39 37.16 0.31 -1.61 16 10 N -0.51 -10.23 4.69 -229.69 -1.08 -11.31 16 11 C 0.03 0.48 8.16 60.07 0.49 0.97 16 12 C 0.19 4.34 1.29 -68.87 -0.09 4.25 16 13 H 0.00 0.00 5.18 -51.93 -0.27 -0.27 16 14 C -0.14 -3.10 8.21 37.16 0.31 -2.79 16 15 C -0.51 -14.10 8.30 -34.44 -0.29 -14.39 16 16 H 0.08 2.41 6.68 -52.49 -0.35 2.06 16 17 C 0.08 2.29 5.32 -17.82 -0.09 2.19 16 18 N -0.89 -26.85 13.96 55.43 0.77 -26.08 16 19 Si 0.85 21.72 25.81 -169.99 -4.39 17.33 16 20 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.26 -6.34 5.52 56.52 0.31 -6.03 16 23 S 0.14 2.31 19.21 -107.50 -2.07 0.25 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.10 4.78 -51.93 -0.25 0.85 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.75 6.55 -51.93 -0.34 0.41 16 33 H 0.05 0.87 5.80 -51.93 -0.30 0.56 16 34 H 0.09 1.80 6.40 -51.93 -0.33 1.47 16 35 H 0.02 0.44 4.58 -31.80 -0.15 0.30 16 36 H 0.02 0.45 4.94 -51.93 -0.26 0.19 16 37 H 0.05 1.13 5.01 -51.93 -0.26 0.87 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -31.36 302.76 -7.25 -38.61 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.38 Total: -0.77 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 0.41 Total: -13.99 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: -0.39 Total: -45.99 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.39 Total: 17.33 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.07 Total: 0.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.36 -7.25 -38.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.486 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds