Wall clock time and date at job start Mon Mar 30 2020 07:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29031 * 124.92071 * 2 1 4 4 C 1.31778 * 117.12498 * 180.23113 * 3 2 1 5 5 C 1.50698 * 122.74602 * 179.75177 * 4 3 2 6 6 C 1.33632 * 114.50402 * 359.48341 * 4 3 2 7 7 C 1.50692 * 126.04142 * 180.27399 * 6 4 3 8 8 H 1.09005 * 109.47428 * 8.94871 * 7 6 4 9 9 C 1.53007 * 109.46945 * 248.95768 * 7 6 4 10 10 N 1.46896 * 109.47627 * 128.95258 * 7 6 4 11 11 C 1.46903 * 110.99672 * 68.98596 * 10 7 6 12 12 C 1.46894 * 111.00277 * 305.03161 * 10 7 6 13 13 H 1.09000 * 109.46992 * 57.69863 * 12 10 7 14 14 C 1.53004 * 109.46761 * 297.70572 * 12 10 7 15 15 C 1.50701 * 109.47436 * 177.70260 * 12 10 7 16 16 H 1.08000 * 119.99876 * 4.59564 * 15 12 10 17 17 C 1.37872 * 120.00224 * 184.58873 * 15 12 10 18 18 N 1.31509 * 120.00296 * 196.18785 * 17 15 12 19 19 Si 1.86800 * 119.99910 * 16.19254 * 17 15 12 20 20 H 1.48498 * 109.47423 * 91.90163 * 19 17 15 21 21 H 1.48498 * 109.47175 * 211.90504 * 19 17 15 22 22 H 1.48503 * 109.47365 * 331.90468 * 19 17 15 23 23 S 1.70985 * 124.91630 * 179.69926 * 2 1 3 24 24 H 1.09005 * 109.46413 * 270.30710 * 1 2 3 25 25 H 1.09000 * 109.47354 * 30.29820 * 1 2 3 26 26 H 1.08995 * 109.47510 * 150.30631 * 1 2 3 27 27 H 1.09003 * 109.47459 * 269.70939 * 5 4 3 28 28 H 1.09004 * 109.47307 * 29.70960 * 5 4 3 29 29 H 1.09002 * 109.47028 * 149.70865 * 5 4 3 30 30 H 1.08995 * 109.47195 * 66.88819 * 9 7 6 31 31 H 1.09007 * 109.46966 * 186.89067 * 9 7 6 32 32 H 1.09002 * 109.46776 * 306.88706 * 9 7 6 33 33 H 1.08993 * 109.47597 * 50.88731 * 11 10 7 34 34 H 1.09004 * 109.46944 * 170.89103 * 11 10 7 35 35 H 1.08997 * 109.46732 * 290.88406 * 11 10 7 36 36 H 1.08995 * 109.47155 * 64.18145 * 14 12 10 37 37 H 1.09002 * 109.46724 * 184.17851 * 14 12 10 38 38 H 1.08999 * 109.47123 * 304.17103 * 14 12 10 39 39 H 0.97003 * 120.00322 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8792 -0.0047 5 6 4.5307 2.0244 -0.0108 6 6 3.9355 -0.4006 0.0020 7 6 5.3574 -0.8995 0.0047 8 1 6.0364 -0.0610 0.1602 9 6 5.6672 -1.5641 -1.3382 10 7 5.5313 -1.8775 1.0868 11 6 4.7924 -3.1148 0.8019 12 6 5.1277 -1.3093 2.3799 13 1 4.0899 -0.9808 2.3244 14 6 6.0235 -0.1147 2.7138 15 6 5.2663 -2.3569 3.4543 16 1 5.6885 -3.3220 3.2162 17 6 4.8542 -2.0834 4.7412 18 7 5.2523 -2.8466 5.7355 19 14 3.7303 -0.6286 5.0727 20 1 2.3149 -1.0751 5.0227 21 1 4.0261 -0.0706 6.4167 22 1 3.9562 0.4165 4.0422 23 16 2.4857 -1.4020 0.0074 24 1 -0.3632 0.0055 1.0277 25 1 -0.3634 0.8873 -0.5184 26 1 -0.3634 -0.8927 -0.5090 27 1 4.7669 2.2952 -1.0399 28 1 4.0906 2.8818 0.4985 29 1 5.4433 1.7248 0.5046 30 1 5.6580 -0.8117 -2.1267 31 1 6.6509 -2.0318 -1.2937 32 1 4.9136 -2.3224 -1.5507 33 1 5.0425 -3.4649 -0.1995 34 1 5.0649 -3.8770 1.5319 35 1 3.7216 -2.9204 0.8620 36 1 5.8677 0.6734 1.9771 37 1 5.7733 0.2609 3.7060 38 1 7.0675 -0.4273 2.6964 39 1 4.9621 -2.6543 6.6409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259831618.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:52 Heat of formation + Delta-G solvation = 30.051871 kcal Electronic energy + Delta-G solvation = -19682.635587 eV Core-core repulsion = 16944.562014 eV Total energy + Delta-G solvation = -2738.073573 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.11127 -39.32656 -35.36025 -33.91144 -32.79063 -30.97579 -29.95158 -28.11312 -27.46590 -26.08672 -23.72766 -23.02471 -21.44396 -19.52017 -18.95139 -18.59318 -17.05066 -16.49409 -16.41919 -16.03530 -15.36414 -14.99904 -14.75951 -14.52952 -14.23809 -14.20846 -13.86589 -13.67514 -13.53626 -13.28522 -13.08921 -12.98642 -12.73972 -12.71220 -12.42857 -12.30548 -12.24349 -11.96943 -11.66085 -11.51132 -11.08442 -10.66669 -10.46765 -10.07147 -9.56986 -9.01841 -8.33601 -6.28818 -0.21344 0.44436 0.84952 1.22238 1.28792 1.36671 1.82198 2.27913 2.99990 3.18801 3.23579 3.83993 4.07937 4.14093 4.30469 4.35554 4.43362 4.52207 4.58634 4.59676 4.69246 4.72079 4.73254 4.84519 4.89677 4.91179 4.97754 5.03975 5.09462 5.13512 5.23294 5.28816 5.39073 5.50238 5.72166 6.00028 6.30460 6.65186 6.76636 6.82085 7.33848 8.82769 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017422 B = 0.009002 C = 0.007853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.753356 B = 3109.745452 C = 3564.476444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 N -0.499 5.499 4 C 0.045 3.955 5 C -0.077 4.077 6 C -0.246 4.246 7 C 0.146 3.854 8 H 0.106 0.894 9 C -0.136 4.136 10 N -0.521 5.521 11 C 0.029 3.971 12 C 0.195 3.805 13 H -0.011 1.011 14 C -0.137 4.137 15 C -0.509 4.509 16 H 0.047 0.953 17 C 0.031 3.969 18 N -0.935 5.935 19 Si 0.910 3.090 20 H -0.281 1.281 21 H -0.283 1.283 22 H -0.244 1.244 23 S 0.129 5.871 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.034 0.966 38 H 0.053 0.947 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 6.459 -15.769 17.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.266 4.266 3 N -0.216 5.216 4 C -0.087 4.087 5 C -0.136 4.136 6 C -0.369 4.369 7 C 0.035 3.965 8 H 0.124 0.876 9 C -0.193 4.193 10 N -0.243 5.243 11 C -0.120 4.120 12 C 0.087 3.913 13 H 0.007 0.993 14 C -0.195 4.195 15 C -0.547 4.547 16 H 0.066 0.934 17 C -0.168 4.168 18 N -0.575 5.575 19 Si 0.735 3.265 20 H -0.208 1.208 21 H -0.209 1.209 22 H -0.168 1.168 23 S 0.385 5.615 24 H 0.104 0.896 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.583 5.745 -15.537 17.481 hybrid contribution -0.866 1.168 1.039 1.788 sum -6.450 6.913 -14.498 17.308 Atomic orbital electron populations 1.20541 0.83237 1.05298 1.04312 1.27878 1.03365 0.92461 1.02866 1.66181 1.04961 1.32798 1.17628 1.20508 0.90592 0.94827 1.02760 1.20478 0.95536 0.93742 1.03865 1.26870 1.01377 0.96208 1.12438 1.20671 0.86990 0.95716 0.93129 0.87633 1.21923 1.02681 1.00880 0.93847 1.62309 1.55688 1.04618 1.01702 1.22556 0.94661 0.93087 1.01718 1.19391 0.92310 0.92734 0.86904 0.99346 1.22105 1.00709 0.97297 0.99350 1.21182 1.40250 1.00346 0.92923 0.93442 1.25475 0.97009 0.98460 0.95865 1.70078 1.44915 1.42415 1.00063 0.86428 0.79904 0.81930 0.78216 1.20777 1.20872 1.16755 1.84154 0.97379 1.11696 1.68221 0.89584 0.88589 0.88167 0.88720 0.91092 0.90274 0.90393 0.90387 0.92466 0.89477 0.92485 0.95976 0.92858 0.94748 0.92758 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.56 10.46 71.24 0.75 -0.81 16 2 C 0.01 0.34 7.39 88.52 0.65 1.00 16 3 N -0.50 -16.81 10.53 -179.40 -1.89 -18.70 16 4 C 0.04 1.45 6.74 41.52 0.28 1.73 16 5 C -0.08 -2.00 9.98 71.24 0.71 -1.29 16 6 C -0.25 -8.01 3.68 24.64 0.09 -7.92 16 7 C 0.15 4.54 2.39 44.17 0.11 4.65 16 8 H 0.11 3.15 5.14 -2.38 -0.01 3.14 16 9 C -0.14 -3.26 8.39 71.98 0.60 -2.66 16 10 N -0.52 -20.32 4.69 -880.60 -4.13 -24.45 16 11 C 0.03 1.06 8.16 127.69 1.04 2.10 16 12 C 0.19 8.98 1.29 44.17 0.06 9.04 16 13 H -0.01 -0.53 5.18 -2.39 -0.01 -0.54 16 14 C -0.14 -5.87 8.21 71.98 0.59 -5.27 16 15 C -0.51 -28.49 8.30 25.60 0.21 -28.28 16 16 H 0.05 2.93 6.68 -2.91 -0.02 2.91 16 17 C 0.03 1.77 5.32 84.65 0.45 2.22 16 18 N -0.93 -57.85 13.96 21.44 0.30 -57.55 16 19 Si 0.91 44.99 25.81 68.60 1.77 46.76 16 20 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.24 -11.49 5.52 99.48 0.55 -10.95 16 23 S 0.13 4.03 19.21 -56.49 -1.09 2.95 16 24 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.77 16 26 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 2.00 4.78 -2.39 -0.01 1.98 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.06 1.36 6.55 -2.39 -0.02 1.34 16 33 H 0.09 2.61 5.80 -2.39 -0.01 2.60 16 34 H 0.06 2.43 6.40 -2.38 -0.02 2.41 16 35 H 0.02 0.84 4.58 -15.19 -0.07 0.77 16 36 H 0.05 1.94 4.94 -2.39 -0.01 1.93 16 37 H 0.03 1.54 5.01 -2.39 -0.01 1.53 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -67.74 302.76 1.35 -66.38 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.84 Total: 10.10 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 5.54 Total: -25.50 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -5.72 Total: -100.69 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.77 Total: 46.76 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -1.09 Total: 2.95 kcal Total: -67.74 1.35 -66.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259831618.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.434 kcal (2) G-P(sol) polarization free energy of solvation -67.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds